Wall clock time and date at job start Fri Apr 10 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00197 * 2 1 4 4 C 1.53003 * 109.47458 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47111 * 64.99809 * 4 3 2 6 6 C 1.35899 * 117.00113 * 180.02562 * 5 4 3 7 7 C 1.38729 * 120.05791 * 180.02562 * 6 5 4 8 8 C 1.38145 * 119.94260 * 180.02562 * 7 6 5 9 9 C 1.38255 * 120.05750 * 0.02562 * 8 7 6 10 10 S 1.76207 * 119.94441 * 179.97438 * 9 8 7 11 11 O 1.42098 * 106.39880 * 336.45872 * 10 9 8 12 12 O 1.42098 * 106.40225 * 203.54096 * 10 9 8 13 13 N 1.65598 * 107.21755 * 89.99959 * 10 9 8 14 14 C 1.46503 * 119.99877 * 90.00256 * 13 10 9 15 15 C 1.36931 * 120.00246 * 270.00324 * 13 10 9 16 16 H 1.07998 * 120.00191 * 23.09372 * 15 13 10 17 17 C 1.38808 * 120.00150 * 203.10109 * 15 13 10 18 18 N 1.31623 * 120.00217 * 11.87751 * 17 15 13 19 19 Si 1.86800 * 120.00106 * 191.88281 * 17 15 13 20 20 H 1.48498 * 109.47221 * 89.99923 * 19 17 15 21 21 H 1.48502 * 109.47199 * 209.99651 * 19 17 15 22 22 H 1.48504 * 109.47312 * 329.99532 * 19 17 15 23 23 C 1.38271 * 120.11169 * 0.25666 * 9 8 7 24 24 C 1.38138 * 120.05591 * 359.44379 * 23 9 8 25 25 H 1.09000 * 109.46920 * 60.00524 * 1 2 3 26 26 H 1.08999 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47200 * 300.00111 * 1 2 3 28 28 H 1.09001 * 109.47411 * 59.99460 * 3 2 1 29 29 H 1.08998 * 109.46853 * 300.00068 * 3 2 1 30 30 H 1.09001 * 109.46931 * 304.99948 * 4 3 2 31 31 H 1.08996 * 109.47169 * 184.99724 * 4 3 2 32 32 H 1.08000 * 120.02211 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.96914 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.47187 * 95.05648 * 14 13 10 35 35 H 1.09001 * 109.47196 * 215.05760 * 14 13 10 36 36 H 1.09001 * 109.46796 * 335.05447 * 14 13 10 37 37 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.96878 * 179.70234 * 23 9 8 39 39 H 1.08002 * 120.02881 * 180.24727 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3031 0.3973 -1.3807 7 6 5.7907 -0.1843 -2.5420 8 6 7.1503 -0.3686 -2.7025 9 6 8.0249 0.0256 -1.7069 10 16 9.7585 -0.2115 -1.9144 11 8 9.9095 -1.2655 -2.8554 12 8 10.3175 -0.2494 -0.6086 13 7 10.3563 1.1520 -2.6396 14 6 10.8279 2.2709 -1.8198 15 6 10.4099 1.2337 -4.0054 16 1 9.7550 0.6229 -4.6090 17 6 11.3060 2.1015 -4.6142 18 7 12.2582 2.6689 -3.9044 19 14 11.1607 2.4641 -6.4409 20 1 10.2715 3.6360 -6.6437 21 1 12.5059 2.7618 -6.9951 22 1 10.5892 1.2829 -7.1362 23 6 7.5410 0.6002 -0.5460 24 6 6.1827 0.7923 -0.3832 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.1078 -0.4935 -3.3194 33 1 7.5304 -0.8217 -3.6061 34 1 11.9057 2.1892 -1.6790 35 1 10.5972 3.2110 -2.3209 36 1 10.3316 2.2449 -0.8497 37 1 12.8847 3.2751 -4.3299 38 1 8.2259 0.9028 0.2323 39 1 5.8056 1.2448 0.5220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195134549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:17 Heat of formation + Delta-G solvation = -113.101933 kcal Electronic energy + Delta-G solvation = -24088.507292 eV Core-core repulsion = 20317.772345 eV Total energy + Delta-G solvation = -3770.734947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.20673 -38.32288 -37.17152 -36.23023 -35.38928 -34.79672 -31.56827 -31.08190 -30.77631 -29.47713 -26.74040 -26.21565 -23.97712 -23.40149 -22.68019 -21.77455 -18.63920 -18.45589 -17.56429 -17.20378 -16.68785 -16.29589 -16.22509 -15.95308 -15.44638 -15.13087 -14.56859 -14.39582 -14.22287 -13.57554 -13.38519 -13.13657 -12.96376 -12.92199 -12.63569 -12.38344 -11.98817 -11.83825 -11.67297 -11.20041 -11.16151 -11.12598 -11.10859 -10.88352 -10.83518 -10.54845 -10.30278 -10.21531 -10.11719 -9.94739 -9.03990 -8.92762 -8.41839 -7.86156 -6.07129 -3.79629 1.12446 1.45948 1.52575 2.93442 3.27462 3.31390 3.34123 3.37609 3.64570 4.20315 4.46323 4.51883 4.68100 4.76510 4.78734 4.82184 4.87032 4.94868 4.98252 5.02834 5.19296 5.21966 5.29982 5.31320 5.47573 5.62391 5.80569 6.06361 6.12783 6.29185 6.32805 6.46279 6.68775 6.79590 6.95345 7.24420 7.30646 7.56518 7.73225 8.53816 9.09754 9.46457 10.96819 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.003286 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.645826 B = 8519.792978 C = 9086.315465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.058 3.942 5 O -0.306 6.306 6 C 0.169 3.831 7 C -0.174 4.174 8 C 0.023 3.977 9 C -0.700 4.700 10 S 2.679 3.321 11 O -0.966 6.966 12 O -0.986 6.986 13 N -0.854 5.854 14 C 0.137 3.863 15 C -0.315 4.315 16 H 0.097 0.903 17 C 0.038 3.962 18 N -0.888 5.888 19 Si 0.916 3.084 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.016 3.984 24 C -0.235 4.235 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.139 0.861 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 0.508 7.934 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.018 4.018 5 O -0.219 6.219 6 C 0.123 3.877 7 C -0.194 4.194 8 C 0.004 3.996 9 C -0.784 4.784 10 S 2.768 3.232 11 O -0.956 6.956 12 O -0.976 6.976 13 N -0.689 5.689 14 C -0.009 4.009 15 C -0.445 4.445 16 H 0.114 0.886 17 C -0.166 4.166 18 N -0.528 5.528 19 Si 0.743 3.257 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.003 4.003 24 C -0.254 4.254 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.157 0.843 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.935 -0.323 8.054 20.579 hybrid contribution -0.911 1.151 -0.739 1.644 sum -19.846 0.828 7.315 21.168 Atomic orbital electron populations 1.22764 0.80790 1.03042 0.99963 1.87979 1.19857 1.27087 1.95412 1.22584 0.91493 0.85803 1.01501 1.22895 0.93708 0.98533 0.86638 1.86127 1.20262 1.76398 1.39078 1.19192 0.81937 0.92471 0.94097 1.20509 0.95794 1.05781 0.97295 1.20780 0.91616 0.90552 0.96678 1.31590 1.28836 1.15619 1.02328 1.02086 0.74224 0.74184 0.72743 1.93476 1.85488 1.53963 1.62691 1.93472 1.76363 1.87152 1.40662 1.52639 1.73056 1.29920 1.13301 1.21103 0.99615 0.90306 0.89901 1.19102 1.19972 1.25935 0.79443 0.88572 1.25125 0.94517 0.97969 0.98959 1.70066 1.15595 1.31331 1.35811 0.86111 0.77439 0.78784 0.83344 1.20720 1.21099 1.19470 1.20708 0.94963 0.89943 0.94679 1.21258 0.94346 1.09471 1.00365 0.93881 0.89437 0.94069 0.91009 0.91947 0.90793 0.90062 0.84676 0.83560 0.91983 0.92015 0.95981 0.92706 0.84291 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.92 10.67 -40.08 -0.43 -4.35 16 3 C 0.06 0.50 6.32 37.16 0.23 0.73 16 4 C 0.06 0.54 5.12 37.16 0.19 0.73 16 5 O -0.31 -4.06 10.10 -24.27 -0.25 -4.31 16 6 C 0.17 2.51 6.69 -39.22 -0.26 2.25 16 7 C -0.17 -2.71 9.99 -39.43 -0.39 -3.11 16 8 C 0.02 0.40 9.51 -39.61 -0.38 0.02 16 9 C -0.70 -13.28 5.98 -39.56 -0.24 -13.51 16 10 S 2.68 60.50 5.60 -107.50 -0.60 59.90 16 11 O -0.97 -23.99 16.37 -57.17 -0.94 -24.93 16 12 O -0.99 -23.17 16.24 -57.17 -0.93 -24.10 16 13 N -0.85 -21.18 3.31 -66.69 -0.22 -21.41 16 14 C 0.14 3.21 8.60 59.85 0.51 3.73 16 15 C -0.31 -8.34 9.17 -15.06 -0.14 -8.48 16 16 H 0.10 2.46 7.68 -52.49 -0.40 2.06 16 17 C 0.04 1.02 5.12 -17.43 -0.09 0.93 16 18 N -0.89 -24.33 10.65 55.49 0.59 -23.74 16 19 Si 0.92 20.69 29.57 -169.99 -5.03 15.66 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.02 0.27 9.52 -39.61 -0.38 -0.11 16 24 C -0.23 -3.36 9.04 -39.43 -0.36 -3.72 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 31 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.15 2.47 7.61 -52.49 -0.40 2.07 16 34 H 0.06 1.56 7.35 -51.93 -0.38 1.17 16 35 H 0.06 1.47 7.31 -51.93 -0.38 1.09 16 36 H 0.02 0.44 7.61 -51.93 -0.40 0.04 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.14 2.13 7.61 -52.49 -0.40 1.73 16 39 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -33.53 343.75 -7.95 -41.48 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.16 Total: -0.18 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.18 Total: -19.21 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.37 Total: -45.15 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -2.54 Total: -57.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 60.50 SS G_CDS: -0.60 Total: 59.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.53 -7.95 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195134549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.620 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds