Wall clock time and date at job start Fri Apr 10 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30064 * 126.15708 * 2 1 4 4 N 1.39765 * 110.33129 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.34742 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46727 * 90.02589 * 5 4 3 7 7 H 1.07996 * 120.00216 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99480 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99820 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00436 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46988 * 89.99692 * 10 8 6 12 12 H 1.48492 * 109.47137 * 210.00106 * 10 8 6 13 13 H 1.48502 * 109.47001 * 330.00233 * 10 8 6 14 14 C 1.37172 * 109.30187 * 0.02562 * 4 3 2 15 15 N 1.32071 * 132.89139 * 180.02562 * 14 4 3 16 16 C 1.33391 * 121.71106 * 179.97438 * 15 14 4 17 17 C 1.40857 * 120.57533 * 180.02562 * 16 15 14 18 18 C 1.35948 * 119.83370 * 179.97438 * 17 16 15 19 19 C 1.39489 * 121.15247 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.57092 * 180.02562 * 19 18 17 21 21 C 1.36013 * 120.85769 * 0.02562 * 19 18 17 22 22 C 1.40682 * 119.63531 * 0.02562 * 21 19 18 23 23 C 1.40370 * 121.05410 * 180.02562 * 22 21 19 24 24 Cl 1.73598 * 121.08737 * 359.97438 * 23 22 21 25 25 C 1.39150 * 117.82421 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47628 * 90.02528 * 1 2 3 27 27 H 1.09002 * 109.46861 * 210.02349 * 1 2 3 28 28 H 1.09001 * 109.47517 * 330.01872 * 1 2 3 29 29 H 1.08997 * 109.46741 * 210.02165 * 5 4 3 30 30 H 1.08992 * 109.47098 * 330.02740 * 5 4 3 31 31 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 32 32 H 1.08003 * 120.08830 * 359.96906 * 17 16 15 33 33 H 1.08000 * 119.42444 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.46946 * 269.97654 * 20 19 18 35 35 H 1.08992 * 109.46946 * 29.97523 * 20 19 18 36 36 H 1.08997 * 109.47285 * 149.98340 * 20 19 18 37 37 H 1.08006 * 120.18023 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0501 0.0000 4 7 3.6190 0.6690 0.0006 5 6 4.7604 1.5875 0.0002 6 6 5.1517 1.9029 1.4210 7 1 4.6053 1.4628 2.2420 8 6 6.2081 2.7525 1.6725 9 7 6.5500 3.0274 2.9124 10 14 7.1546 3.5120 0.2525 11 1 6.5281 4.8044 -0.1250 12 1 8.5620 3.7457 0.6645 13 1 7.1261 2.5896 -0.9110 14 6 3.7022 -0.7002 0.0004 15 7 4.7225 -1.5388 0.0012 16 6 4.5437 -2.8606 0.0013 17 6 5.6494 -3.7333 0.0027 18 6 5.4497 -5.0780 0.0033 19 6 4.1630 -5.6164 0.0030 20 6 3.9829 -7.1127 0.0043 21 6 3.0687 -4.8086 0.0017 22 6 3.2353 -3.4117 0.0000 23 6 2.1270 -2.5503 -0.0009 24 17 0.5069 -3.1741 -0.0005 25 6 2.3693 -1.1801 -0.0020 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5135 29 1 5.6013 1.1217 -0.5134 30 1 4.4854 2.5084 -0.5139 31 1 7.2929 3.6253 3.0894 32 1 6.6534 -3.3351 0.0032 33 1 6.3023 -5.7410 0.0039 34 1 3.9396 -7.4743 -1.0231 35 1 4.8229 -7.5793 0.5186 36 1 3.0557 -7.3666 0.5181 37 1 2.0774 -5.2373 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255186979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:23 Heat of formation + Delta-G solvation = 87.624551 kcal Electronic energy + Delta-G solvation = -23032.339259 eV Core-core repulsion = 19607.866430 eV Total energy + Delta-G solvation = -3424.472829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.74112 -40.72522 -38.13969 -37.49173 -36.00069 -34.54813 -33.72308 -32.56749 -31.11056 -30.81262 -28.59644 -27.28912 -25.54669 -24.45680 -23.07949 -23.07037 -20.80359 -19.71033 -19.30854 -18.73379 -17.70058 -16.84500 -16.45716 -16.39110 -15.90600 -15.53365 -15.20493 -15.03234 -14.88551 -14.66942 -14.38915 -14.17207 -13.99091 -13.95151 -13.63488 -13.37189 -13.11371 -12.96015 -12.69517 -12.63910 -12.34494 -12.28125 -12.13294 -11.94662 -11.88518 -11.68808 -11.16220 -10.94466 -10.59786 -10.13927 -9.68627 -8.62637 -8.45740 -6.56107 -1.10360 -0.24584 0.55739 0.62962 1.15881 1.29115 1.31999 1.38117 1.42534 1.79462 2.21851 2.84566 2.91834 3.00724 3.11200 3.27685 3.61116 3.67690 3.89496 4.01925 4.15081 4.18704 4.40977 4.46540 4.48956 4.63516 4.72631 4.74619 4.78233 4.97364 4.99504 5.00973 5.15664 5.18168 5.23350 5.32465 5.42842 5.57006 5.64729 5.88267 6.12730 6.42223 6.45467 6.88192 7.07114 8.71391 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.004737 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.232035 B = 5908.969625 C = 7560.278808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.105 3.895 3 N -0.254 5.254 4 N -0.394 5.394 5 C 0.257 3.743 6 C -0.550 4.550 7 H 0.019 0.981 8 C 0.022 3.978 9 N -0.937 5.937 10 Si 0.953 3.047 11 H -0.254 1.254 12 H -0.270 1.270 13 H -0.248 1.248 14 C 0.333 3.667 15 N -0.535 5.535 16 C 0.181 3.819 17 C -0.131 4.131 18 C -0.056 4.056 19 C -0.093 4.093 20 C -0.109 4.109 21 C -0.086 4.086 22 C -0.145 4.145 23 C 0.105 3.895 24 Cl 0.000 7.000 25 C -0.228 4.228 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.275 0.725 32 H 0.137 0.863 33 H 0.169 0.831 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -21.240 -9.882 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 N -0.066 5.066 4 N -0.185 5.185 5 C 0.137 3.863 6 C -0.588 4.588 7 H 0.037 0.963 8 C -0.178 4.178 9 N -0.576 5.576 10 Si 0.774 3.226 11 H -0.178 1.178 12 H -0.194 1.194 13 H -0.172 1.172 14 C 0.085 3.915 15 N -0.253 5.253 16 C 0.049 3.951 17 C -0.150 4.150 18 C -0.077 4.077 19 C -0.094 4.094 20 C -0.166 4.166 21 C -0.105 4.105 22 C -0.150 4.150 23 C 0.066 3.934 24 Cl 0.030 6.970 25 C -0.239 4.239 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.187 0.813 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.367 -19.411 -9.763 23.661 hybrid contribution 0.022 0.148 0.233 0.277 sum -9.345 -19.262 -9.530 23.435 Atomic orbital electron populations 1.20586 0.81555 1.05270 1.05520 1.24303 0.98625 0.86517 0.98162 1.76432 0.87258 1.24808 1.18099 1.48547 1.04305 1.01721 1.63945 1.19589 0.81161 0.88651 0.96887 1.21251 1.16779 1.29734 0.91053 0.96299 1.25827 0.97047 0.95679 0.99232 1.70031 1.29369 1.36691 1.21465 0.85651 0.78290 0.79841 0.78860 1.17848 1.19423 1.17179 1.19290 0.89982 0.86800 0.95405 1.66866 1.33323 1.03395 1.21727 1.19189 0.93365 0.87556 0.95020 1.20938 0.97272 0.93265 1.03523 1.21282 0.98554 0.93642 0.94188 1.20060 0.91997 0.98372 0.98921 1.20883 1.04115 0.87803 1.03778 1.21047 1.01066 0.89113 0.99241 1.18609 0.91243 0.96050 1.09087 1.20844 0.87981 0.89763 0.94853 1.98354 1.16807 1.86186 1.95634 1.20471 0.94164 0.94204 1.15016 0.87196 0.88424 0.89042 0.93084 0.92719 0.91629 0.84512 0.81337 0.89505 0.89742 0.90324 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.01 71.23 0.71 -0.94 16 2 C 0.10 3.83 7.44 44.88 0.33 4.16 16 3 N -0.25 -11.52 12.37 -43.62 -0.54 -12.06 16 4 N -0.39 -20.07 3.63 -348.35 -1.26 -21.34 16 5 C 0.26 13.80 5.23 85.63 0.45 14.25 16 6 C -0.55 -34.50 9.94 25.60 0.25 -34.24 16 7 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 8 C 0.02 1.31 5.47 84.65 0.46 1.77 16 9 N -0.94 -60.10 13.96 21.45 0.30 -59.81 16 10 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 11 H -0.25 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 14 C 0.33 15.81 7.95 134.41 1.07 16.88 16 15 N -0.54 -24.67 10.33 -185.70 -1.92 -26.59 16 16 C 0.18 6.65 6.61 40.47 0.27 6.92 16 17 C -0.13 -3.76 9.97 22.38 0.22 -3.54 16 18 C -0.06 -1.10 9.58 22.04 0.21 -0.89 16 19 C -0.09 -1.64 5.85 -20.08 -0.12 -1.76 16 20 C -0.11 -1.01 9.98 71.24 0.71 -0.30 16 21 C -0.09 -1.87 9.06 22.35 0.20 -1.66 16 22 C -0.15 -4.47 5.74 -21.24 -0.12 -4.60 16 23 C 0.10 3.26 6.43 23.01 0.15 3.40 16 24 Cl 0.00 0.01 25.41 -2.72 -0.07 -0.06 16 25 C -0.23 -8.86 6.21 -20.16 -0.13 -8.98 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 1.92 6.31 -2.39 -0.02 1.90 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.71 7.19 -2.39 -0.02 2.70 16 30 H 0.05 2.77 7.57 -2.39 -0.02 2.75 16 31 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 32 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 36 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 37 H 0.15 2.54 7.04 -2.91 -0.02 2.52 16 Total: -1.00 -81.20 330.57 4.13 -77.07 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.06 Total: 5.98 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.68 Total: -9.53 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -3.42 Total: -119.79 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -81.20 4.13 -77.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255186979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.697 kcal (2) G-P(sol) polarization free energy of solvation -81.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds