Wall clock time and date at job start Fri Apr 10 2020 18:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99580 * 2 1 4 4 H 1.48500 * 109.47136 * 269.99680 * 3 2 1 5 5 H 1.48498 * 109.47414 * 30.00151 * 3 2 1 6 6 H 1.48497 * 109.46855 * 150.00042 * 3 2 1 7 7 C 1.37873 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47264 * 180.02562 * 9 7 2 11 11 N 1.46509 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.39666 * 120.00203 * 179.97438 * 11 10 9 13 13 C 1.38941 * 120.07416 * 354.13311 * 12 11 10 14 14 C 1.38082 * 119.92105 * 180.02562 * 13 12 11 15 15 C 1.38299 * 120.07913 * 359.97438 * 14 13 12 16 16 S 1.76199 * 119.92741 * 179.97438 * 15 14 13 17 17 N 1.65602 * 107.21713 * 90.00139 * 16 15 14 18 18 O 1.42102 * 106.40694 * 203.54154 * 16 15 14 19 19 O 1.42104 * 106.39948 * 336.46275 * 16 15 14 20 20 C 1.38265 * 120.14814 * 0.02562 * 15 14 13 21 21 C 1.38120 * 120.07857 * 359.72203 * 20 15 14 22 22 N 1.48006 * 120.04383 * 180.27460 * 21 20 15 23 23 O 1.21800 * 119.99704 * 142.57994 * 22 21 20 24 24 O 1.21792 * 119.99644 * 322.58533 * 22 21 20 25 25 H 0.97004 * 120.00413 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47013 * 60.00134 * 9 7 2 27 27 H 1.09004 * 109.47267 * 300.00468 * 9 7 2 28 28 H 1.08997 * 109.47405 * 299.99991 * 10 9 7 29 29 H 1.09000 * 109.47175 * 60.00598 * 10 9 7 30 30 H 0.96997 * 119.99643 * 0.02562 * 11 10 9 31 31 H 1.07993 * 120.03279 * 0.02562 * 13 12 11 32 32 H 1.08004 * 119.95923 * 180.02562 * 14 13 12 33 33 H 0.96993 * 120.00122 * 359.97438 * 17 16 15 34 34 H 0.97004 * 119.99932 * 180.02562 * 17 16 15 35 35 H 1.08008 * 119.95835 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.2113 -6.1403 -0.0018 13 6 3.5952 -6.1452 -0.1248 14 6 4.2824 -7.3428 -0.1256 15 6 3.5949 -8.5366 -0.0036 16 16 4.4758 -10.0626 -0.0058 17 7 4.8621 -10.4078 1.5671 18 8 3.5513 -11.0591 -0.4199 19 8 5.7044 -9.8157 -0.6759 20 6 2.2177 -8.5353 0.1189 21 6 1.5244 -7.3408 0.1257 22 7 0.0507 -7.3400 0.2630 23 8 -0.4995 -6.4721 0.9168 24 8 -0.6116 -8.2074 -0.2776 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6042 -0.8905 29 1 2.8720 -3.6042 0.8895 30 1 0.5429 -4.9308 -0.0019 31 1 4.1327 -5.2133 -0.2196 32 1 5.3583 -7.3473 -0.2207 33 1 4.5967 -9.8013 2.2760 34 1 5.3546 -11.2161 1.7793 35 1 1.6838 -9.4694 0.2144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273292371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:45 Heat of formation + Delta-G solvation = -58.660398 kcal Electronic energy + Delta-G solvation = -23525.480480 eV Core-core repulsion = 19653.565951 eV Total energy + Delta-G solvation = -3871.914528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24684 -39.85708 -37.42166 -36.85494 -36.18206 -36.07981 -33.54987 -33.44406 -32.26517 -31.16538 -28.93137 -26.50721 -25.24832 -23.09581 -22.79161 -21.13037 -20.18582 -19.41273 -18.72475 -18.02592 -17.84517 -17.55630 -17.38246 -16.50073 -16.22671 -15.98075 -15.40505 -14.86944 -14.77477 -14.51377 -14.21144 -13.62607 -13.46210 -12.58016 -12.46227 -12.43271 -12.36268 -12.18815 -11.70964 -11.57715 -11.53879 -11.29520 -11.11664 -11.04310 -10.99188 -10.84921 -10.80194 -10.30024 -9.90143 -9.88906 -9.52755 -8.62201 -8.17485 -6.25794 -4.32089 -0.02524 0.08230 0.49174 1.07182 1.37445 2.70003 2.93208 3.04608 3.17522 3.25166 3.27102 3.37731 4.00135 4.21691 4.25707 4.40919 4.60568 4.84505 5.06863 5.11080 5.19514 5.43270 5.52600 5.62131 5.67346 5.77262 5.99837 6.26124 6.31985 6.63957 6.71764 7.28297 7.29163 7.32813 7.62328 7.68632 8.02933 8.72738 9.34203 10.85387 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.003074 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.329214 B = 9107.204203 C =10293.333739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.107 3.893 11 N -0.690 5.690 12 C 0.326 3.674 13 C -0.210 4.210 14 C 0.060 3.940 15 C -0.748 4.748 16 S 2.714 3.286 17 N -1.252 6.252 18 O -0.964 6.964 19 O -0.962 6.962 20 C 0.094 3.906 21 C -0.149 4.149 22 N 0.037 4.963 23 O -0.170 6.170 24 O -0.152 6.152 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.415 0.585 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.417 0.583 34 H 0.420 0.580 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.828 -18.431 3.481 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.014 4.014 11 N -0.310 5.310 12 C 0.204 3.796 13 C -0.234 4.234 14 C 0.039 3.961 15 C -0.839 4.839 16 S 2.803 3.197 17 N -0.927 5.927 18 O -0.953 6.953 19 O -0.952 6.952 20 C 0.073 3.927 21 C -0.239 4.239 22 N 0.555 4.445 23 O -0.380 6.380 24 O -0.371 6.371 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.255 0.745 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.244 0.756 34 H 0.250 0.750 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.545 -18.433 2.499 21.382 hybrid contribution -0.705 1.576 0.720 1.870 sum 9.840 -16.857 3.219 19.782 Atomic orbital electron populations 1.69951 1.06162 1.27282 1.49128 1.25011 0.94917 0.99586 0.94634 0.86467 0.79726 0.82798 0.78284 1.20460 1.21000 1.19701 1.20909 0.93056 0.90029 1.52911 0.92151 1.19332 0.94070 0.90538 0.98602 1.22246 0.97081 0.81057 1.01064 1.46379 1.11011 1.03763 1.69802 1.17928 0.92274 0.84665 0.84743 1.20908 0.90595 1.00372 1.11538 1.20926 1.00668 0.89875 0.84647 1.30146 1.03995 1.20158 1.29578 1.01178 0.73605 0.72761 0.72205 1.53103 1.75580 1.36520 1.27462 1.93614 1.64539 1.56915 1.80249 1.93606 1.44204 1.85246 1.72120 1.20352 0.92347 0.96588 0.83406 1.20471 0.79699 0.95728 1.28004 1.43399 1.03108 0.99821 0.98175 1.94550 1.73568 1.31446 1.38420 1.94543 1.64253 1.31497 1.46802 0.92512 0.95707 0.95269 0.91529 0.91266 0.74508 0.82543 0.82642 0.75582 0.75016 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.53 -13.55 9.11 -34.44 -0.31 -13.86 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.01 0.28 5.09 -27.89 -0.14 0.13 16 10 C 0.11 1.85 4.90 -4.04 -0.02 1.83 16 11 N -0.69 -11.03 5.50 -58.63 -0.32 -11.35 16 12 C 0.33 4.52 6.61 -83.79 -0.55 3.97 16 13 C -0.21 -2.35 9.32 -39.38 -0.37 -2.72 16 14 C 0.06 0.55 9.51 -39.62 -0.38 0.18 16 15 C -0.75 -7.11 5.94 -39.55 -0.24 -7.34 16 16 S 2.71 23.01 6.28 -107.50 -0.68 22.33 16 17 N -1.25 -5.72 9.55 60.35 0.58 -5.14 16 18 O -0.96 -11.38 17.28 -57.17 -0.99 -12.36 16 19 O -0.96 -10.77 17.28 -57.17 -0.99 -11.76 16 20 C 0.09 1.06 9.13 -39.61 -0.36 0.70 16 21 C -0.15 -2.07 6.51 -79.75 -0.52 -2.59 16 22 N 0.04 0.59 4.28 34.06 0.15 0.74 16 23 O -0.17 -2.92 16.76 -29.46 -0.49 -3.42 16 24 O -0.15 -2.47 18.95 -29.46 -0.56 -3.02 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 29 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.41 7.09 6.09 -40.82 -0.25 6.85 16 31 H 0.16 1.56 6.73 -52.49 -0.35 1.20 16 32 H 0.16 1.04 7.61 -52.48 -0.40 0.64 16 33 H 0.42 1.10 8.92 -34.47 -0.31 0.79 16 34 H 0.42 1.22 8.96 -34.47 -0.31 0.91 16 35 H 0.16 1.60 7.56 -52.48 -0.40 1.21 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -33.55 325.67 -8.89 -42.44 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.22 Total: 3.97 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.99 Total: -18.16 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 1.14 Total: -40.11 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -3.03 Total: -30.56 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.68 Total: 22.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.55 -8.89 -42.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273292371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.217 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds