Wall clock time and date at job start Fri Apr 10 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34753 * 117.00125 * 2 1 4 4 O 1.21524 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.47392 * 120.00359 * 179.97438 * 3 2 1 6 6 C 1.40991 * 119.88907 * 0.02562 * 5 3 2 7 7 C 1.38875 * 118.70766 * 180.02562 * 6 5 3 8 8 C 1.43198 * 120.73927 * 179.97438 * 7 6 5 9 9 N 6.01576 * 161.48593 * 179.97438 * 2 1 3 10 10 C 1.46518 * 118.52244 * 359.97438 * 7 6 5 11 11 O 1.21820 * 120.16164 * 179.97438 * 10 7 6 12 12 N 1.34642 * 119.67957 * 0.02562 * 10 7 6 13 13 C 1.46494 * 119.35425 * 179.97438 * 12 10 7 14 14 C 1.53002 * 109.47305 * 89.99589 * 13 12 10 15 15 H 1.09000 * 109.46986 * 55.00346 * 14 13 12 16 16 C 1.47206 * 109.47021 * 295.00530 * 14 13 12 17 17 N 7.65809 * 149.66214 * 317.63521 * 2 1 3 18 18 C 1.52997 * 109.47415 * 175.00464 * 14 13 12 19 19 C 1.50702 * 109.47345 * 185.00243 * 18 14 13 20 20 H 1.08004 * 119.99515 * 359.97438 * 19 18 14 21 21 C 1.37877 * 119.99986 * 179.97438 * 19 18 14 22 22 N 1.31514 * 119.99756 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47346 * 89.99736 * 23 21 19 25 25 H 1.48497 * 109.47171 * 210.00102 * 23 21 19 26 26 H 1.48506 * 109.46836 * 329.99781 * 23 21 19 27 27 C 1.34299 * 121.30182 * 0.27193 * 12 10 7 28 28 H 1.08994 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46854 * 300.00131 * 1 2 3 30 30 H 1.09005 * 109.46505 * 60.00038 * 1 2 3 31 31 H 1.08001 * 120.64813 * 359.97438 * 6 5 3 32 32 H 1.09006 * 109.46799 * 330.00374 * 13 12 10 33 33 H 1.09000 * 109.47509 * 209.99861 * 13 12 10 34 34 H 1.09001 * 109.46992 * 305.00579 * 18 14 13 35 35 H 1.08998 * 109.47097 * 64.99767 * 18 14 13 36 36 H 0.97001 * 119.99810 * 180.02562 * 22 21 19 37 37 H 1.07999 * 119.21323 * 179.70386 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3014 0.0939 0.0006 7 6 5.6864 0.1953 0.0017 8 6 6.5062 -0.9789 0.0023 9 7 7.1565 -1.9102 0.0009 10 6 6.2903 1.5302 0.0022 11 8 7.5022 1.6538 0.0036 12 7 5.4992 2.6198 0.0021 13 6 6.1105 3.9510 0.0032 14 6 6.3245 4.4152 -1.4389 15 1 5.3786 4.3719 -1.9787 16 6 7.3055 3.5367 -2.0967 17 7 8.0615 2.8580 -2.6065 18 6 6.8467 5.8533 -1.4397 19 6 6.9409 6.3528 -2.8584 20 1 6.6571 5.7087 -3.6776 21 6 7.3893 7.6320 -3.1105 22 7 7.4711 8.0681 -4.3486 23 14 7.8808 8.7458 -1.6936 24 1 9.3249 8.5643 -1.3992 25 1 7.6252 10.1607 -2.0646 26 1 7.0828 8.3976 -0.4906 27 6 4.1607 2.5102 0.0071 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8901 31 1 3.8201 -0.8729 0.0006 32 1 7.0706 3.9095 0.5177 33 1 5.4530 4.6524 0.5169 34 1 6.1635 6.4882 -0.8755 35 1 7.8337 5.8817 -0.9781 36 1 7.7869 8.9679 -4.5260 37 1 3.5585 3.4067 0.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025248114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:44 Heat of formation + Delta-G solvation = -28.980773 kcal Electronic energy + Delta-G solvation = -24971.362068 eV Core-core repulsion = 21101.123688 eV Total energy + Delta-G solvation = -3870.238380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99648 -40.54368 -37.62000 -37.32031 -36.69184 -36.43722 -34.88869 -33.69644 -32.02352 -30.95657 -28.55623 -27.84234 -25.56668 -24.95112 -23.69474 -21.90032 -21.72848 -19.76804 -18.23132 -17.73434 -17.46657 -17.19266 -16.93503 -16.74398 -16.53462 -16.27465 -15.74529 -14.45168 -14.43813 -14.04735 -13.86116 -13.72567 -13.63645 -13.47402 -13.34162 -12.95321 -12.71455 -12.70015 -12.55695 -12.46737 -12.34929 -12.12667 -11.59592 -11.47868 -11.16406 -11.12692 -11.00945 -10.79890 -10.58087 -10.36248 -10.15354 -9.96061 -9.50458 -8.73206 -8.50178 -6.21744 -4.24656 -0.05659 0.71997 1.71457 2.17652 2.28392 2.69171 2.77089 3.18810 3.24055 3.27996 3.42047 3.49317 3.52652 3.61933 3.99741 4.14597 4.20972 4.27374 4.36425 4.40858 4.76756 4.82116 4.85800 4.89463 5.09938 5.12022 5.18893 5.24823 5.34132 5.34543 5.64661 5.84950 5.94859 5.96504 6.36717 6.68282 6.86652 7.34615 7.39188 7.46017 7.48339 8.25160 8.31400 8.80153 9.36290 10.90999 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003779 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.786553 B = 7407.532091 C = 8845.731885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.531 3.469 4 O -0.509 6.509 5 C -0.258 4.258 6 C 0.083 3.917 7 C -0.163 4.163 8 C 0.279 3.721 9 N -0.414 5.414 10 C 0.534 3.466 11 O -0.485 6.485 12 N -0.481 5.481 13 C 0.082 3.918 14 C 0.006 3.994 15 H 0.115 0.885 16 C 0.218 3.782 17 N -0.432 5.432 18 C -0.002 4.002 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.892 5.892 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.262 1.262 27 C 0.264 3.736 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 -11.549 13.857 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.377 3.623 4 O -0.399 6.399 5 C -0.265 4.265 6 C 0.059 3.941 7 C -0.171 4.171 8 C -0.036 4.036 9 N -0.090 5.090 10 C 0.330 3.670 11 O -0.359 6.359 12 N -0.185 5.185 13 C -0.038 4.038 14 C -0.016 4.016 15 H 0.133 0.867 16 C -0.100 4.100 17 N -0.107 5.107 18 C -0.041 4.041 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.129 4.129 22 N -0.530 5.530 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.186 1.186 27 C 0.126 3.874 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.965 -13.451 12.963 23.323 hybrid contribution -0.444 1.443 0.617 1.632 sum -14.409 -12.007 13.580 23.157 Atomic orbital electron populations 1.23316 0.75372 1.03902 1.02909 1.86507 1.23930 1.32243 1.84501 1.20234 0.87698 0.81726 0.72681 1.90898 1.66475 1.35720 1.46772 1.18061 0.90677 0.92561 1.25212 1.21897 0.90802 0.99105 0.82307 1.17445 0.91172 0.87782 1.20699 1.24534 0.93291 0.92186 0.93541 1.81223 1.06819 1.11268 1.09658 1.17994 0.87032 0.83598 0.78385 1.91046 1.12274 1.85480 1.47150 1.45516 1.05994 1.10799 1.56167 1.22757 1.02608 0.79048 0.99413 1.19351 0.96084 0.95262 0.90900 0.86726 1.28643 0.94451 0.92885 0.93992 1.81092 1.09599 1.11145 1.08880 1.19644 0.97114 0.87277 1.00046 1.20912 1.46017 0.99601 0.90557 0.90700 1.24977 0.94557 0.97839 0.95557 1.69893 1.45967 1.18146 1.18951 0.86821 0.79570 0.80217 0.82930 1.20160 1.21130 1.18647 1.22560 0.83724 1.00012 0.81098 0.87925 0.91623 0.91530 0.82330 0.86304 0.85589 0.93878 0.95524 0.92364 0.78909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.57 101.05 1.07 1.25 16 2 O -0.36 -2.48 9.83 -40.64 -0.40 -2.88 16 3 C 0.53 4.28 7.88 34.46 0.27 4.55 16 4 O -0.51 -5.16 16.06 -19.29 -0.31 -5.47 16 5 C -0.26 -1.89 5.86 -105.15 -0.62 -2.51 16 6 C 0.08 0.64 9.43 -38.30 -0.36 0.28 16 7 C -0.16 -1.83 5.93 -104.40 -0.62 -2.45 16 8 C 0.28 3.89 15.06 -22.48 -0.34 3.56 16 9 N -0.41 -6.63 18.54 41.83 0.78 -5.85 16 10 C 0.53 6.99 6.91 -12.98 -0.09 6.90 16 11 O -0.49 -8.46 14.57 5.08 0.07 -8.39 16 12 N -0.48 -4.66 2.47 -117.35 -0.29 -4.95 16 13 C 0.08 0.82 4.89 -4.04 -0.02 0.80 16 14 C 0.01 0.09 2.42 -93.40 -0.23 -0.13 16 15 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.22 4.26 11.74 -20.74 -0.24 4.02 16 17 N -0.43 -9.74 18.27 42.18 0.77 -8.97 16 18 C 0.00 -0.04 3.49 -27.88 -0.10 -0.13 16 19 C -0.53 -13.36 9.15 -34.44 -0.32 -13.67 16 20 H 0.07 2.09 7.84 -52.48 -0.41 1.68 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 22 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 23 Si 0.88 19.36 27.47 -169.99 -4.67 14.69 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.26 -5.14 6.54 56.52 0.37 -4.77 16 27 C 0.26 1.82 9.79 -16.49 -0.16 1.66 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.16 0.86 7.65 -52.49 -0.40 0.46 16 32 H 0.12 1.30 7.37 -51.93 -0.38 0.92 16 33 H 0.13 0.68 7.97 -51.93 -0.41 0.27 16 34 H 0.04 0.71 7.20 -51.93 -0.37 0.33 16 35 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.19 0.81 7.47 -52.49 -0.39 0.42 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -36.97 344.42 -3.55 -40.52 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -3.63 Total: -4.78 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.85 Total: 5.99 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 2.03 Total: -44.88 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.63 Total: -16.74 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.97 -3.55 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025248114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.543 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds