Wall clock time and date at job start Fri Apr 10 2020 18:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99810 * 2 1 4 4 O 1.21691 * 120.00438 * 5.09834 * 3 2 1 5 5 C 1.46678 * 119.99619 * 185.10306 * 3 2 1 6 6 C 1.37867 * 126.23402 * 5.00235 * 5 3 2 7 7 C 1.39846 * 107.08532 * 179.97438 * 6 5 3 8 8 S 1.76194 * 126.06576 * 180.02562 * 7 6 5 9 9 O 1.42103 * 106.39962 * 203.52029 * 8 7 6 10 10 O 1.42096 * 106.40457 * 336.43853 * 8 7 6 11 11 N 1.65595 * 107.21706 * 89.98214 * 8 7 6 12 12 C 1.46507 * 120.00529 * 64.99682 * 11 8 7 13 13 H 1.09000 * 109.46374 * 335.00272 * 12 11 8 14 14 C 1.53000 * 109.47030 * 94.99815 * 12 11 8 15 15 C 1.50696 * 109.47369 * 214.99991 * 12 11 8 16 16 H 1.08005 * 120.00087 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00207 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99561 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47152 * 90.00076 * 19 17 15 21 21 H 1.48502 * 109.46951 * 210.00269 * 19 17 15 22 22 H 1.48498 * 109.47337 * 330.00065 * 19 17 15 23 23 C 1.35448 * 107.86149 * 359.73979 * 7 6 5 24 24 N 1.35534 * 108.87570 * 0.42776 * 23 7 6 25 25 C 1.46499 * 125.68163 * 179.82849 * 24 23 7 26 26 H 1.09008 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46938 * 299.99634 * 1 2 3 28 28 H 1.08995 * 109.47396 * 60.00434 * 1 2 3 29 29 H 0.97000 * 119.99892 * 180.02562 * 2 1 3 30 30 H 1.07994 * 126.46398 * 0.02562 * 6 5 3 31 31 H 0.97003 * 119.99997 * 244.99476 * 11 8 7 32 32 H 1.08996 * 109.47025 * 180.02562 * 14 12 11 33 33 H 1.08999 * 109.47251 * 300.00470 * 14 12 11 34 34 H 1.09000 * 109.46918 * 60.00202 * 14 12 11 35 35 H 0.97001 * 119.99867 * 179.97438 * 18 17 15 36 36 H 1.08002 * 125.56812 * 180.25736 * 23 7 6 37 37 H 1.09001 * 109.47245 * 264.15953 * 25 24 23 38 38 H 1.09003 * 109.47156 * 144.15594 * 25 24 23 39 39 H 1.08998 * 109.46863 * 24.16624 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5341 2.2190 0.0936 5 6 3.6013 1.1697 -0.1130 6 6 4.4044 0.0686 -0.3216 7 6 5.7254 0.5257 -0.3638 8 16 7.1595 -0.4683 -0.6080 9 8 8.2477 0.2527 -0.0464 10 8 6.8088 -1.7848 -0.2046 11 7 7.4363 -0.5371 -2.2392 12 6 7.7915 0.6796 -2.9740 13 1 7.4095 1.5504 -2.4411 14 6 9.3139 0.7796 -3.0893 15 6 7.1856 0.6287 -4.3528 16 1 6.5945 -0.2244 -4.6518 17 6 7.3847 1.6717 -5.2323 18 7 8.1040 2.7107 -4.8680 19 14 6.6330 1.6089 -6.9412 20 1 5.2804 2.2209 -6.9098 21 1 7.4946 2.3605 -7.8889 22 1 6.5265 0.1953 -7.3836 23 6 5.7060 1.8688 -0.1900 24 7 4.4218 2.2719 -0.0306 25 6 3.9800 3.6516 0.1870 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.9500 -0.8401 -0.0004 30 1 4.0754 -0.9540 -0.4325 31 1 7.3633 -1.3830 -2.7083 32 1 9.5782 1.6850 -3.6356 33 1 9.7522 0.8164 -2.0920 34 1 9.6958 -0.0912 -3.6221 35 1 8.2445 3.4443 -5.4869 36 1 6.5726 2.5132 -0.1775 37 1 3.8549 3.8289 1.2552 38 1 3.0298 3.8133 -0.3220 39 1 4.7266 4.3391 -0.2106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263727013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:27 Heat of formation + Delta-G solvation = -64.721148 kcal Electronic energy + Delta-G solvation = -24805.505444 eV Core-core repulsion = 21069.161196 eV Total energy + Delta-G solvation = -3736.344248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43278 -39.11224 -36.54696 -35.37123 -35.16129 -34.91836 -32.91013 -32.16864 -30.02715 -28.22161 -26.78068 -26.65523 -25.20756 -22.64801 -21.31761 -20.90789 -19.99192 -18.81728 -18.13389 -17.21193 -16.29795 -16.07978 -15.82631 -15.71443 -15.21618 -15.19601 -14.81481 -14.52847 -14.06993 -13.60323 -13.45334 -13.07662 -12.65584 -12.60061 -12.52705 -12.39581 -12.36082 -12.14181 -11.65363 -11.50965 -11.37907 -11.14197 -10.99313 -10.76776 -10.56099 -10.27281 -10.15601 -10.09464 -9.40471 -9.19694 -9.07663 -8.61481 -8.35648 -8.26471 -6.14531 -4.21712 1.20547 1.41561 2.20875 2.53727 3.22916 3.24679 3.27837 3.30333 3.33000 3.94443 4.34532 4.47066 4.57308 4.72503 4.94499 5.01517 5.14930 5.17662 5.19289 5.26762 5.41989 5.51003 5.53935 5.56796 5.98780 6.14484 6.38736 6.54940 6.77481 6.86082 7.07243 7.08735 7.12123 7.26834 7.59543 7.72264 7.86923 8.00922 8.04986 8.29620 8.81867 9.44569 10.91099 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.005138 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.093231 B = 5448.190592 C = 6563.611503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.726 5.726 3 C 0.595 3.405 4 O -0.550 6.550 5 C -0.069 4.069 6 C -0.045 4.045 7 C -0.741 4.741 8 S 2.716 3.284 9 O -0.970 6.970 10 O -0.986 6.986 11 N -1.102 6.102 12 C 0.277 3.723 13 H 0.039 0.961 14 C -0.159 4.159 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.152 3.848 24 N -0.403 5.403 25 C 0.063 3.937 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.407 0.593 30 H 0.156 0.844 31 H 0.408 0.592 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.189 0.811 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 -2.687 9.289 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.378 5.378 3 C 0.384 3.616 4 O -0.429 6.429 5 C -0.181 4.181 6 C -0.071 4.071 7 C -0.833 4.833 8 S 2.804 3.196 9 O -0.961 6.961 10 O -0.977 6.977 11 N -0.862 5.862 12 C 0.172 3.828 13 H 0.057 0.943 14 C -0.218 4.218 15 C -0.562 4.562 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.009 3.991 24 N -0.074 5.074 25 C -0.078 4.078 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.241 0.759 30 H 0.173 0.827 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.206 0.794 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.378 -1.585 10.093 14.563 hybrid contribution -0.825 -0.173 -1.535 1.751 sum -11.203 -1.759 8.558 14.207 Atomic orbital electron populations 1.21552 0.78748 1.02485 1.02429 1.45421 1.07862 1.08366 1.76138 1.16910 0.84993 0.83966 0.75771 1.90773 1.70105 1.31119 1.50922 1.20008 0.91046 0.87495 1.19520 1.20892 0.90315 0.97372 0.98508 1.31204 1.17948 1.07373 1.26783 1.00955 0.73115 0.72573 0.72969 1.93545 1.50443 1.74674 1.77393 1.93493 1.85138 1.36959 1.82061 1.55551 1.85312 1.18551 1.26807 1.18464 0.92480 0.80018 0.91791 0.94318 1.22240 0.97671 1.02823 0.99081 1.21310 1.32223 1.04964 0.97671 0.91824 1.24897 0.95036 0.95279 0.98614 1.69874 1.38732 1.07928 1.36088 0.86512 0.78964 0.78230 0.83787 1.20776 1.21116 1.19792 1.21955 0.86753 0.94322 0.96119 1.44113 1.05793 1.07422 1.50043 1.22369 1.03410 0.78579 1.03432 0.90297 0.92088 0.92064 0.75857 0.82663 0.75822 0.89108 0.95506 0.94914 0.92663 0.79363 0.90330 0.87912 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.71 59.85 0.64 1.38 16 2 N -0.73 -7.57 5.69 -68.42 -0.39 -7.96 16 3 C 0.59 8.47 7.77 -12.86 -0.10 8.37 16 4 O -0.55 -9.00 14.78 5.20 0.08 -8.92 16 5 C -0.07 -1.06 6.89 -81.98 -0.56 -1.62 16 6 C -0.04 -0.68 10.14 -39.12 -0.40 -1.08 16 7 C -0.74 -12.61 6.00 -39.98 -0.24 -12.85 16 8 S 2.72 50.25 5.79 -107.50 -0.62 49.63 16 9 O -0.97 -20.12 17.11 -57.17 -0.98 -21.09 16 10 O -0.99 -19.09 17.87 -57.17 -1.02 -20.12 16 11 N -1.10 -21.71 5.46 -5.88 -0.03 -21.74 16 12 C 0.28 6.46 2.76 -69.08 -0.19 6.27 16 13 H 0.04 0.94 7.59 -51.93 -0.39 0.54 16 14 C -0.16 -3.73 9.29 37.16 0.35 -3.38 16 15 C -0.52 -13.24 8.76 -34.44 -0.30 -13.55 16 16 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -23.71 11.32 55.43 0.63 -23.09 16 19 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.15 2.43 10.85 -16.91 -0.18 2.25 16 24 N -0.40 -6.06 3.16 -120.24 -0.38 -6.44 16 25 C 0.06 0.75 10.49 59.85 0.63 1.37 16 26 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.41 3.31 7.77 -40.82 -0.32 2.99 16 30 H 0.16 1.90 7.49 -52.49 -0.39 1.51 16 31 H 0.41 7.33 8.83 -34.47 -0.30 7.03 16 32 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 33 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.32 6.54 -51.93 -0.34 0.98 16 39 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -33.91 345.94 -7.95 -41.86 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.96 Total: 8.64 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.46 Total: -11.26 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.17 Total: -59.22 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.92 Total: -50.13 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.62 Total: 49.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.91 -7.95 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263727013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.864 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds