Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35755 * 117.00621 * 2 1 4 4 C 1.38943 * 119.91306 * 359.97438 * 3 2 1 5 5 C 1.37725 * 120.11886 * 179.97438 * 4 3 2 6 6 C 1.39750 * 119.95174 * 0.02562 * 5 4 3 7 7 C 1.47548 * 120.08726 * 180.02562 * 6 5 4 8 8 O 1.21592 * 119.99801 * 359.72588 * 7 6 5 9 9 N 1.34775 * 120.00459 * 180.02562 * 7 6 5 10 10 C 1.39129 * 120.00038 * 175.70578 * 9 7 6 11 11 C 1.39510 * 119.83191 * 215.01921 * 10 9 7 12 12 C 1.36364 * 120.16342 * 179.71804 * 11 10 9 13 13 C 1.40882 * 119.83006 * 0.56209 * 12 11 10 14 14 C 1.41134 * 120.16174 * 179.69952 * 13 12 11 15 15 H 1.08001 * 119.99541 * 214.79078 * 14 13 12 16 16 C 1.39905 * 120.00069 * 34.79120 * 14 13 12 17 17 N 1.30869 * 120.00195 * 355.58418 * 16 14 13 18 18 Si 1.86805 * 119.99899 * 175.58196 * 16 14 13 19 19 H 1.48504 * 109.46926 * 89.99759 * 18 16 14 20 20 H 1.48496 * 109.47197 * 210.00277 * 18 16 14 21 21 H 1.48506 * 109.47037 * 330.00051 * 18 16 14 22 22 C 1.40881 * 119.67767 * 359.71199 * 13 12 11 23 23 C 1.36359 * 119.82993 * 0.02562 * 22 13 12 24 24 C 1.39765 * 119.83199 * 0.27820 * 6 5 4 25 25 C 1.37894 * 119.87658 * 359.42150 * 24 6 5 26 26 F 1.35103 * 119.97210 * 180.27676 * 25 24 6 27 27 H 1.09001 * 109.47024 * 300.00230 * 1 2 3 28 28 H 1.09005 * 109.47088 * 59.99972 * 1 2 3 29 29 H 1.09003 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.94059 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.02599 * 179.97438 * 5 4 3 32 32 H 0.96996 * 119.99544 * 355.70745 * 9 7 6 33 33 H 1.07996 * 119.92029 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.08725 * 180.27929 * 12 11 10 35 35 H 0.96997 * 120.00044 * 180.02562 * 17 16 14 36 36 H 1.07992 * 120.08542 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.92276 * 179.97438 * 23 22 13 38 38 H 1.07998 * 120.06312 * 179.72263 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.2870 2.3737 -0.0005 5 6 1.9080 3.6030 0.0000 6 6 3.3034 3.6799 0.0005 7 6 3.9717 4.9953 0.0017 8 8 3.3083 6.0143 -0.0029 9 7 5.3176 5.0674 0.0017 10 6 5.9479 6.3045 -0.0875 11 6 7.1486 6.4227 -0.7879 12 6 7.7693 7.6331 -0.8844 13 6 7.2010 8.7635 -0.2646 14 6 7.8406 10.0183 -0.3546 15 1 7.7977 10.7071 0.4761 16 6 8.5303 10.3699 -1.5200 17 7 8.6561 9.5033 -2.4926 18 14 9.2715 12.0763 -1.6878 19 1 10.6616 12.0657 -1.1655 20 1 9.2834 12.4723 -3.1190 21 1 8.4587 13.0475 -0.9123 22 6 5.9912 8.6351 0.4458 23 6 5.3793 7.4193 0.5292 24 6 4.0642 2.5075 -0.0054 25 6 3.4353 1.2804 0.0004 26 9 4.1689 0.1459 0.0004 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2086 2.3146 -0.0005 31 1 1.3170 4.5070 -0.0008 32 1 5.8466 4.2568 0.0638 33 1 7.5856 5.5544 -1.2583 34 1 8.6964 7.7241 -1.4307 35 1 9.1345 9.7469 -3.3004 36 1 5.5499 9.4971 0.9238 37 1 4.4520 7.3191 1.0738 38 1 5.1428 2.5625 -0.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -63.928419 kcal Electronic energy + Delta-G solvation = -24334.172688 eV Core-core repulsion = 20442.498902 eV Total energy + Delta-G solvation = -3891.673785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.00577 -40.58159 -39.64922 -37.75815 -36.85090 -34.55061 -33.04014 -31.12334 -30.75051 -29.58595 -28.78761 -27.81300 -25.26147 -23.54653 -22.96431 -21.59128 -20.85783 -19.86379 -18.83784 -17.78442 -17.32052 -17.22316 -16.51587 -16.38360 -15.97330 -15.36720 -15.17473 -15.08906 -14.66933 -14.64277 -14.25739 -13.90788 -13.31002 -13.06863 -12.76999 -12.58585 -12.56676 -12.29961 -12.13437 -11.73956 -11.53724 -11.46976 -11.37130 -11.15975 -11.00137 -10.74241 -10.08631 -9.54241 -9.48552 -9.32192 -9.20468 -8.92087 -8.52856 -7.56825 -6.88760 -6.63612 -4.35887 0.55581 0.82946 2.52496 2.69911 2.89025 3.07313 3.09207 3.12309 3.19905 3.54203 3.76558 3.87706 3.97030 4.31033 4.48389 4.67825 4.72505 4.75158 4.83613 4.93142 5.06935 5.09656 5.49716 5.63005 5.64915 5.81197 6.02398 6.17649 6.20241 6.42486 6.70973 6.84364 6.89716 7.04805 7.17757 7.27393 7.61946 7.70761 7.83431 8.04311 8.21139 8.29416 8.58654 8.67790 8.90874 8.97529 10.27283 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.002380 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.195084 B =11762.305739 C =12197.952922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.113 3.887 4 C -0.190 4.190 5 C -0.029 4.029 6 C -0.131 4.131 7 C 0.544 3.456 8 O -0.525 6.525 9 N -0.642 5.642 10 C 0.000 4.000 11 C -0.118 4.118 12 C -0.142 4.142 13 C 0.101 3.899 14 C -0.459 4.459 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.810 5.810 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.206 4.206 23 C -0.083 4.083 24 C -0.086 4.086 25 C 0.063 3.937 26 F -0.130 7.130 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.395 0.605 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.278 0.722 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 -16.331 3.140 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.066 3.934 4 C -0.209 4.209 5 C -0.049 4.049 6 C -0.135 4.135 7 C 0.332 3.668 8 O -0.403 6.403 9 N -0.285 5.285 10 C -0.092 4.092 11 C -0.139 4.139 12 C -0.162 4.162 13 C 0.098 3.902 14 C -0.490 4.490 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.438 5.438 18 Si 0.741 3.259 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.103 4.103 24 C -0.106 4.106 25 C 0.043 3.957 26 F -0.109 7.109 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.229 0.771 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.930 -15.867 2.883 20.060 hybrid contribution 0.453 0.168 -0.298 0.568 sum -11.477 -15.699 2.585 19.618 Atomic orbital electron populations 1.23179 0.77573 1.04473 1.01840 1.86096 1.22048 1.25798 1.88103 1.19230 0.90817 0.85710 0.97605 1.21125 1.00573 0.91013 1.08195 1.21164 0.93231 0.97957 0.92502 1.19873 0.94184 0.92822 1.06626 1.17960 0.82550 0.88085 0.78251 1.90777 1.64446 1.35564 1.49554 1.42885 1.05590 1.08812 1.71189 1.17240 0.97996 0.84647 1.09327 1.20322 0.95802 0.97905 0.99836 1.21198 1.01327 0.90293 1.03348 1.17744 0.89765 0.93000 0.89683 1.19506 1.28167 1.00857 1.00455 0.90555 1.25895 0.94106 0.99240 0.95385 1.69757 1.33386 1.34971 1.05640 0.86187 0.79675 0.81922 0.78140 1.19511 1.20294 1.18706 1.20807 0.97219 0.95963 1.08602 1.20399 0.98968 0.92335 0.98591 1.21201 1.01056 0.89744 0.98560 1.16713 0.85936 0.82819 1.10196 1.91520 1.76500 1.48461 1.94392 0.92131 0.92126 0.87792 0.83809 0.83424 0.77058 0.89006 0.84970 0.91095 0.88511 0.87406 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.06 10.35 -18.97 -0.20 -3.26 16 3 C 0.11 1.22 6.70 -38.97 -0.26 0.96 16 4 C -0.19 -1.80 9.01 -39.51 -0.36 -2.16 16 5 C -0.03 -0.34 9.58 -39.20 -0.38 -0.72 16 6 C -0.13 -1.77 5.87 -104.97 -0.62 -2.38 16 7 C 0.54 9.52 7.59 -12.46 -0.09 9.42 16 8 O -0.53 -11.09 13.76 5.28 0.07 -11.02 16 9 N -0.64 -11.26 5.25 -10.68 -0.06 -11.31 16 10 C 0.00 0.00 6.30 -83.60 -0.53 -0.52 16 11 C -0.12 -2.68 9.90 -39.78 -0.39 -3.07 16 12 C -0.14 -3.62 8.61 -39.26 -0.34 -3.95 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.17 9.02 -37.86 -0.34 -12.51 16 15 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 16 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 17 N -0.81 -20.98 10.60 55.55 0.59 -20.39 16 18 Si 0.92 18.91 29.56 -169.99 -5.03 13.88 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.21 -5.18 9.74 -39.26 -0.38 -5.56 16 23 C -0.08 -1.97 8.61 -39.78 -0.34 -2.31 16 24 C -0.09 -1.00 9.51 -39.14 -0.37 -1.37 16 25 C 0.06 0.75 7.30 -39.36 -0.29 0.46 16 26 F -0.13 -1.64 17.10 2.25 0.04 -1.60 16 27 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 28 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 31 H 0.15 1.68 7.64 -52.48 -0.40 1.28 16 32 H 0.39 5.43 6.85 -40.82 -0.28 5.15 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.11 2.51 6.23 -52.49 -0.33 2.18 16 38 H 0.15 1.42 6.41 -52.49 -0.34 1.09 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -31.13 331.70 -7.57 -38.69 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.60 Total: 8.87 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -4.38 Total: -18.86 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.53 Total: -31.70 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.12 Total: -14.27 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.13 -7.57 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.235 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds