Wall clock time and date at job start Fri Apr 10 2020 18:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38274 * 119.98329 * 2 1 4 4 C 1.38220 * 120.04762 * 180.02562 * 3 2 1 5 5 C 1.38217 * 120.02949 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.01343 * 179.97438 * 5 4 3 7 7 O 1.42091 * 106.40381 * 1.45838 * 6 5 4 8 8 O 1.42105 * 106.40025 * 228.54134 * 6 5 4 9 9 N 1.65599 * 107.21918 * 115.00194 * 6 5 4 10 10 C 1.47581 * 134.49321 * 89.99966 * 9 6 5 11 11 C 1.53945 * 86.11895 * 155.35965 * 10 9 6 12 12 O 1.42904 * 113.73986 * 269.15696 * 11 10 9 13 13 C 1.50694 * 113.74220 * 137.95139 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47582 * 134.49014 * 269.99689 * 9 6 5 22 22 C 1.38443 * 119.97326 * 0.25579 * 5 4 3 23 23 F 1.35098 * 120.02437 * 179.71977 * 22 5 4 24 24 C 1.38168 * 119.99119 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46888 * 90.00123 * 1 2 3 26 26 H 1.09002 * 109.46946 * 209.99761 * 1 2 3 27 27 H 1.08994 * 109.47567 * 330.00101 * 1 2 3 28 28 H 1.07997 * 119.97631 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.98416 * 180.02562 * 4 3 2 30 30 H 1.09001 * 113.77016 * 41.05457 * 10 9 6 31 31 H 1.09005 * 113.86980 * 269.67531 * 10 9 6 32 32 H 0.96699 * 113.99284 * 178.07513 * 12 11 10 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.76615 * 90.34196 * 21 9 6 35 35 H 1.08991 * 113.77327 * 318.94063 * 21 9 6 36 36 H 1.08005 * 120.01489 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5802 1.1992 -0.0005 5 6 4.2733 0.0034 -0.0005 6 16 6.0352 0.0059 -0.0019 7 8 6.4346 1.3691 0.0319 8 8 6.4369 -0.8966 -1.0235 9 7 6.5275 -0.6613 1.4316 10 6 6.8359 -2.0324 1.8824 11 6 7.7207 -1.3690 2.9534 12 8 9.0760 -1.1780 2.5424 13 6 7.6035 -2.0035 4.3152 14 1 6.9427 -2.8446 4.4641 15 6 8.3401 -1.5101 5.3713 16 7 9.1453 -0.4862 5.1899 17 14 8.1943 -2.2962 7.0595 18 1 9.0829 -1.5863 8.0145 19 1 6.7884 -2.2041 7.5287 20 1 8.5963 -3.7233 6.9775 21 6 6.8340 -0.1237 2.7714 22 6 3.5825 -1.1964 -0.0054 23 9 4.2588 -2.3658 -0.0111 24 6 2.1976 -1.1967 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6574 2.1326 -0.0004 29 1 4.1189 2.1354 -0.0001 30 1 7.3943 -2.6194 1.1532 31 1 5.9776 -2.5661 2.2905 32 1 9.6279 -0.7349 3.2013 33 1 9.6631 -0.1389 5.9329 34 1 5.9740 -0.0951 3.4405 35 1 7.3908 0.8131 2.7520 36 1 1.6577 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189058474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:52 Heat of formation + Delta-G solvation = -104.735259 kcal Electronic energy + Delta-G solvation = -24675.754907 eV Core-core repulsion = 20781.922461 eV Total energy + Delta-G solvation = -3893.832446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.16896 -39.34141 -38.47113 -36.74782 -35.43543 -33.89393 -33.18506 -32.14328 -30.84819 -27.84254 -27.59765 -25.28855 -24.63699 -23.14144 -22.23434 -19.64441 -18.78466 -17.67624 -17.48860 -16.97922 -16.75900 -16.50444 -15.77280 -15.37266 -14.93946 -14.76071 -14.32843 -14.23323 -13.98057 -13.73226 -13.69380 -13.13570 -13.05225 -12.64203 -12.35890 -12.19364 -12.11134 -11.75438 -11.68125 -11.62532 -11.60543 -11.45742 -11.08293 -10.82735 -10.69129 -10.51375 -10.23265 -9.45592 -9.28474 -9.01715 -8.73975 -8.58125 -8.05475 -6.34274 -4.44732 0.45725 0.80342 0.95260 3.05363 3.18496 3.24700 3.26707 3.42290 3.89071 4.09623 4.21139 4.32336 4.45066 4.64046 4.86775 4.91017 5.02387 5.16304 5.18341 5.31840 5.42653 5.57006 5.65962 5.75990 5.84454 6.04026 6.08491 6.10000 6.34250 6.41013 6.58049 6.69347 6.77884 7.02429 7.51442 7.69005 7.87860 8.57684 9.25622 9.54284 10.72089 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.004475 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.489014 B = 6255.993015 C = 6884.367224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.012 4.012 3 C -0.156 4.156 4 C 0.008 3.992 5 C -0.722 4.722 6 S 2.697 3.303 7 O -0.958 6.958 8 O -0.954 6.954 9 N -1.020 6.020 10 C 0.133 3.867 11 C 0.247 3.753 12 O -0.572 6.572 13 C -0.536 4.536 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.274 1.274 21 C 0.104 3.896 22 C 0.202 3.798 23 F -0.118 7.118 24 C -0.179 4.179 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.393 0.607 33 H 0.274 0.726 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 2.081 -6.679 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.013 4.013 3 C -0.175 4.175 4 C -0.011 4.011 5 C -0.805 4.805 6 S 2.787 3.213 7 O -0.948 6.948 8 O -0.945 6.945 9 N -0.861 5.861 10 C 0.008 3.992 11 C 0.202 3.798 12 O -0.384 6.384 13 C -0.575 4.575 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.021 4.021 22 C 0.181 3.819 23 F -0.096 7.096 24 C -0.198 4.198 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.170 2.284 -8.022 17.312 hybrid contribution -0.690 -0.315 1.608 1.778 sum -15.861 1.969 -6.414 17.222 Atomic orbital electron populations 1.20932 0.89968 1.03728 1.03137 1.20029 0.96614 0.92354 0.92291 1.21219 0.94112 0.98109 1.04032 1.20894 0.94441 0.96433 0.89367 1.31607 1.30622 0.97855 1.20455 1.01955 0.72842 0.73407 0.73111 1.93526 1.80553 1.34075 1.86681 1.93564 1.80484 1.65337 1.55085 1.60194 1.79689 1.20392 1.25847 1.23107 0.97470 0.82556 0.96078 1.19837 0.80601 0.89082 0.90241 1.86048 1.21293 1.82793 1.48308 1.21522 1.26253 1.16885 0.92842 0.91073 1.25077 0.94101 0.94152 0.99722 1.69322 1.26987 1.24103 1.33300 0.86395 0.78191 0.79553 0.82354 1.21036 1.20015 1.19879 1.23934 0.99058 1.01717 0.77424 1.17053 0.90213 0.80120 0.94469 1.91624 1.80045 1.45311 1.92668 1.21079 0.92001 0.99730 1.06985 0.90139 0.90737 0.90599 0.84510 0.83078 0.90555 0.89927 0.75139 0.91568 0.90429 0.90795 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.01 -0.13 5.88 -104.63 -0.62 -0.74 16 3 C -0.16 -1.68 9.70 -39.57 -0.38 -2.06 16 4 C 0.01 0.10 9.55 -39.60 -0.38 -0.27 16 5 C -0.72 -11.78 5.91 -39.51 -0.23 -12.01 16 6 S 2.70 53.25 5.89 -107.50 -0.63 52.61 16 7 O -0.96 -20.18 16.94 -57.17 -0.97 -21.14 16 8 O -0.95 -20.99 17.39 -57.17 -0.99 -21.99 16 9 N -1.02 -21.33 4.11 -118.69 -0.49 -21.82 16 10 C 0.13 2.82 8.36 -2.97 -0.02 2.80 16 11 C 0.25 5.96 1.44 -90.84 -0.13 5.83 16 12 O -0.57 -14.91 13.48 -35.23 -0.48 -15.39 16 13 C -0.54 -13.37 8.62 -34.44 -0.30 -13.67 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 16 N -0.90 -22.86 11.09 55.43 0.61 -22.24 16 17 Si 0.91 19.40 29.54 -169.99 -5.02 14.38 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.10 2.29 8.37 -2.97 -0.02 2.27 16 22 C 0.20 3.13 7.21 -39.42 -0.28 2.85 16 23 F -0.12 -1.99 16.27 2.25 0.04 -1.95 16 24 C -0.18 -2.16 9.68 -39.52 -0.38 -2.54 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.15 1.89 7.33 -52.48 -0.38 1.50 16 30 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 32 H 0.39 10.32 6.46 45.56 0.29 10.61 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 35 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -30.48 328.97 -8.89 -39.37 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.43 Total: 9.48 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.49 Total: -16.27 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.13 Total: -44.06 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -2.44 Total: -58.52 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.63 Total: 52.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.48 -8.89 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189058474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.365 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds