Wall clock time and date at job start Fri Apr 10 2020 18:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38274 * 119.98329 * 2 1 4 4 C 1.38220 * 120.04762 * 180.02562 * 3 2 1 5 5 C 1.38217 * 120.02949 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.01343 * 179.97438 * 5 4 3 7 7 O 1.42091 * 106.40381 * 1.45838 * 6 5 4 8 8 O 1.42105 * 106.40025 * 228.54134 * 6 5 4 9 9 N 1.65599 * 107.21918 * 115.00194 * 6 5 4 10 10 C 1.47581 * 134.49321 * 89.99966 * 9 6 5 11 11 C 1.53945 * 86.11895 * 155.35965 * 10 9 6 12 12 O 1.42904 * 113.73986 * 269.15696 * 11 10 9 13 13 C 1.50694 * 113.74220 * 137.95139 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47582 * 134.49014 * 269.99689 * 9 6 5 22 22 C 1.38443 * 119.97326 * 0.25579 * 5 4 3 23 23 F 1.35098 * 120.02437 * 179.71977 * 22 5 4 24 24 C 1.38168 * 119.99119 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46888 * 90.00123 * 1 2 3 26 26 H 1.09002 * 109.46946 * 209.99761 * 1 2 3 27 27 H 1.08994 * 109.47567 * 330.00101 * 1 2 3 28 28 H 1.07997 * 119.97631 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.98416 * 180.02562 * 4 3 2 30 30 H 1.09001 * 113.77016 * 41.05457 * 10 9 6 31 31 H 1.09005 * 113.86980 * 269.67531 * 10 9 6 32 32 H 0.96699 * 113.99284 * 178.07513 * 12 11 10 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.76615 * 90.34196 * 21 9 6 35 35 H 1.08991 * 113.77327 * 318.94063 * 21 9 6 36 36 H 1.08005 * 120.01489 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5802 1.1992 -0.0005 5 6 4.2733 0.0034 -0.0005 6 16 6.0352 0.0059 -0.0019 7 8 6.4346 1.3691 0.0319 8 8 6.4369 -0.8966 -1.0235 9 7 6.5275 -0.6613 1.4316 10 6 6.8359 -2.0324 1.8824 11 6 7.7207 -1.3690 2.9534 12 8 9.0760 -1.1780 2.5424 13 6 7.6035 -2.0035 4.3152 14 1 6.9427 -2.8446 4.4641 15 6 8.3401 -1.5101 5.3713 16 7 9.1453 -0.4862 5.1899 17 14 8.1943 -2.2962 7.0595 18 1 9.0829 -1.5863 8.0145 19 1 6.7884 -2.2041 7.5287 20 1 8.5963 -3.7233 6.9775 21 6 6.8340 -0.1237 2.7714 22 6 3.5825 -1.1964 -0.0054 23 9 4.2588 -2.3658 -0.0111 24 6 2.1976 -1.1967 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6574 2.1326 -0.0004 29 1 4.1189 2.1354 -0.0001 30 1 7.3943 -2.6194 1.1532 31 1 5.9776 -2.5661 2.2905 32 1 9.6279 -0.7349 3.2013 33 1 9.6631 -0.1389 5.9329 34 1 5.9740 -0.0951 3.4405 35 1 7.3908 0.8131 2.7520 36 1 1.6577 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189058474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:51 Heat of formation + Delta-G solvation = -127.451145 kcal Electronic energy + Delta-G solvation = -24676.739942 eV Core-core repulsion = 20781.922461 eV Total energy + Delta-G solvation = -3894.817481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.34718 -40.30532 -40.23746 -38.39454 -37.09165 -35.80048 -34.09490 -34.05907 -31.81469 -29.61948 -28.42396 -27.03198 -26.45343 -24.13315 -23.19957 -21.42827 -20.22007 -19.40504 -19.03998 -18.36141 -17.95485 -17.86541 -17.15624 -16.98985 -16.61183 -16.01839 -15.85835 -15.40113 -15.29728 -14.91736 -14.80856 -14.67450 -14.58169 -13.92355 -13.51380 -13.39936 -13.35649 -13.31031 -13.28211 -13.12457 -13.04884 -12.82984 -12.60134 -12.54983 -12.23416 -12.17066 -11.95108 -11.13981 -10.62544 -10.39706 -10.34690 -10.02657 -9.83616 -8.22227 -6.39859 -0.84743 -0.47437 -0.01618 1.49987 1.52030 1.59574 1.73871 2.22248 2.42614 2.60014 2.85347 2.97328 3.06822 3.51005 3.62469 3.69509 3.98090 4.08955 4.25646 4.31615 4.43114 4.49860 4.60381 4.64637 4.68004 4.80670 4.88003 4.89799 4.96308 5.02442 5.19087 5.20652 5.28705 5.67663 5.70408 5.79613 5.98206 6.66230 7.33045 7.51498 8.83616 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.004475 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.489014 B = 6255.993015 C = 6884.367224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.001 3.999 3 C -0.145 4.145 4 C -0.007 4.007 5 C -0.737 4.737 6 S 2.707 3.293 7 O -0.980 6.980 8 O -0.986 6.986 9 N -1.028 6.028 10 C 0.139 3.861 11 C 0.221 3.779 12 O -0.588 6.588 13 C -0.553 4.553 14 H 0.077 0.923 15 C 0.030 3.970 16 N -0.920 5.920 17 Si 0.971 3.029 18 H -0.285 1.285 19 H -0.266 1.266 20 H -0.273 1.273 21 C 0.112 3.888 22 C 0.173 3.827 23 F -0.135 7.135 24 C -0.176 4.176 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.155 0.845 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.387 0.613 33 H 0.275 0.725 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.263 2.233 -6.212 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 C -0.164 4.164 4 C -0.026 4.026 5 C -0.826 4.826 6 S 2.803 3.197 7 O -0.971 6.971 8 O -0.977 6.977 9 N -0.868 5.868 10 C 0.014 3.986 11 C 0.177 3.823 12 O -0.400 6.400 13 C -0.592 4.592 14 H 0.095 0.905 15 C -0.170 4.170 16 N -0.561 5.561 17 Si 0.796 3.204 18 H -0.210 1.210 19 H -0.191 1.191 20 H -0.199 1.199 21 C -0.013 4.013 22 C 0.153 3.847 23 F -0.113 7.113 24 C -0.196 4.196 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.194 0.806 29 H 0.173 0.827 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.849 2.427 -7.557 20.452 hybrid contribution 0.302 -0.305 1.372 1.438 sum -18.547 2.122 -6.184 19.665 Atomic orbital electron populations 1.21079 0.86500 1.05351 1.04698 1.20603 0.98900 0.91291 0.89104 1.21690 0.92769 1.00193 1.01741 1.21143 0.96116 0.95509 0.89814 1.30886 1.27399 0.99770 1.24558 1.01105 0.74192 0.72354 0.72083 1.93485 1.82095 1.34838 1.86722 1.93516 1.82260 1.66036 1.55877 1.60022 1.81276 1.19947 1.25569 1.23077 0.97637 0.82806 0.95083 1.20221 0.80068 0.90759 0.91230 1.86033 1.22627 1.82892 1.48483 1.21785 1.26708 1.17311 0.93405 0.90474 1.25812 0.93737 0.94505 1.02996 1.69408 1.27470 1.25009 1.34164 0.85404 0.78374 0.78398 0.78192 1.21018 1.19121 1.19867 1.23718 0.99067 1.00110 0.78416 1.17430 0.91683 0.79280 0.96348 1.91578 1.80635 1.46019 1.93057 1.21477 0.90456 1.01887 1.05742 0.88285 0.89524 0.88698 0.80555 0.82692 0.91293 0.87634 0.75757 0.91482 0.88914 0.92332 0.81363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 71.24 0.71 -0.15 16 2 C 0.00 0.02 5.88 -19.87 -0.12 -0.09 16 3 C -0.15 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.01 -0.17 9.55 22.26 0.21 0.04 16 5 C -0.74 -23.80 5.91 22.31 0.13 -23.67 16 6 S 2.71 110.33 5.89 -56.49 -0.33 110.00 16 7 O -0.98 -42.74 16.94 -128.00 -2.17 -44.90 16 8 O -0.99 -45.18 17.39 -128.00 -2.23 -47.41 16 9 N -1.03 -44.25 4.11 -533.25 -2.19 -46.45 16 10 C 0.14 6.04 8.36 86.48 0.72 6.76 16 11 C 0.22 10.94 1.44 -10.88 -0.02 10.92 16 12 O -0.59 -31.95 13.48 -148.98 -2.01 -33.96 16 13 C -0.55 -27.80 8.62 25.60 0.22 -27.58 16 14 H 0.08 3.68 7.81 -2.91 -0.02 3.65 16 15 C 0.03 1.48 5.40 84.66 0.46 1.94 16 16 N -0.92 -47.64 11.09 21.45 0.24 -47.40 16 17 Si 0.97 39.53 29.54 68.60 2.03 41.55 16 18 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 C 0.11 5.09 8.37 86.48 0.72 5.82 16 22 C 0.17 5.21 7.21 22.38 0.16 5.37 16 23 F -0.13 -4.54 16.27 44.97 0.73 -3.81 16 24 C -0.18 -3.73 9.68 22.31 0.22 -3.52 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 28 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 29 H 0.16 3.73 7.33 -2.91 -0.02 3.71 16 30 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.11 4.03 8.09 -2.38 -0.02 4.01 16 32 H 0.39 21.30 6.46 -74.06 -0.48 20.82 16 33 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.09 3.84 8.09 -2.39 -0.02 3.82 16 35 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -67.94 328.97 -1.64 -69.59 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.65 Total: 29.28 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.64 Total: -26.49 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -1.96 Total: -93.85 kcal Atomic # 8 Polarization: -119.87 SS G_CDS: -6.40 Total: -126.28 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.73 Total: -3.81 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 16 Polarization: 110.33 SS G_CDS: -0.33 Total: 110.00 kcal Total: -67.94 -1.64 -69.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189058474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.862 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds