Wall clock time and date at job start Fri Apr 10 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34753 * 117.00125 * 2 1 4 4 O 1.21524 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.47392 * 120.00359 * 179.97438 * 3 2 1 6 6 C 1.40991 * 119.88907 * 0.02562 * 5 3 2 7 7 C 1.38875 * 118.70766 * 180.02562 * 6 5 3 8 8 C 1.43198 * 120.73927 * 179.97438 * 7 6 5 9 9 N 6.01576 * 161.48593 * 179.97438 * 2 1 3 10 10 C 1.46518 * 118.52244 * 359.97438 * 7 6 5 11 11 O 1.21820 * 120.16164 * 179.97438 * 10 7 6 12 12 N 1.34642 * 119.67957 * 0.02562 * 10 7 6 13 13 C 1.46494 * 119.35425 * 179.97438 * 12 10 7 14 14 C 1.53002 * 109.47305 * 89.99589 * 13 12 10 15 15 H 1.09000 * 109.46986 * 55.00346 * 14 13 12 16 16 C 1.47206 * 109.47021 * 295.00530 * 14 13 12 17 17 N 7.65809 * 149.66214 * 317.63521 * 2 1 3 18 18 C 1.52997 * 109.47415 * 175.00464 * 14 13 12 19 19 C 1.50702 * 109.47345 * 185.00243 * 18 14 13 20 20 H 1.08004 * 119.99515 * 359.97438 * 19 18 14 21 21 C 1.37877 * 119.99986 * 179.97438 * 19 18 14 22 22 N 1.31514 * 119.99756 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47346 * 89.99736 * 23 21 19 25 25 H 1.48497 * 109.47171 * 210.00102 * 23 21 19 26 26 H 1.48506 * 109.46836 * 329.99781 * 23 21 19 27 27 C 1.34299 * 121.30182 * 0.27193 * 12 10 7 28 28 H 1.08994 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46854 * 300.00131 * 1 2 3 30 30 H 1.09005 * 109.46505 * 60.00038 * 1 2 3 31 31 H 1.08001 * 120.64813 * 359.97438 * 6 5 3 32 32 H 1.09006 * 109.46799 * 330.00374 * 13 12 10 33 33 H 1.09000 * 109.47509 * 209.99861 * 13 12 10 34 34 H 1.09001 * 109.46992 * 305.00579 * 18 14 13 35 35 H 1.08998 * 109.47097 * 64.99767 * 18 14 13 36 36 H 0.97001 * 119.99810 * 180.02562 * 22 21 19 37 37 H 1.07999 * 119.21323 * 179.70386 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3014 0.0939 0.0006 7 6 5.6864 0.1953 0.0017 8 6 6.5062 -0.9789 0.0023 9 7 7.1565 -1.9102 0.0009 10 6 6.2903 1.5302 0.0022 11 8 7.5022 1.6538 0.0036 12 7 5.4992 2.6198 0.0021 13 6 6.1105 3.9510 0.0032 14 6 6.3245 4.4152 -1.4389 15 1 5.3786 4.3719 -1.9787 16 6 7.3055 3.5367 -2.0967 17 7 8.0615 2.8580 -2.6065 18 6 6.8467 5.8533 -1.4397 19 6 6.9409 6.3528 -2.8584 20 1 6.6571 5.7087 -3.6776 21 6 7.3893 7.6320 -3.1105 22 7 7.4711 8.0681 -4.3486 23 14 7.8808 8.7458 -1.6936 24 1 9.3249 8.5643 -1.3992 25 1 7.6252 10.1607 -2.0646 26 1 7.0828 8.3976 -0.4906 27 6 4.1607 2.5102 0.0071 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8901 31 1 3.8201 -0.8729 0.0006 32 1 7.0706 3.9095 0.5177 33 1 5.4530 4.6524 0.5169 34 1 6.1635 6.4882 -0.8755 35 1 7.8337 5.8817 -0.9781 36 1 7.7869 8.9679 -4.5260 37 1 3.5585 3.4067 0.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025248114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:44 Heat of formation + Delta-G solvation = -54.540806 kcal Electronic energy + Delta-G solvation = -24972.470435 eV Core-core repulsion = 21101.123688 eV Total energy + Delta-G solvation = -3871.346746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81288 -41.16540 -38.67258 -38.32446 -37.70272 -37.29272 -36.06825 -35.21930 -33.63296 -31.73988 -29.72538 -28.49307 -26.41097 -26.05711 -24.48036 -23.36924 -22.62846 -20.58534 -19.11783 -18.85623 -18.41912 -18.34136 -18.07634 -17.44077 -17.23193 -17.07846 -16.74740 -16.09973 -15.21963 -15.18521 -15.10258 -14.61806 -14.56279 -14.36286 -14.31619 -14.25881 -13.99588 -13.86751 -13.66877 -13.58717 -13.34396 -13.13122 -12.79647 -12.75483 -12.60733 -12.04806 -11.98298 -11.68159 -11.67382 -11.64376 -11.41634 -11.32127 -11.17006 -10.70897 -9.34337 -8.21309 -6.27850 -0.74761 0.01271 0.91875 1.33933 1.48099 1.50372 1.51918 1.59904 1.89820 1.95281 1.99777 2.01446 2.44953 2.58817 2.77663 3.09132 3.18848 3.28491 3.53539 3.61026 3.73426 3.81240 4.06744 4.35265 4.39917 4.47548 4.53441 4.58700 4.60482 4.72247 4.78438 4.91995 5.09185 5.23403 5.40916 5.43347 5.59653 5.66774 6.26499 6.39990 6.56200 6.76692 6.78637 6.84556 7.36929 8.95522 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003779 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.786553 B = 7407.532091 C = 8845.731885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.538 3.462 4 O -0.528 6.528 5 C -0.257 4.257 6 C 0.125 3.875 7 C -0.200 4.200 8 C 0.296 3.704 9 N -0.469 5.469 10 C 0.530 3.470 11 O -0.542 6.542 12 N -0.477 5.477 13 C 0.090 3.910 14 C 0.006 3.994 15 H 0.139 0.861 16 C 0.232 3.768 17 N -0.501 5.501 18 C -0.002 4.002 19 C -0.530 4.530 20 H 0.027 0.973 21 C 0.001 3.999 22 N -0.957 5.957 23 Si 0.945 3.055 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.204 1.204 27 C 0.285 3.715 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.184 0.816 32 H 0.110 0.890 33 H 0.192 0.808 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.323 -10.569 17.124 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.384 3.616 4 O -0.419 6.419 5 C -0.263 4.263 6 C 0.101 3.899 7 C -0.209 4.209 8 C -0.018 4.018 9 N -0.146 5.146 10 C 0.328 3.672 11 O -0.421 6.421 12 N -0.180 5.180 13 C -0.030 4.030 14 C -0.016 4.016 15 H 0.157 0.843 16 C -0.085 4.085 17 N -0.177 5.177 18 C -0.041 4.041 19 C -0.569 4.569 20 H 0.045 0.955 21 C -0.195 4.195 22 N -0.597 5.597 23 Si 0.768 3.232 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.125 1.125 27 C 0.148 3.852 28 H 0.145 0.855 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.201 0.799 32 H 0.128 0.872 33 H 0.210 0.790 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.483 -12.509 16.263 26.956 hybrid contribution 0.430 1.092 -0.496 1.274 sum -17.053 -11.418 15.767 25.880 Atomic orbital electron populations 1.23574 0.73962 1.05656 1.02936 1.86501 1.25302 1.31601 1.84050 1.20164 0.87549 0.81793 0.72100 1.90903 1.66828 1.36350 1.47771 1.18125 0.90614 0.92615 1.24954 1.22136 0.89132 1.00643 0.78004 1.17331 0.92096 0.86245 1.25186 1.25021 0.92590 0.92152 0.92017 1.81211 1.08123 1.13025 1.12231 1.18265 0.86630 0.84799 0.77546 1.91023 1.14627 1.86304 1.50157 1.45357 1.06786 1.09928 1.55880 1.22848 1.04391 0.79994 0.95772 1.19647 0.95294 0.92384 0.94270 0.84308 1.29780 0.94000 0.92132 0.92567 1.81087 1.11848 1.13419 1.11396 1.19623 0.98569 0.89889 0.96028 1.21366 1.43896 0.98590 0.93001 0.95497 1.26064 0.94976 1.00145 0.98351 1.70098 1.48839 1.18662 1.22143 0.85762 0.79175 0.77108 0.81184 1.21283 1.22096 1.12505 1.23177 0.82435 1.01414 0.78141 0.85457 0.91314 0.91797 0.79880 0.87206 0.79034 0.89126 0.95587 0.92807 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.57 113.37 1.20 1.39 16 2 O -0.36 -3.66 9.83 -56.64 -0.56 -4.22 16 3 C 0.54 6.39 7.88 70.23 0.55 6.95 16 4 O -0.53 -8.38 16.06 19.76 0.32 -8.06 16 5 C -0.26 -2.66 5.86 -20.21 -0.12 -2.78 16 6 C 0.13 1.55 9.43 23.10 0.22 1.77 16 7 C -0.20 -4.30 5.93 -19.72 -0.12 -4.42 16 8 C 0.30 8.43 15.06 88.33 1.33 9.76 16 9 N -0.47 -15.70 18.54 19.00 0.35 -15.35 16 10 C 0.53 13.21 6.91 86.42 0.60 13.80 16 11 O -0.54 -19.22 14.57 -4.73 -0.07 -19.28 16 12 N -0.48 -7.41 2.47 -643.41 -1.59 -9.00 16 13 C 0.09 1.35 4.89 86.38 0.42 1.77 16 14 C 0.01 0.16 2.42 -12.60 -0.03 0.13 16 15 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 16 C 0.23 9.04 11.74 89.44 1.05 10.09 16 17 N -0.50 -23.46 18.27 20.01 0.37 -23.09 16 18 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 19 C -0.53 -26.33 9.15 25.60 0.23 -26.09 16 20 H 0.03 1.54 7.84 -2.91 -0.02 1.52 16 21 C 0.00 0.06 5.47 84.65 0.46 0.53 16 22 N -0.96 -57.44 13.96 21.45 0.30 -57.14 16 23 Si 0.94 38.33 27.47 68.60 1.88 40.22 16 24 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.20 -6.34 6.54 99.48 0.65 -5.69 16 27 C 0.29 2.43 9.79 84.30 0.83 3.26 16 28 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.18 1.36 7.65 -2.91 -0.02 1.33 16 32 H 0.11 2.00 7.37 -2.38 -0.02 1.99 16 33 H 0.19 0.42 7.97 -2.39 -0.02 0.40 16 34 H 0.09 2.30 7.20 -2.39 -0.02 2.28 16 35 H 0.03 0.90 7.57 -2.39 -0.02 0.88 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.24 0.19 7.47 -2.91 -0.02 0.17 16 Total: -1.00 -90.56 344.42 8.81 -81.75 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: 1.08 Total: -2.00 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.73 Total: 16.18 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -0.57 Total: -104.59 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.31 Total: -31.56 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.88 Total: 40.22 kcal Total: -90.56 8.81 -81.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025248114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.211 kcal (2) G-P(sol) polarization free energy of solvation -90.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds