Wall clock time and date at job start Fri Apr 10 2020 18:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46836 * 269.99914 * 3 2 1 5 5 H 1.48495 * 109.47208 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00044 * 3 2 1 7 7 C 1.39055 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 359.97438 * 7 2 1 9 9 N 1.36871 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00119 * 180.02562 * 9 7 2 11 11 O 1.21590 * 119.99697 * 359.97438 * 10 9 7 12 12 C 1.47722 * 120.00115 * 180.02562 * 10 9 7 13 13 C 1.39667 * 120.15232 * 359.97438 * 12 10 9 14 14 C 1.37916 * 119.84824 * 179.97438 * 13 12 10 15 15 C 1.38395 * 120.15170 * 0.26459 * 14 13 12 16 16 C 1.38364 * 120.30245 * 359.47918 * 15 14 13 17 17 C 1.50701 * 119.92110 * 180.26057 * 16 15 14 18 18 O 1.42896 * 109.47114 * 270.25501 * 17 16 15 19 19 C 1.35898 * 117.00223 * 180.02562 * 18 17 16 20 20 C 1.38770 * 120.03944 * 359.72205 * 19 18 17 21 21 C 1.38132 * 119.99601 * 179.74928 * 20 19 18 22 22 C 1.38258 * 120.07799 * 0.52892 * 21 20 19 23 23 C 1.38476 * 120.08541 * 359.75117 * 22 21 20 24 24 F 1.35092 * 120.00134 * 180.02562 * 23 22 21 25 25 C 1.38385 * 120.00348 * 359.97305 * 23 22 21 26 26 C 1.37953 * 120.15010 * 0.51750 * 16 15 14 27 27 H 0.96995 * 119.99146 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00144 * 359.97438 * 9 7 2 29 29 H 1.07999 * 120.07572 * 359.96487 * 13 12 10 30 30 H 1.08002 * 119.92149 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.85108 * 179.74765 * 15 14 13 32 32 H 1.08994 * 109.47229 * 30.25654 * 17 16 15 33 33 H 1.09000 * 109.46873 * 150.25635 * 17 16 15 34 34 H 1.08001 * 120.00510 * 0.02562 * 20 19 18 35 35 H 1.07998 * 119.96501 * 180.27651 * 21 20 19 36 36 H 1.07998 * 119.95746 * 179.76962 * 22 21 20 37 37 H 1.07998 * 120.04423 * 180.02562 * 25 23 22 38 38 H 1.08007 * 120.07685 * 179.76388 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0463 -1.4001 5 1 1.4453 2.6527 0.7000 6 1 3.5453 1.4400 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 1.4688 -2.1395 -0.0005 9 7 3.3776 -1.2044 0.0000 10 6 4.0514 -2.3716 -0.0011 11 8 3.4434 -3.4245 -0.0020 12 6 5.5286 -2.3716 0.0001 13 6 6.2303 -1.1640 0.0017 14 6 7.6094 -1.1714 0.0033 15 6 8.2981 -2.3717 -0.0022 16 6 7.6094 -3.5718 0.0015 17 6 8.3681 -4.8739 0.0013 18 8 8.6094 -5.2845 -1.3459 19 6 9.2874 -6.4487 -1.5242 20 6 9.7167 -7.1779 -0.4244 21 6 10.4013 -8.3638 -0.6065 22 6 10.6691 -8.8201 -1.8839 23 6 10.2472 -8.0921 -2.9837 24 9 10.5093 -8.5398 -4.2311 25 6 9.5562 -6.9065 -2.8052 26 6 6.2299 -3.5790 -0.0001 27 1 -0.4848 0.8401 -0.0004 28 1 3.8627 -0.3643 0.0004 29 1 5.6940 -0.2265 0.0016 30 1 8.1531 -0.2382 0.0041 31 1 9.3781 -2.3718 -0.0051 32 1 9.3194 -4.7402 0.5163 33 1 7.7815 -5.6362 0.5140 34 1 9.5118 -6.8206 0.5740 35 1 10.7313 -8.9331 0.2498 36 1 11.2077 -9.7456 -2.0241 37 1 9.2265 -6.3384 -3.6625 38 1 5.6935 -4.5165 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079310111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:15 Heat of formation + Delta-G solvation = -62.728137 kcal Electronic energy + Delta-G solvation = -23938.243371 eV Core-core repulsion = 20046.621634 eV Total energy + Delta-G solvation = -3891.621737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.20100 -40.48690 -39.49221 -37.92708 -37.18838 -34.20532 -32.60241 -31.74968 -30.99078 -30.78973 -29.94398 -26.72409 -25.42472 -23.28807 -22.89570 -22.58313 -21.46157 -19.44272 -18.88031 -18.76949 -17.12462 -16.63159 -16.38338 -16.27501 -16.25718 -15.85617 -15.66538 -15.14398 -14.81844 -14.44494 -14.13179 -13.95241 -13.84741 -13.44980 -13.22870 -12.97522 -12.70231 -12.55267 -12.41902 -12.29846 -12.02871 -11.58299 -11.37464 -11.32190 -11.16354 -10.92682 -10.70434 -10.11061 -9.75335 -9.21486 -8.86645 -8.71072 -8.69946 -8.60494 -8.34065 -6.50322 -3.94156 0.79811 0.97000 1.06927 1.37930 2.82513 2.92864 2.98155 3.05262 3.26458 3.53875 3.95199 4.04556 4.31939 4.34273 4.42151 4.61447 4.63944 4.69900 4.75560 4.90619 5.04488 5.06491 5.09197 5.16520 5.19419 5.40591 5.55215 5.60961 5.72680 5.75325 5.88617 5.96399 5.98746 6.09907 6.38599 6.48557 6.52191 6.61369 6.98741 7.07100 7.40161 7.99563 8.42801 8.77870 9.24303 9.69414 10.61381 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002375 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.071862 B =11785.337315 C =12194.514238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.300 4.300 8 H 0.125 0.875 9 N -0.568 5.568 10 C 0.473 3.527 11 O -0.579 6.579 12 C -0.096 4.096 13 C -0.097 4.097 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.109 4.109 17 C 0.106 3.894 18 O -0.301 6.301 19 C 0.166 3.834 20 C -0.222 4.222 21 C -0.050 4.050 22 C -0.197 4.197 23 C 0.138 3.862 24 F -0.135 7.135 25 C -0.192 4.192 26 C -0.049 4.049 27 H 0.278 0.722 28 H 0.372 0.628 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.024 -8.772 0.030 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.704 3.296 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.429 4.429 8 H 0.142 0.858 9 N -0.205 5.205 10 C 0.262 3.738 11 O -0.464 6.464 12 C -0.100 4.100 13 C -0.116 4.116 14 C -0.143 4.143 15 C -0.114 4.114 16 C -0.109 4.109 17 C 0.032 3.968 18 O -0.215 6.215 19 C 0.119 3.881 20 C -0.241 4.241 21 C -0.068 4.068 22 C -0.216 4.216 23 C 0.119 3.881 24 F -0.114 7.114 25 C -0.211 4.211 26 C -0.068 4.068 27 H 0.088 0.912 28 H 0.206 0.794 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.260 -9.197 -0.153 25.013 hybrid contribution 0.571 1.341 -0.033 1.458 sum 23.832 -7.856 -0.186 25.094 Atomic orbital electron populations 1.69599 1.05769 1.28062 1.46838 1.25135 0.95595 0.98273 0.97195 0.86683 0.79956 0.83696 0.79307 1.19137 1.19673 1.19275 1.19557 0.79201 0.96960 1.47141 0.85785 1.42209 1.07658 1.06413 1.64188 1.17555 0.85718 0.84599 0.85949 1.90642 1.69045 1.30694 1.55981 1.20328 0.94840 0.93411 1.01438 1.21448 0.94508 0.97555 0.98117 1.20992 0.93946 0.97921 1.01479 1.21029 0.99530 0.91771 0.99030 1.19272 0.93375 0.93154 1.05137 1.21662 0.99369 0.94359 0.81441 1.86219 1.69930 1.35533 1.29780 1.18663 0.90589 0.85752 0.93067 1.21384 1.05819 0.98224 0.98641 1.20786 0.94937 0.94534 0.96538 1.21036 1.06477 1.02385 0.91738 1.17289 0.97921 0.93341 0.79555 1.91515 1.91959 1.88748 1.39158 1.20302 1.05993 0.97913 0.96936 1.21115 0.92389 0.98490 0.94821 0.91160 0.79390 0.85941 0.85619 0.86015 0.90825 0.90560 0.84590 0.84670 0.84695 0.83816 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.46 13.95 55.50 0.77 -23.69 16 2 C 0.04 1.16 5.50 -17.45 -0.10 1.06 16 3 Si 0.88 18.72 27.74 -169.99 -4.72 14.01 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 7 C -0.30 -8.38 10.16 -15.00 -0.15 -8.54 16 8 H 0.12 3.94 7.38 -52.49 -0.39 3.55 16 9 N -0.57 -13.72 5.03 -11.87 -0.06 -13.78 16 10 C 0.47 11.27 7.72 -12.39 -0.10 11.18 16 11 O -0.58 -15.98 15.92 5.29 0.08 -15.89 16 12 C -0.10 -1.81 5.87 -104.97 -0.62 -2.42 16 13 C -0.10 -1.50 9.54 -39.17 -0.37 -1.88 16 14 C -0.13 -1.56 10.03 -39.64 -0.40 -1.96 16 15 C -0.09 -1.12 9.69 -39.48 -0.38 -1.50 16 16 C -0.11 -1.44 5.50 -104.68 -0.58 -2.01 16 17 C 0.11 1.11 4.86 36.01 0.17 1.28 16 18 O -0.30 -3.70 10.12 -19.42 -0.20 -3.89 16 19 C 0.17 1.80 6.69 -39.22 -0.26 1.54 16 20 C -0.22 -1.91 9.04 -39.42 -0.36 -2.27 16 21 C -0.05 -0.37 10.04 -39.61 -0.40 -0.77 16 22 C -0.20 -1.63 10.02 -39.49 -0.40 -2.03 16 23 C 0.14 1.40 7.30 -39.44 -0.29 1.12 16 24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 25 C -0.19 -2.08 9.97 -39.37 -0.39 -2.47 16 26 C -0.05 -0.81 9.24 -39.17 -0.36 -1.17 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.37 7.85 3.79 -40.82 -0.15 7.69 16 29 H 0.12 1.79 6.41 -52.49 -0.34 1.45 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.07 0.58 7.59 -51.93 -0.39 0.18 16 33 H 0.08 0.72 7.61 -51.93 -0.40 0.33 16 34 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.14 2.33 7.65 -52.48 -0.40 1.93 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -32.36 337.27 -7.64 -40.00 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.68 Total: 10.43 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -4.97 Total: -10.85 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.71 Total: -37.47 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.11 Total: -19.79 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.72 Total: 14.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.36 -7.64 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.725 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds