Wall clock time and date at job start Fri Apr 10 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30064 * 126.15708 * 2 1 4 4 N 1.39765 * 110.33129 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.34742 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46727 * 90.02589 * 5 4 3 7 7 H 1.07996 * 120.00216 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99480 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99820 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00436 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46988 * 89.99692 * 10 8 6 12 12 H 1.48492 * 109.47137 * 210.00106 * 10 8 6 13 13 H 1.48502 * 109.47001 * 330.00233 * 10 8 6 14 14 C 1.37172 * 109.30187 * 0.02562 * 4 3 2 15 15 N 1.32071 * 132.89139 * 180.02562 * 14 4 3 16 16 C 1.33391 * 121.71106 * 179.97438 * 15 14 4 17 17 C 1.40857 * 120.57533 * 180.02562 * 16 15 14 18 18 C 1.35948 * 119.83370 * 179.97438 * 17 16 15 19 19 C 1.39489 * 121.15247 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.57092 * 180.02562 * 19 18 17 21 21 C 1.36013 * 120.85769 * 0.02562 * 19 18 17 22 22 C 1.40682 * 119.63531 * 0.02562 * 21 19 18 23 23 C 1.40370 * 121.05410 * 180.02562 * 22 21 19 24 24 Cl 1.73598 * 121.08737 * 359.97438 * 23 22 21 25 25 C 1.39150 * 117.82421 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47628 * 90.02528 * 1 2 3 27 27 H 1.09002 * 109.46861 * 210.02349 * 1 2 3 28 28 H 1.09001 * 109.47517 * 330.01872 * 1 2 3 29 29 H 1.08997 * 109.46741 * 210.02165 * 5 4 3 30 30 H 1.08992 * 109.47098 * 330.02740 * 5 4 3 31 31 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 32 32 H 1.08003 * 120.08830 * 359.96906 * 17 16 15 33 33 H 1.08000 * 119.42444 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.46946 * 269.97654 * 20 19 18 35 35 H 1.08992 * 109.46946 * 29.97523 * 20 19 18 36 36 H 1.08997 * 109.47285 * 149.98340 * 20 19 18 37 37 H 1.08006 * 120.18023 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0501 0.0000 4 7 3.6190 0.6690 0.0006 5 6 4.7604 1.5875 0.0002 6 6 5.1517 1.9029 1.4210 7 1 4.6053 1.4628 2.2420 8 6 6.2081 2.7525 1.6725 9 7 6.5500 3.0274 2.9124 10 14 7.1546 3.5120 0.2525 11 1 6.5281 4.8044 -0.1250 12 1 8.5620 3.7457 0.6645 13 1 7.1261 2.5896 -0.9110 14 6 3.7022 -0.7002 0.0004 15 7 4.7225 -1.5388 0.0012 16 6 4.5437 -2.8606 0.0013 17 6 5.6494 -3.7333 0.0027 18 6 5.4497 -5.0780 0.0033 19 6 4.1630 -5.6164 0.0030 20 6 3.9829 -7.1127 0.0043 21 6 3.0687 -4.8086 0.0017 22 6 3.2353 -3.4117 0.0000 23 6 2.1270 -2.5503 -0.0009 24 17 0.5069 -3.1741 -0.0005 25 6 2.3693 -1.1801 -0.0020 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5135 29 1 5.6013 1.1217 -0.5134 30 1 4.4854 2.5084 -0.5139 31 1 7.2929 3.6253 3.0894 32 1 6.6534 -3.3351 0.0032 33 1 6.3023 -5.7410 0.0039 34 1 3.9396 -7.4743 -1.0231 35 1 4.8229 -7.5793 0.5186 36 1 3.0557 -7.3666 0.5181 37 1 2.0774 -5.2373 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255186979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:23 Heat of formation + Delta-G solvation = 107.858405 kcal Electronic energy + Delta-G solvation = -23031.461854 eV Core-core repulsion = 19607.866430 eV Total energy + Delta-G solvation = -3423.595423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37673 -39.49730 -36.99659 -36.28518 -34.25989 -32.83395 -32.33767 -31.40884 -29.61967 -29.47767 -27.32101 -25.93965 -24.27768 -22.85256 -21.96584 -21.55251 -19.41286 -18.48948 -17.33585 -17.12122 -16.34448 -15.31764 -15.28492 -14.92152 -14.38257 -14.21784 -14.11953 -13.94656 -13.60629 -13.27618 -13.19231 -12.83598 -12.61472 -12.47254 -12.41595 -12.18749 -12.07305 -11.75576 -11.41643 -11.15171 -11.09089 -10.79987 -10.72014 -10.44415 -10.34862 -9.94425 -9.66200 -9.22215 -8.76883 -8.74073 -8.41476 -7.27507 -6.22558 -4.25018 0.11057 1.01010 1.78083 1.79139 2.66610 2.76846 2.98139 3.19409 3.26525 3.27572 4.16077 4.25594 4.28401 4.41765 4.54458 4.71908 4.79075 4.97343 5.09422 5.12094 5.16814 5.26971 5.43967 5.47636 5.60685 5.64884 5.71207 5.73733 5.84044 5.90050 6.06938 6.23761 6.31554 6.46095 6.51143 6.52899 6.77869 6.83534 7.29929 7.36985 7.91283 8.23890 8.35676 8.79491 9.32352 10.90242 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.004737 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.232035 B = 5908.969625 C = 7560.278808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.082 3.918 3 N -0.205 5.205 4 N -0.360 5.360 5 C 0.241 3.759 6 C -0.539 4.539 7 H 0.078 0.922 8 C 0.080 3.920 9 N -0.888 5.888 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.263 1.263 14 C 0.365 3.635 15 N -0.487 5.487 16 C 0.205 3.795 17 C -0.099 4.099 18 C -0.084 4.084 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.136 4.136 23 C 0.093 3.907 24 Cl -0.044 7.044 25 C -0.203 4.203 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -17.702 -8.054 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 N -0.019 5.019 4 N -0.150 5.150 5 C 0.123 3.877 6 C -0.577 4.577 7 H 0.096 0.904 8 C -0.124 4.124 9 N -0.525 5.525 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.116 3.884 15 N -0.203 5.203 16 C 0.070 3.930 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.106 4.106 20 C -0.167 4.167 21 C -0.100 4.100 22 C -0.141 4.141 23 C 0.054 3.946 24 Cl -0.015 7.015 25 C -0.213 4.213 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.206 -15.821 -7.934 19.509 hybrid contribution -0.206 -0.516 -0.425 0.700 sum -8.412 -16.338 -8.359 20.188 Atomic orbital electron populations 1.20308 0.85507 1.03984 1.03310 1.23395 0.96710 0.87591 1.02102 1.76519 0.87837 1.23101 1.14396 1.48837 1.03963 1.01208 1.61007 1.20055 0.79940 0.87827 0.99858 1.21146 1.16713 1.29570 0.90294 0.90406 1.24767 0.96260 0.95534 0.95832 1.69874 1.28353 1.35603 1.18662 0.86888 0.80003 0.80340 0.82809 1.19624 1.20466 1.18792 1.18952 0.88065 0.87140 0.94279 1.66927 1.32317 1.01637 1.19468 1.18620 0.91185 0.88336 0.94840 1.20772 0.98064 0.92064 1.00940 1.20775 0.96699 0.94723 0.98323 1.19526 0.92892 0.96172 1.02025 1.20767 1.02592 0.91120 1.02214 1.20750 0.99122 0.90826 0.99307 1.18328 0.92122 0.94342 1.09300 1.20719 0.85771 0.90723 0.97358 1.98347 1.20099 1.86944 1.96075 1.20364 0.95349 0.92748 1.12839 0.90118 0.90100 0.90042 0.92695 0.93519 0.92156 0.84190 0.85297 0.91275 0.91488 0.91613 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.01 36.00 0.36 -0.54 16 2 C 0.08 1.47 7.44 -80.16 -0.60 0.87 16 3 N -0.21 -4.39 12.37 34.86 0.43 -3.96 16 4 N -0.36 -8.51 3.63 -61.46 -0.22 -8.73 16 5 C 0.24 6.07 5.23 -5.19 -0.03 6.05 16 6 C -0.54 -15.68 9.94 -34.44 -0.34 -16.02 16 7 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 9 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 10 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 14 C 0.37 8.07 7.95 -156.09 -1.24 6.83 16 15 N -0.49 -10.46 10.33 -10.05 -0.10 -10.56 16 16 C 0.20 3.64 6.61 -84.77 -0.56 3.08 16 17 C -0.10 -1.43 9.97 -39.41 -0.39 -1.83 16 18 C -0.08 -0.95 9.58 -39.94 -0.38 -1.34 16 19 C -0.11 -1.15 5.85 -104.95 -0.61 -1.76 16 20 C -0.11 -0.82 9.98 36.01 0.36 -0.46 16 21 C -0.08 -1.01 9.06 -39.46 -0.36 -1.36 16 22 C -0.14 -2.14 5.74 -106.74 -0.61 -2.76 16 23 C 0.09 1.48 6.43 -38.44 -0.25 1.23 16 24 Cl -0.04 -0.52 25.41 -51.86 -1.32 -1.84 16 25 C -0.20 -3.80 6.21 -105.07 -0.65 -4.45 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.89 6.31 -51.93 -0.33 0.57 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.37 7.19 -51.93 -0.37 1.00 16 30 H 0.05 1.13 7.57 -51.93 -0.39 0.73 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.13 1.35 7.04 -52.48 -0.37 0.98 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -32.91 330.57 -9.54 -42.45 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.01 Total: -1.99 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -5.40 Total: -10.26 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.88 Total: -49.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.32 Total: -1.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.91 -9.54 -42.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255186979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.305 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds