Wall clock time and date at job start Fri Apr 10 2020 18:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99580 * 2 1 4 4 H 1.48500 * 109.47136 * 269.99680 * 3 2 1 5 5 H 1.48498 * 109.47414 * 30.00151 * 3 2 1 6 6 H 1.48497 * 109.46855 * 150.00042 * 3 2 1 7 7 C 1.37873 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47264 * 180.02562 * 9 7 2 11 11 N 1.46509 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.39666 * 120.00203 * 179.97438 * 11 10 9 13 13 C 1.38941 * 120.07416 * 354.13311 * 12 11 10 14 14 C 1.38082 * 119.92105 * 180.02562 * 13 12 11 15 15 C 1.38299 * 120.07913 * 359.97438 * 14 13 12 16 16 S 1.76199 * 119.92741 * 179.97438 * 15 14 13 17 17 N 1.65602 * 107.21713 * 90.00139 * 16 15 14 18 18 O 1.42102 * 106.40694 * 203.54154 * 16 15 14 19 19 O 1.42104 * 106.39948 * 336.46275 * 16 15 14 20 20 C 1.38265 * 120.14814 * 0.02562 * 15 14 13 21 21 C 1.38120 * 120.07857 * 359.72203 * 20 15 14 22 22 N 1.48006 * 120.04383 * 180.27460 * 21 20 15 23 23 O 1.21800 * 119.99704 * 142.57994 * 22 21 20 24 24 O 1.21792 * 119.99644 * 322.58533 * 22 21 20 25 25 H 0.97004 * 120.00413 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47013 * 60.00134 * 9 7 2 27 27 H 1.09004 * 109.47267 * 300.00468 * 9 7 2 28 28 H 1.08997 * 109.47405 * 299.99991 * 10 9 7 29 29 H 1.09000 * 109.47175 * 60.00598 * 10 9 7 30 30 H 0.96997 * 119.99643 * 0.02562 * 11 10 9 31 31 H 1.07993 * 120.03279 * 0.02562 * 13 12 11 32 32 H 1.08004 * 119.95923 * 180.02562 * 14 13 12 33 33 H 0.96993 * 120.00122 * 359.97438 * 17 16 15 34 34 H 0.97004 * 119.99932 * 180.02562 * 17 16 15 35 35 H 1.08008 * 119.95835 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.2113 -6.1403 -0.0018 13 6 3.5952 -6.1452 -0.1248 14 6 4.2824 -7.3428 -0.1256 15 6 3.5949 -8.5366 -0.0036 16 16 4.4758 -10.0626 -0.0058 17 7 4.8621 -10.4078 1.5671 18 8 3.5513 -11.0591 -0.4199 19 8 5.7044 -9.8157 -0.6759 20 6 2.2177 -8.5353 0.1189 21 6 1.5244 -7.3408 0.1257 22 7 0.0507 -7.3400 0.2630 23 8 -0.4995 -6.4721 0.9168 24 8 -0.6116 -8.2074 -0.2776 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6042 -0.8905 29 1 2.8720 -3.6042 0.8895 30 1 0.5429 -4.9308 -0.0019 31 1 4.1327 -5.2133 -0.2196 32 1 5.3583 -7.3473 -0.2207 33 1 4.5967 -9.8013 2.2760 34 1 5.3546 -11.2161 1.7793 35 1 1.6838 -9.4694 0.2144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273292371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:44 Heat of formation + Delta-G solvation = -84.795466 kcal Electronic energy + Delta-G solvation = -23526.613781 eV Core-core repulsion = 19653.565951 eV Total energy + Delta-G solvation = -3873.047830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.43302 -40.87829 -38.24455 -38.05873 -37.42760 -36.92053 -35.25461 -34.00896 -33.32729 -32.54042 -30.30030 -27.66480 -26.81861 -24.40241 -23.84721 -22.57542 -21.13098 -20.19795 -19.93575 -19.18041 -18.81689 -18.47803 -18.26538 -18.05495 -17.27068 -16.72619 -16.51038 -16.32418 -16.18797 -15.53982 -15.38889 -14.69842 -14.51388 -14.20805 -13.55368 -13.30570 -13.20961 -13.18468 -13.14582 -13.04198 -12.86302 -12.64404 -12.52527 -12.41673 -12.33070 -12.13647 -11.68956 -11.66410 -11.44312 -11.31463 -10.83212 -10.63313 -9.28764 -8.27485 -6.40292 -1.15425 -0.67192 -0.41390 -0.00715 0.26048 1.41805 1.42398 1.53379 1.85262 1.86920 2.22550 2.39475 2.69513 3.04935 3.08408 3.34146 3.56541 3.68177 3.91353 4.15643 4.19153 4.33017 4.36425 4.63588 4.67224 4.72983 5.01689 5.15812 5.31758 5.33437 5.44121 5.58415 5.76962 5.95872 6.11965 6.33019 6.37386 6.75844 7.30868 8.84869 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.003074 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.329214 B = 9107.204203 C =10293.333739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.015 3.985 10 C 0.129 3.871 11 N -0.709 5.709 12 C 0.310 3.690 13 C -0.210 4.210 14 C 0.075 3.925 15 C -0.731 4.731 16 S 2.745 3.255 17 N -1.235 6.235 18 O -0.995 6.995 19 O -0.983 6.983 20 C 0.091 3.909 21 C -0.161 4.161 22 N 0.040 4.960 23 O -0.210 6.210 24 O -0.153 6.153 25 H 0.265 0.735 26 H -0.005 1.005 27 H -0.001 1.001 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.405 0.595 31 H 0.174 0.826 32 H 0.192 0.808 33 H 0.429 0.571 34 H 0.431 0.569 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.259 -19.446 3.740 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.022 4.022 10 C 0.007 3.993 11 N -0.329 5.329 12 C 0.192 3.808 13 C -0.233 4.233 14 C 0.054 3.946 15 C -0.820 4.820 16 S 2.832 3.168 17 N -0.916 5.916 18 O -0.984 6.984 19 O -0.972 6.972 20 C 0.070 3.930 21 C -0.251 4.251 22 N 0.553 4.447 23 O -0.412 6.412 24 O -0.375 6.375 25 H 0.073 0.927 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.243 0.757 31 H 0.191 0.809 32 H 0.209 0.791 33 H 0.259 0.741 34 H 0.264 0.736 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.992 -19.442 2.803 24.117 hybrid contribution -1.666 1.665 0.630 2.438 sum 12.326 -17.778 3.433 21.903 Atomic orbital electron populations 1.70104 1.08056 1.28084 1.50938 1.26001 0.95687 1.03670 0.94424 0.85364 0.78757 0.77997 0.78439 1.19923 1.21337 1.17986 1.21446 0.94052 0.90968 1.51468 0.90529 1.19153 0.94584 0.92749 0.95733 1.21814 0.95321 0.79797 1.02396 1.46117 1.10443 1.04080 1.72308 1.18194 0.93284 0.83646 0.85687 1.21193 0.89263 1.01952 1.10932 1.21375 1.02292 0.88753 0.82144 1.30409 1.03161 1.21067 1.27367 1.00207 0.72488 0.71550 0.72605 1.52683 1.75387 1.37315 1.26171 1.93587 1.65505 1.57821 1.81504 1.93589 1.44836 1.85290 1.73500 1.20572 0.93132 0.96092 0.83182 1.20681 0.78136 0.96845 1.29482 1.43719 1.04151 0.99269 0.97572 1.94552 1.74491 1.32267 1.39893 1.94506 1.65181 1.31376 1.46426 0.92661 0.98650 0.98267 0.90063 0.89898 0.75682 0.80915 0.79134 0.74064 0.73567 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 41.34 29.54 68.60 2.03 43.36 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.54 -27.75 9.11 25.60 0.23 -27.52 16 8 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 0.73 5.09 29.84 0.15 0.88 16 10 C 0.13 4.42 4.90 86.38 0.42 4.84 16 11 N -0.71 -23.04 5.50 -339.41 -1.87 -24.91 16 12 C 0.31 8.33 6.61 38.22 0.25 8.58 16 13 C -0.21 -4.09 9.32 22.40 0.21 -3.88 16 14 C 0.07 1.09 9.51 22.25 0.21 1.30 16 15 C -0.73 -11.61 5.94 22.29 0.13 -11.48 16 16 S 2.74 37.90 6.28 -56.49 -0.35 37.54 16 17 N -1.23 -6.84 9.55 37.02 0.35 -6.49 16 18 O -0.99 -21.15 17.28 -128.00 -2.21 -23.37 16 19 O -0.98 -18.55 17.28 -128.00 -2.21 -20.76 16 20 C 0.09 1.89 9.13 22.25 0.20 2.09 16 21 C -0.16 -4.39 6.51 36.51 0.24 -4.15 16 22 N 0.04 1.30 4.28 -46.16 -0.20 1.10 16 23 O -0.21 -7.67 16.76 18.89 0.32 -7.35 16 24 O -0.15 -5.06 18.95 18.90 0.36 -4.70 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 28 H 0.08 2.52 7.72 -2.39 -0.02 2.50 16 29 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 30 H 0.41 14.74 6.09 -92.71 -0.57 14.18 16 31 H 0.17 2.82 6.73 -2.91 -0.02 2.80 16 32 H 0.19 1.53 7.61 -2.91 -0.02 1.51 16 33 H 0.43 0.61 8.92 -96.75 -0.86 -0.25 16 34 H 0.43 0.98 8.96 -96.74 -0.87 0.11 16 35 H 0.17 3.16 7.56 -2.91 -0.02 3.13 16 Total: -1.00 -74.54 325.67 -2.10 -76.63 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -1.11 Total: 11.95 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 2.52 Total: -28.83 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.43 Total: -84.48 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -3.75 Total: -56.18 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 37.90 SS G_CDS: -0.35 Total: 37.54 kcal Total: -74.54 -2.10 -76.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273292371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.164 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds