Wall clock time and date at job start Fri Apr 10 2020 18:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47444 * 2 1 4 4 C 1.46498 * 120.00079 * 270.00264 * 3 2 1 5 5 C 1.50703 * 109.47304 * 269.99996 * 4 3 2 6 6 H 1.07994 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99839 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00517 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46953 * 89.99843 * 9 7 5 11 11 H 1.48497 * 109.47163 * 209.99818 * 9 7 5 12 12 H 1.48501 * 109.46880 * 329.99860 * 9 7 5 13 13 C 1.34773 * 120.00049 * 90.00140 * 3 2 1 14 14 O 1.21285 * 120.00296 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99949 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47139 * 179.97438 * 15 13 3 17 17 C 1.36880 * 126.39785 * 265.01605 * 16 15 13 18 18 C 1.34674 * 106.82015 * 179.73791 * 17 16 15 19 19 N 1.34130 * 108.01710 * 0.23538 * 18 17 16 20 20 C 1.30496 * 109.26014 * 359.97438 * 19 18 17 21 21 S 1.76201 * 125.65158 * 180.02562 * 20 19 18 22 22 C 1.81394 * 104.44860 * 89.98009 * 21 20 19 23 23 O 1.42107 * 104.27765 * 206.04887 * 21 20 19 24 24 O 1.42093 * 104.27506 * 333.90452 * 21 20 19 25 25 H 1.09004 * 109.46655 * 299.99653 * 1 2 3 26 26 H 1.08998 * 109.47706 * 59.99355 * 1 2 3 27 27 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46655 * 240.00347 * 2 1 3 29 29 H 1.08994 * 109.47330 * 120.00323 * 2 1 3 30 30 H 1.09002 * 109.47080 * 30.00308 * 4 3 2 31 31 H 1.09003 * 109.46996 * 149.99862 * 4 3 2 32 32 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47634 * 59.99427 * 15 13 3 34 34 H 1.09002 * 109.46876 * 299.99587 * 15 13 3 35 35 H 1.08002 * 126.59253 * 0.02562 * 17 16 15 36 36 H 1.07997 * 125.99347 * 180.23004 * 18 17 16 37 37 H 1.09002 * 109.47417 * 59.99980 * 22 21 20 38 38 H 1.09001 * 109.47265 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47242 * 299.99850 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0964 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0963 -3.4173 10 1 5.9758 0.8758 -4.2609 11 1 6.3929 3.2638 -4.1995 12 1 6.7735 1.9153 -2.2204 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3103 2.2032 3.5858 17 6 3.4971 2.2662 4.2648 18 6 3.3605 3.2254 5.2002 19 7 2.1221 3.7307 5.0985 20 6 1.4864 3.1214 4.1354 21 16 -0.1702 3.4473 3.6312 22 6 -0.0120 4.7301 2.3585 23 8 -0.6081 2.2244 3.0548 24 8 -0.7935 3.9733 4.7948 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.5816 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1383 32 1 3.6753 3.5171 -4.4435 33 1 2.6228 0.4185 2.5298 34 1 0.9445 1.0114 2.5302 35 1 4.3760 1.6656 4.0822 36 1 4.1155 3.5338 5.9081 37 1 0.5969 4.3534 1.5366 38 1 -1.0011 4.9957 1.9854 39 1 0.4634 5.6118 2.7884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177322987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:31 Heat of formation + Delta-G solvation = -57.274186 kcal Electronic energy + Delta-G solvation = -25485.196717 eV Core-core repulsion = 21749.175394 eV Total energy + Delta-G solvation = -3736.021323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31180 -40.77134 -38.43098 -37.27873 -37.10677 -35.30653 -34.76297 -31.66420 -31.09421 -30.46123 -30.04133 -28.17540 -24.98694 -24.23681 -23.47246 -22.68753 -20.66401 -20.04859 -18.82316 -18.70477 -18.30231 -17.40988 -17.31346 -17.03077 -16.83193 -16.48891 -16.22572 -15.72828 -15.30634 -14.76537 -14.64699 -14.54323 -14.37051 -14.23962 -14.15570 -13.79992 -13.55255 -13.41149 -13.25884 -13.13149 -13.01752 -12.70522 -12.69243 -12.49637 -12.19449 -12.16051 -11.89673 -11.73564 -11.45193 -11.38987 -10.64627 -10.53385 -9.95272 -9.54724 -8.23929 -6.37675 -1.17612 0.40487 1.31242 1.36933 1.39169 1.48020 1.51315 1.58253 1.78295 2.22338 2.40203 2.66881 2.90918 3.07165 3.37914 3.60706 3.66050 3.89994 3.98313 4.10740 4.21247 4.30091 4.41802 4.44875 4.65281 4.79664 4.88849 4.92134 5.01494 5.07324 5.21853 5.45583 5.53548 5.55502 5.63804 5.78893 6.03412 6.55833 6.59340 6.71711 7.14590 7.34747 8.83216 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.004540 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.226041 B = 6165.916404 C = 6638.241470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.588 5.588 4 C 0.261 3.739 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.483 3.517 14 O -0.575 6.575 15 C 0.051 3.949 16 N -0.389 5.389 17 C 0.009 3.991 18 C -0.049 4.049 19 N -0.428 5.428 20 C -0.354 4.354 21 S 2.541 3.459 22 C -0.632 4.632 23 O -0.943 6.943 24 O -0.940 6.940 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.221 0.779 36 H 0.210 0.790 37 H 0.122 0.878 38 H 0.170 0.830 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -6.645 12.478 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.030 4.030 3 N -0.319 5.319 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.269 3.731 14 O -0.455 6.455 15 C -0.073 4.073 16 N -0.069 5.069 17 C -0.130 4.130 18 C -0.202 4.202 19 N -0.148 5.148 20 C -0.691 4.691 21 S 2.715 3.285 22 C -0.785 4.785 23 O -0.940 6.940 24 O -0.937 6.937 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.045 0.955 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.186 0.814 34 H 0.183 0.817 35 H 0.237 0.763 36 H 0.226 0.774 37 H 0.141 0.859 38 H 0.188 0.812 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.454 -5.874 12.979 15.255 hybrid contribution 2.156 -0.003 -1.452 2.600 sum -3.298 -5.877 11.527 13.353 Atomic orbital electron populations 1.22259 0.94587 1.03899 1.02340 1.21919 0.95412 0.80981 1.04722 1.48232 1.62550 1.15249 1.05824 1.18818 0.95459 0.91869 0.79899 1.21682 0.97792 1.31923 1.06521 0.92510 1.25787 1.02015 0.94546 0.96545 1.70038 1.37672 1.34183 1.14791 0.85471 0.79403 0.78026 0.78237 1.18998 1.21092 1.19685 1.20962 0.78648 0.87178 0.86266 1.90721 1.47581 1.19624 1.87582 1.22757 1.09573 0.93383 0.81619 1.44829 1.11287 1.26967 1.23863 1.23928 0.90571 1.03081 0.95389 1.23199 0.95118 0.98500 1.03359 1.70153 1.06865 1.23341 1.14487 1.36366 1.21870 1.03707 1.07140 1.04443 0.71038 0.76820 0.76151 1.30096 1.14200 1.17635 1.16610 1.93476 1.78192 1.42712 1.79587 1.93565 1.71722 1.81174 1.47213 0.91635 0.93814 0.88567 0.89973 0.87651 0.95463 0.97768 0.92472 0.81393 0.81720 0.76267 0.77368 0.85917 0.81167 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 10.24 71.98 0.74 -3.20 16 2 C 0.09 2.38 5.93 86.38 0.51 2.89 16 3 N -0.59 -21.80 2.46 -826.17 -2.03 -23.83 16 4 C 0.26 12.81 5.16 85.63 0.44 13.25 16 5 C -0.54 -28.86 9.39 25.60 0.24 -28.62 16 6 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.56 5.46 84.65 0.46 1.03 16 8 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 9 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.48 17.37 7.74 87.66 0.68 18.05 16 14 O -0.57 -25.72 14.68 -3.04 -0.04 -25.76 16 15 C 0.05 1.30 4.76 85.63 0.41 1.71 16 16 N -0.39 -10.93 2.24 -530.02 -1.19 -12.11 16 17 C 0.01 0.22 11.58 83.09 0.96 1.18 16 18 C -0.05 -1.28 11.87 83.52 0.99 -0.28 16 19 N -0.43 -13.86 11.23 -197.73 -2.22 -16.08 16 20 C -0.35 -10.97 7.55 180.26 1.36 -9.61 16 21 S 2.54 69.73 5.88 -56.49 -0.33 69.40 16 22 C -0.63 -15.06 10.79 113.37 1.22 -13.84 16 23 O -0.94 -26.17 15.12 -127.65 -1.93 -28.10 16 24 O -0.94 -30.30 17.93 -127.65 -2.29 -32.59 16 25 H 0.06 1.51 7.22 -2.38 -0.02 1.49 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 29 H 0.11 1.86 6.44 -2.39 -0.02 1.85 16 30 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 31 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.17 2.77 7.40 -2.39 -0.02 2.76 16 34 H 0.17 3.81 4.65 -2.39 -0.01 3.80 16 35 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.21 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.12 3.64 6.78 -2.39 -0.02 3.63 16 38 H 0.17 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.15 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -79.90 344.99 1.37 -78.54 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.07 Total: 16.50 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 8.02 Total: -17.44 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -5.15 Total: -105.27 kcal Atomic # 8 Polarization: -82.19 SS G_CDS: -4.26 Total: -86.45 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 69.73 SS G_CDS: -0.33 Total: 69.40 kcal Total: -79.90 1.37 -78.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177322987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.263 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds