Wall clock time and date at job start Fri Apr 10 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47444 * 2 1 4 4 C 1.46498 * 120.00079 * 270.00264 * 3 2 1 5 5 C 1.50703 * 109.47304 * 269.99996 * 4 3 2 6 6 H 1.07994 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99839 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00517 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46953 * 89.99843 * 9 7 5 11 11 H 1.48497 * 109.47163 * 209.99818 * 9 7 5 12 12 H 1.48501 * 109.46880 * 329.99860 * 9 7 5 13 13 C 1.34773 * 120.00049 * 90.00140 * 3 2 1 14 14 O 1.21285 * 120.00296 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99949 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47139 * 179.97438 * 15 13 3 17 17 C 1.36880 * 126.39785 * 265.01605 * 16 15 13 18 18 C 1.34674 * 106.82015 * 179.73791 * 17 16 15 19 19 N 1.34130 * 108.01710 * 0.23538 * 18 17 16 20 20 C 1.30496 * 109.26014 * 359.97438 * 19 18 17 21 21 S 1.76201 * 125.65158 * 180.02562 * 20 19 18 22 22 C 1.81394 * 104.44860 * 89.98009 * 21 20 19 23 23 O 1.42107 * 104.27765 * 206.04887 * 21 20 19 24 24 O 1.42093 * 104.27506 * 333.90452 * 21 20 19 25 25 H 1.09004 * 109.46655 * 299.99653 * 1 2 3 26 26 H 1.08998 * 109.47706 * 59.99355 * 1 2 3 27 27 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46655 * 240.00347 * 2 1 3 29 29 H 1.08994 * 109.47330 * 120.00323 * 2 1 3 30 30 H 1.09002 * 109.47080 * 30.00308 * 4 3 2 31 31 H 1.09003 * 109.46996 * 149.99862 * 4 3 2 32 32 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47634 * 59.99427 * 15 13 3 34 34 H 1.09002 * 109.46876 * 299.99587 * 15 13 3 35 35 H 1.08002 * 126.59253 * 0.02562 * 17 16 15 36 36 H 1.07997 * 125.99347 * 180.23004 * 18 17 16 37 37 H 1.09002 * 109.47417 * 59.99980 * 22 21 20 38 38 H 1.09001 * 109.47265 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47242 * 299.99850 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0964 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0963 -3.4173 10 1 5.9758 0.8758 -4.2609 11 1 6.3929 3.2638 -4.1995 12 1 6.7735 1.9153 -2.2204 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3103 2.2032 3.5858 17 6 3.4971 2.2662 4.2648 18 6 3.3605 3.2254 5.2002 19 7 2.1221 3.7307 5.0985 20 6 1.4864 3.1214 4.1354 21 16 -0.1702 3.4473 3.6312 22 6 -0.0120 4.7301 2.3585 23 8 -0.6081 2.2244 3.0548 24 8 -0.7935 3.9733 4.7948 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.5816 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1383 32 1 3.6753 3.5171 -4.4435 33 1 2.6228 0.4185 2.5298 34 1 0.9445 1.0114 2.5302 35 1 4.3760 1.6656 4.0822 36 1 4.1155 3.5338 5.9081 37 1 0.5969 4.3534 1.5366 38 1 -1.0011 4.9957 1.9854 39 1 0.4634 5.6118 2.7884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177322987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:32 Heat of formation + Delta-G solvation = -30.933704 kcal Electronic energy + Delta-G solvation = -25484.054508 eV Core-core repulsion = 21749.175394 eV Total energy + Delta-G solvation = -3734.879114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22353 -39.33634 -37.29289 -36.13215 -35.63718 -34.04439 -32.89041 -30.28402 -30.03810 -29.44150 -28.65990 -26.56594 -23.23903 -23.04602 -22.31383 -21.61453 -19.34952 -18.86057 -17.65886 -17.12718 -16.57791 -16.27677 -16.07778 -15.90245 -15.39905 -15.13289 -14.76128 -14.28589 -14.20138 -13.57647 -13.48199 -13.32228 -13.27812 -13.11423 -12.88712 -12.31171 -12.26032 -12.17623 -11.91493 -11.76048 -11.57791 -11.33724 -11.09872 -11.04013 -10.85734 -10.69014 -10.30485 -10.27938 -10.18794 -9.81000 -9.15975 -8.89437 -8.57571 -7.95902 -6.19014 -4.24610 -0.11947 1.51555 2.39014 2.63222 2.83047 2.92355 3.20224 3.27830 3.30705 3.59227 3.76542 3.99855 4.31554 4.60072 4.62880 4.66829 4.78729 5.00155 5.11279 5.16229 5.22150 5.26790 5.43831 5.51071 5.68970 5.77839 5.94028 5.96064 6.13420 6.45630 6.54580 6.67113 6.84492 7.19671 7.28575 7.64742 7.75595 8.04519 8.06988 8.56734 8.80298 9.41029 10.89142 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.004540 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.226041 B = 6165.916404 C = 6638.241470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 N -0.583 5.583 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.488 3.512 14 O -0.530 6.530 15 C 0.043 3.957 16 N -0.381 5.381 17 C 0.007 3.993 18 C -0.036 4.036 19 N -0.398 5.398 20 C -0.330 4.330 21 S 2.528 3.472 22 C -0.638 4.638 23 O -0.936 6.936 24 O -0.914 6.914 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -4.754 11.699 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.024 4.024 3 N -0.314 5.314 4 C 0.127 3.873 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.272 3.728 14 O -0.407 6.407 15 C -0.083 4.083 16 N -0.061 5.061 17 C -0.132 4.132 18 C -0.189 4.189 19 N -0.118 5.118 20 C -0.668 4.668 21 S 2.702 3.298 22 C -0.791 4.791 23 O -0.933 6.933 24 O -0.910 6.910 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.171 0.829 35 H 0.202 0.798 36 H 0.198 0.802 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.373 -3.927 12.167 14.285 hybrid contribution 2.454 -0.616 -1.226 2.811 sum -3.919 -4.544 10.941 12.478 Atomic orbital electron populations 1.22300 0.95895 1.02104 1.03365 1.21571 0.94315 0.83522 1.02992 1.48284 1.62332 1.13554 1.07256 1.19388 0.96682 0.93645 0.77620 1.21364 0.96710 1.32342 1.06548 0.92456 1.24925 0.97962 0.94750 0.96306 1.69919 1.35770 1.33097 1.14304 0.86481 0.84411 0.77808 0.78623 1.20527 1.21004 1.19957 1.20236 0.79919 0.87586 0.85089 1.90744 1.45707 1.17530 1.86752 1.22692 1.07809 0.93151 0.84619 1.44672 1.10782 1.26927 1.23738 1.23242 0.90288 1.03293 0.96410 1.22568 0.95345 0.98459 1.02511 1.70176 1.05446 1.22437 1.13728 1.36197 1.21139 1.02903 1.06578 1.04832 0.71668 0.76832 0.76461 1.30135 1.12500 1.18162 1.18291 1.93509 1.78072 1.42052 1.79643 1.93602 1.70992 1.80735 1.45714 0.91564 0.91829 0.91820 0.89321 0.91789 0.94413 0.93717 0.92547 0.85611 0.82932 0.79828 0.80188 0.83735 0.84437 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.41 5.93 -4.05 -0.02 1.38 16 3 N -0.58 -10.96 2.46 -175.06 -0.43 -11.39 16 4 C 0.25 5.87 5.16 -5.19 -0.03 5.84 16 5 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.49 8.97 7.74 -10.99 -0.09 8.88 16 14 O -0.53 -11.70 14.68 5.55 0.08 -11.62 16 15 C 0.04 0.60 4.76 -5.20 -0.02 0.57 16 16 N -0.38 -5.71 2.24 -118.88 -0.27 -5.97 16 17 C 0.01 0.09 11.58 -16.56 -0.19 -0.10 16 18 C -0.04 -0.49 11.87 -17.81 -0.21 -0.70 16 19 N -0.40 -6.57 11.23 -13.85 -0.16 -6.72 16 20 C -0.33 -5.23 7.55 -90.37 -0.68 -5.91 16 21 S 2.53 35.06 5.88 -107.50 -0.63 34.43 16 22 C -0.64 -7.63 10.79 101.05 1.09 -6.54 16 23 O -0.94 -13.39 15.12 -57.54 -0.87 -14.26 16 24 O -0.91 -14.70 17.93 -57.54 -1.03 -15.74 16 25 H 0.07 0.83 7.22 -51.93 -0.38 0.46 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.13 1.33 7.40 -51.93 -0.38 0.95 16 34 H 0.15 1.97 4.65 -51.93 -0.24 1.72 16 35 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.18 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.14 2.08 6.78 -51.92 -0.35 1.73 16 38 H 0.14 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.14 1.50 8.14 -51.92 -0.42 1.08 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.85 344.99 -7.58 -43.43 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.99 Total: 2.45 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.20 Total: -11.17 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.12 Total: -48.62 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.82 Total: -41.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 35.06 SS G_CDS: -0.63 Total: 34.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.85 -7.58 -43.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177322987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.496 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds