Wall clock time and date at job start Fri Apr 10 2020 18:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.98727 * 2 1 4 4 C 1.38436 * 119.97093 * 179.97438 * 3 2 1 5 5 F 1.35098 * 120.02316 * 179.97438 * 4 3 2 6 6 C 1.38473 * 119.95217 * 0.02562 * 4 3 2 7 7 C 1.38177 * 119.97620 * 359.74359 * 6 4 3 8 8 C 1.38229 * 119.98829 * 179.97438 * 2 1 3 9 9 S 1.76200 * 119.97225 * 359.97438 * 8 2 1 10 10 O 1.42096 * 106.39882 * 181.46012 * 9 8 2 11 11 O 1.42103 * 106.40193 * 48.54485 * 9 8 2 12 12 N 1.65593 * 107.22178 * 295.00429 * 9 8 2 13 13 C 1.47584 * 134.49803 * 89.99723 * 12 9 8 14 14 C 1.53946 * 86.12025 * 155.36171 * 13 12 9 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49149 * 270.00557 * 12 9 8 25 25 H 1.09003 * 109.46895 * 270.02017 * 1 2 3 26 26 H 1.08997 * 109.47075 * 30.02137 * 1 2 3 27 27 H 1.08998 * 109.46765 * 150.02169 * 1 2 3 28 28 H 1.07997 * 120.01311 * 359.95738 * 3 2 1 29 29 H 1.08005 * 120.01227 * 179.97438 * 6 4 3 30 30 H 1.08002 * 119.98935 * 180.25908 * 7 6 4 31 31 H 1.09003 * 113.76727 * 41.05741 * 13 12 9 32 32 H 1.09000 * 113.86995 * 269.68082 * 13 12 9 33 33 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 34 34 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 35 35 H 1.08994 * 113.77423 * 90.33548 * 24 12 9 36 36 H 1.09010 * 113.76672 * 318.93394 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1972 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0032 0.0005 7 6 3.5805 -1.1988 0.0054 8 6 2.1979 -1.1972 0.0005 9 16 1.3159 -2.7226 0.0019 10 8 2.2947 -3.7520 0.0369 11 8 0.3333 -2.6188 -1.0195 12 7 0.4922 -2.8114 1.4357 13 6 -0.8483 -2.3895 1.8864 14 6 -0.7180 -3.4860 2.9591 15 8 -1.2330 -4.7547 2.5503 16 6 -1.2075 -3.0642 4.3205 17 1 -1.6756 -2.0997 4.4511 18 6 -1.0579 -3.9095 5.3994 19 7 -0.2592 -4.9509 5.3130 20 14 -1.9893 -3.5758 6.9837 21 1 -1.6571 -4.6227 7.9832 22 1 -1.6016 -2.2443 7.5148 23 1 -3.4493 -3.5947 6.7129 24 6 0.8040 -3.3441 2.7763 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6579 2.1325 -0.0007 29 1 5.3533 -0.0046 0.0005 30 1 4.1193 -2.1348 0.0096 31 1 -1.6365 -2.5790 1.1578 32 1 -0.8791 -1.3786 2.2929 33 1 -1.0375 -5.4751 3.1650 34 1 0.2891 -5.0773 4.5228 35 1 1.2604 -2.6136 3.4442 36 1 1.3350 -4.2959 2.7582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189058070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:50 Heat of formation + Delta-G solvation = -125.309820 kcal Electronic energy + Delta-G solvation = -24763.260953 eV Core-core repulsion = 20868.536327 eV Total energy + Delta-G solvation = -3894.724626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.23172 -40.54363 -40.37051 -38.53831 -37.10350 -36.10875 -34.25344 -34.01722 -32.09094 -29.39456 -28.40620 -27.08210 -26.19192 -24.43022 -23.19863 -21.67823 -20.16805 -19.86184 -18.91963 -18.39849 -18.34016 -17.93237 -16.95370 -16.87606 -16.69198 -16.14832 -15.72985 -15.62958 -15.25306 -14.95043 -14.83110 -14.73646 -14.58916 -14.41302 -14.03649 -13.72604 -13.57239 -13.36953 -13.11733 -13.10991 -12.79500 -12.70657 -12.51031 -12.35030 -12.27054 -11.95709 -11.88168 -11.05705 -10.67034 -10.41000 -10.34773 -10.11566 -9.78969 -8.59756 -6.40373 -0.85885 -0.52083 -0.03829 1.64635 1.68282 1.70682 1.89275 2.12980 2.59698 2.63283 2.86731 2.95958 3.04521 3.40466 3.44776 3.58853 3.87419 4.00183 4.05323 4.13697 4.33523 4.38600 4.46770 4.55790 4.57071 4.65576 4.77425 4.79095 4.82284 4.90678 5.01595 5.05538 5.16854 5.58199 5.59926 5.85238 6.17573 6.52482 7.01005 7.36519 8.72397 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.004397 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.632446 B = 6365.962325 C = 6965.661357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.046 3.954 3 C -0.177 4.177 4 C 0.152 3.848 5 F -0.129 7.129 6 C -0.179 4.179 7 C -0.001 4.001 8 C -0.706 4.706 9 S 2.715 3.285 10 O -0.988 6.988 11 O -0.975 6.975 12 N -1.025 6.025 13 C 0.148 3.852 14 C 0.196 3.804 15 O -0.578 6.578 16 C -0.625 4.625 17 H 0.070 0.930 18 C -0.005 4.005 19 N -0.922 5.922 20 Si 1.110 2.890 21 H -0.290 1.290 22 H -0.269 1.269 23 H -0.276 1.276 24 C 0.104 3.896 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.372 0.628 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 12.905 -7.629 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.044 3.956 3 C -0.196 4.196 4 C 0.133 3.867 5 F -0.107 7.107 6 C -0.199 4.199 7 C -0.020 4.020 8 C -0.795 4.795 9 S 2.812 3.188 10 O -0.979 6.979 11 O -0.966 6.966 12 N -0.865 5.865 13 C 0.024 3.976 14 C 0.153 3.847 15 O -0.385 6.385 16 C -0.663 4.663 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.560 5.560 20 Si 0.932 3.068 21 H -0.216 1.216 22 H -0.194 1.194 23 H -0.201 1.201 24 C -0.022 4.022 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.189 0.811 29 H 0.189 0.811 30 H 0.175 0.825 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.221 0.779 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.041 12.091 -7.568 15.128 hybrid contribution 1.290 0.824 -0.931 1.791 sum 6.330 12.915 -8.498 16.706 Atomic orbital electron populations 1.21875 0.88915 1.07513 1.05609 1.19600 0.97030 0.90688 0.88283 1.21393 0.92399 1.00071 1.05758 1.18048 0.90537 0.81484 0.96658 1.91545 1.80205 1.45925 1.93063 1.21484 1.02686 0.90274 1.05431 1.21010 0.91448 0.99962 0.89607 1.30853 1.07020 1.19996 1.21585 1.00961 0.72282 0.73689 0.71913 1.93484 1.61859 1.55917 1.86672 1.93474 1.60140 1.87367 1.55576 1.60013 1.27343 1.74078 1.25061 1.23067 0.81364 0.98743 0.94421 1.20500 0.88809 0.82489 0.92890 1.86218 1.80554 1.19613 1.52091 1.22539 1.44058 1.06507 0.93243 0.91187 1.27071 0.95784 0.92453 1.05356 1.71002 1.23110 1.30289 1.31571 0.83011 0.75449 0.76352 0.71964 1.21627 1.19401 1.20144 1.23818 1.01524 0.97532 0.79361 0.87822 0.86630 0.89276 0.81091 0.81108 0.82533 0.90060 0.86653 0.77925 0.92503 0.89101 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 8.60 71.24 0.61 -3.45 16 2 C 0.05 1.13 5.87 -19.87 -0.12 1.01 16 3 C -0.18 -3.66 9.68 22.31 0.22 -3.44 16 4 C 0.15 3.21 7.30 22.37 0.16 3.38 16 5 F -0.13 -2.60 17.27 44.97 0.78 -1.83 16 6 C -0.18 -3.73 10.03 22.31 0.22 -3.51 16 7 C 0.00 -0.02 9.55 22.26 0.21 0.19 16 8 C -0.71 -20.23 5.91 22.27 0.13 -20.10 16 9 S 2.71 95.87 5.54 -56.49 -0.31 95.56 16 10 O -0.99 -39.72 16.94 -128.00 -2.17 -41.88 16 11 O -0.97 -37.14 15.34 -128.00 -1.96 -39.11 16 12 N -1.03 -37.96 4.00 -533.17 -2.13 -40.09 16 13 C 0.15 5.42 7.00 86.48 0.61 6.03 16 14 C 0.20 8.79 1.08 -10.88 -0.01 8.78 16 15 O -0.58 -28.12 13.45 -148.98 -2.00 -30.12 16 16 C -0.62 -29.86 8.56 25.60 0.22 -29.64 16 17 H 0.07 3.20 7.85 -2.91 -0.02 3.18 16 18 C -0.01 -0.26 5.26 84.65 0.45 0.18 16 19 N -0.92 -48.44 12.80 21.45 0.27 -48.16 16 20 Si 1.11 44.11 29.93 68.60 2.05 46.16 16 21 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 24 C 0.10 4.28 7.40 86.48 0.64 4.92 16 25 H 0.10 2.10 6.22 -2.39 -0.01 2.09 16 26 H 0.12 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.09 2.41 4.78 -2.39 -0.01 2.40 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.16 3.71 7.33 -2.91 -0.02 3.69 16 31 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.12 3.51 6.71 -2.39 -0.02 3.49 16 33 H 0.37 18.19 6.95 -74.06 -0.52 17.68 16 34 H 0.26 13.73 5.52 -92.70 -0.51 13.22 16 35 H 0.09 3.57 8.09 -2.39 -0.02 3.55 16 36 H 0.06 2.49 7.80 -2.38 -0.02 2.48 16 Total: -1.00 -62.63 316.44 -1.25 -63.88 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.88 Total: 31.25 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.34 Total: -35.66 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -1.86 Total: -88.25 kcal Atomic # 8 Polarization: -104.98 SS G_CDS: -6.14 Total: -111.12 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.05 Total: 46.16 kcal Atomic # 16 Polarization: 95.87 SS G_CDS: -0.31 Total: 95.56 kcal Total: -62.63 -1.25 -63.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189058070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.427 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds