Wall clock time and date at job start Fri Apr 10 2020 18:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 119.97523 * 2 1 4 4 C 1.38173 * 120.02721 * 179.97438 * 3 2 1 5 5 C 1.38486 * 119.97274 * 359.79052 * 4 3 2 6 6 F 1.35099 * 120.02372 * 180.25110 * 5 4 3 7 7 C 1.38436 * 119.94868 * 0.49190 * 5 4 3 8 8 C 1.38224 * 119.97175 * 180.02562 * 2 1 3 9 9 S 1.76192 * 119.98988 * 359.97438 * 8 2 1 10 10 O 1.42106 * 106.40408 * 48.56507 * 9 8 2 11 11 O 1.42100 * 106.40337 * 181.48133 * 9 8 2 12 12 N 1.65597 * 107.22043 * 295.02485 * 9 8 2 13 13 C 1.47073 * 136.05367 * 269.63157 * 12 9 8 14 14 C 1.53756 * 87.88439 * 152.96150 * 13 12 9 15 15 O 1.42898 * 114.39258 * 272.67385 * 14 13 12 16 16 C 1.50703 * 114.26577 * 139.79204 * 14 13 12 17 17 H 1.07998 * 119.99682 * 266.47297 * 16 14 13 18 18 C 1.37869 * 120.00119 * 86.47364 * 16 14 13 19 19 N 1.31517 * 120.00087 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00274 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47120 * 59.99651 * 20 18 16 22 22 H 1.48497 * 109.47571 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46799 * 300.00163 * 20 18 16 24 24 C 1.47059 * 136.06056 * 89.99774 * 12 9 8 25 25 H 1.09002 * 109.47142 * 269.97375 * 1 2 3 26 26 H 1.09004 * 109.47224 * 29.97165 * 1 2 3 27 27 H 1.09004 * 109.47303 * 149.97660 * 1 2 3 28 28 H 1.08000 * 119.98663 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.01731 * 180.02562 * 4 3 2 30 30 H 1.08002 * 120.01620 * 179.77014 * 7 5 4 31 31 H 1.09002 * 113.46343 * 267.68611 * 13 12 9 32 32 H 1.08997 * 113.47067 * 38.13247 * 13 12 9 33 33 H 0.96708 * 114.00023 * 273.58707 * 15 14 13 34 34 H 0.97007 * 120.00273 * 179.97438 * 19 18 16 35 35 H 1.09005 * 113.46809 * 321.86492 * 24 12 9 36 36 H 1.08998 * 113.47165 * 92.30515 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1990 0.0005 5 6 4.2725 0.0000 0.0055 6 9 5.6235 0.0000 0.0111 7 6 3.5798 -1.1986 -0.0005 8 6 2.1975 -1.1974 -0.0005 9 16 1.3155 -2.7227 -0.0005 10 8 0.3333 -2.6183 -1.0221 11 8 2.2943 -3.7522 0.0341 12 7 0.4914 -2.8125 1.4330 13 6 0.7628 -3.3388 2.7793 14 6 -0.2292 -2.2980 3.3241 15 8 0.3513 -1.0250 3.6147 16 6 -1.1225 -2.8105 4.4243 17 1 -2.0973 -3.2098 4.1864 18 6 -0.6953 -2.7695 5.7345 19 7 0.4921 -2.2837 6.0242 20 14 -1.8028 -3.4041 7.0984 21 1 -2.1041 -4.8391 6.8640 22 1 -1.1159 -3.2502 8.4059 23 1 -3.0688 -2.6279 7.1094 24 6 -0.8361 -2.4069 1.9185 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6572 2.1327 0.0004 29 1 4.1189 2.1346 0.0010 30 1 4.1191 -2.1343 -0.0004 31 1 0.4317 -4.3680 2.9178 32 1 1.7889 -3.1773 3.1098 33 1 0.7328 -0.9597 4.5009 34 1 0.7925 -2.2545 6.9461 35 1 -1.1724 -1.4514 1.5157 36 1 -1.5887 -3.1904 1.8301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189062833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:59 Heat of formation + Delta-G solvation = -116.023687 kcal Electronic energy + Delta-G solvation = -25063.134553 eV Core-core repulsion = 21168.812604 eV Total energy + Delta-G solvation = -3894.321949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04392 -40.44416 -40.23779 -38.51801 -37.11071 -35.78166 -34.01410 -33.63092 -32.57138 -29.61398 -27.93654 -26.62001 -26.49279 -24.75400 -22.99395 -21.45564 -20.09681 -19.57507 -18.93051 -18.37777 -17.90215 -17.12584 -17.01418 -16.78277 -16.64045 -16.56749 -16.01119 -15.55678 -14.99912 -14.91068 -14.78600 -14.72969 -14.62087 -13.84113 -13.72557 -13.45120 -13.40648 -13.35822 -13.29331 -12.97360 -12.86661 -12.67794 -12.65312 -12.47857 -12.18707 -12.02603 -11.72352 -11.03728 -10.65934 -10.54996 -10.25685 -9.82717 -9.70197 -8.20521 -6.36291 -0.83688 -0.40934 -0.03090 1.51634 1.53751 1.60260 1.80097 2.21435 2.44720 2.58071 2.94022 3.03558 3.21470 3.53389 3.67939 3.72250 3.77801 4.07050 4.30395 4.32841 4.44380 4.50841 4.59535 4.67532 4.76212 4.77220 4.81247 4.93747 5.00142 5.05801 5.18576 5.23899 5.29115 5.68246 5.74265 5.86703 6.03322 6.70649 7.37150 7.58198 8.84296 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004793 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.540079 B = 5840.023168 C = 6299.215413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.015 3.985 3 C -0.110 4.110 4 C -0.085 4.085 5 C 0.055 3.945 6 F -0.140 7.140 7 C -0.073 4.073 8 C -0.664 4.664 9 S 2.730 3.270 10 O -0.969 6.969 11 O -0.990 6.990 12 N -1.038 6.038 13 C 0.105 3.895 14 C 0.224 3.776 15 O -0.576 6.576 16 C -0.549 4.549 17 H 0.077 0.923 18 C 0.031 3.969 19 N -0.920 5.920 20 Si 0.965 3.035 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.271 1.271 24 C 0.131 3.869 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.180 0.820 29 H 0.179 0.821 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.387 0.613 34 H 0.274 0.726 35 H 0.089 0.911 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 7.263 -8.927 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 C -0.128 4.128 4 C -0.103 4.103 5 C 0.035 3.965 6 F -0.119 7.119 7 C -0.093 4.093 8 C -0.753 4.753 9 S 2.825 3.175 10 O -0.960 6.960 11 O -0.981 6.981 12 N -0.878 5.878 13 C -0.021 4.021 14 C 0.181 3.819 15 O -0.388 6.388 16 C -0.587 4.587 17 H 0.095 0.905 18 C -0.169 4.169 19 N -0.561 5.561 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.196 1.196 24 C 0.007 3.993 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.198 0.802 29 H 0.196 0.804 30 H 0.164 0.836 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.242 0.758 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.778 6.806 -10.289 12.464 hybrid contribution 0.785 -0.204 1.650 1.839 sum 2.564 6.602 -8.639 11.171 Atomic orbital electron populations 1.21891 0.89351 1.07260 1.05085 1.19931 0.97240 0.91838 0.89658 1.21500 0.93331 0.98838 0.99130 1.21824 0.95301 0.97691 0.95487 1.17802 0.77107 0.95027 1.06576 1.91496 1.28651 1.97418 1.94311 1.20919 0.92866 0.99167 0.96328 1.30585 1.05117 1.20698 1.18859 1.00427 0.72381 0.73390 0.71290 1.93479 1.59881 1.87274 1.55360 1.93484 1.62205 1.55781 1.86660 1.59531 1.27869 1.74285 1.26094 1.23620 1.00858 1.00335 0.77304 1.19929 0.89364 0.81527 0.91115 1.85961 1.78850 1.33583 1.40416 1.21779 1.03525 1.41598 0.91847 0.90456 1.25732 0.96027 0.94199 1.00950 1.69339 1.19366 1.46605 1.20796 0.85494 0.78819 0.78960 0.77645 1.19656 1.21384 1.19568 1.23106 0.83429 1.00619 0.92176 0.88492 0.86557 0.89304 0.80239 0.80385 0.83609 0.89717 0.93342 0.75806 0.91654 0.89263 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 8.28 71.24 0.59 -4.11 16 2 C 0.01 0.43 5.87 -19.86 -0.12 0.31 16 3 C -0.11 -2.42 9.70 22.26 0.22 -2.21 16 4 C -0.08 -1.85 10.03 22.31 0.22 -1.62 16 5 C 0.05 1.54 7.30 22.38 0.16 1.70 16 6 F -0.14 -3.88 17.27 44.97 0.78 -3.10 16 7 C -0.07 -2.34 9.53 22.31 0.21 -2.12 16 8 C -0.66 -22.13 5.91 22.26 0.13 -22.00 16 9 S 2.73 100.91 5.58 -56.49 -0.31 100.59 16 10 O -0.97 -36.53 15.37 -128.00 -1.97 -38.50 16 11 O -0.99 -41.18 16.97 -128.00 -2.17 -43.35 16 12 N -1.04 -39.80 4.10 -549.92 -2.25 -42.05 16 13 C 0.10 4.47 8.17 83.26 0.68 5.15 16 14 C 0.22 9.90 1.58 -11.12 -0.02 9.88 16 15 O -0.58 -26.83 13.55 -148.98 -2.02 -28.85 16 16 C -0.55 -25.80 8.70 25.60 0.22 -25.58 16 17 H 0.08 3.46 7.81 -2.91 -0.02 3.44 16 18 C 0.03 1.47 5.39 84.65 0.46 1.93 16 19 N -0.92 -45.57 11.01 21.44 0.24 -45.33 16 20 Si 0.97 38.36 29.54 68.60 2.03 40.39 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 24 C 0.13 4.85 7.75 83.18 0.64 5.50 16 25 H 0.10 2.74 6.19 -2.39 -0.01 2.73 16 26 H 0.12 2.15 8.09 -2.39 -0.02 2.13 16 27 H 0.09 2.59 4.76 -2.38 -0.01 2.58 16 28 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.15 4.67 7.33 -2.91 -0.02 4.65 16 31 H 0.08 3.50 8.10 -2.39 -0.02 3.48 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.39 19.16 6.33 -74.05 -0.47 18.69 16 34 H 0.27 13.02 8.31 -92.70 -0.77 12.24 16 35 H 0.09 2.95 5.09 -2.38 -0.01 2.94 16 36 H 0.10 3.43 8.10 -2.39 -0.02 3.41 16 Total: -1.00 -58.91 317.27 -1.60 -60.52 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.68 Total: 32.86 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.41 Total: -33.17 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.02 Total: -87.38 kcal Atomic # 8 Polarization: -104.54 SS G_CDS: -6.16 Total: -110.70 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 100.91 SS G_CDS: -0.31 Total: 100.59 kcal Total: -58.91 -1.60 -60.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189062833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.507 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds