Wall clock time and date at job start Fri Apr 10 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46836 * 269.99914 * 3 2 1 5 5 H 1.48495 * 109.47208 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00044 * 3 2 1 7 7 C 1.39055 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 359.97438 * 7 2 1 9 9 N 1.36871 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00119 * 180.02562 * 9 7 2 11 11 O 1.21590 * 119.99697 * 359.97438 * 10 9 7 12 12 C 1.47722 * 120.00115 * 180.02562 * 10 9 7 13 13 C 1.39667 * 120.15232 * 359.97438 * 12 10 9 14 14 C 1.37916 * 119.84824 * 179.97438 * 13 12 10 15 15 C 1.38395 * 120.15170 * 0.26459 * 14 13 12 16 16 C 1.38364 * 120.30245 * 359.47918 * 15 14 13 17 17 C 1.50701 * 119.92110 * 180.26057 * 16 15 14 18 18 O 1.42896 * 109.47114 * 270.25501 * 17 16 15 19 19 C 1.35898 * 117.00223 * 180.02562 * 18 17 16 20 20 C 1.38770 * 120.03944 * 359.72205 * 19 18 17 21 21 C 1.38132 * 119.99601 * 179.74928 * 20 19 18 22 22 C 1.38258 * 120.07799 * 0.52892 * 21 20 19 23 23 C 1.38476 * 120.08541 * 359.75117 * 22 21 20 24 24 F 1.35092 * 120.00134 * 180.02562 * 23 22 21 25 25 C 1.38385 * 120.00348 * 359.97305 * 23 22 21 26 26 C 1.37953 * 120.15010 * 0.51750 * 16 15 14 27 27 H 0.96995 * 119.99146 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00144 * 359.97438 * 9 7 2 29 29 H 1.07999 * 120.07572 * 359.96487 * 13 12 10 30 30 H 1.08002 * 119.92149 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.85108 * 179.74765 * 15 14 13 32 32 H 1.08994 * 109.47229 * 30.25654 * 17 16 15 33 33 H 1.09000 * 109.46873 * 150.25635 * 17 16 15 34 34 H 1.08001 * 120.00510 * 0.02562 * 20 19 18 35 35 H 1.07998 * 119.96501 * 180.27651 * 21 20 19 36 36 H 1.07998 * 119.95746 * 179.76962 * 22 21 20 37 37 H 1.07998 * 120.04423 * 180.02562 * 25 23 22 38 38 H 1.08007 * 120.07685 * 179.76388 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0463 -1.4001 5 1 1.4453 2.6527 0.7000 6 1 3.5453 1.4400 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 1.4688 -2.1395 -0.0005 9 7 3.3776 -1.2044 0.0000 10 6 4.0514 -2.3716 -0.0011 11 8 3.4434 -3.4245 -0.0020 12 6 5.5286 -2.3716 0.0001 13 6 6.2303 -1.1640 0.0017 14 6 7.6094 -1.1714 0.0033 15 6 8.2981 -2.3717 -0.0022 16 6 7.6094 -3.5718 0.0015 17 6 8.3681 -4.8739 0.0013 18 8 8.6094 -5.2845 -1.3459 19 6 9.2874 -6.4487 -1.5242 20 6 9.7167 -7.1779 -0.4244 21 6 10.4013 -8.3638 -0.6065 22 6 10.6691 -8.8201 -1.8839 23 6 10.2472 -8.0921 -2.9837 24 9 10.5093 -8.5398 -4.2311 25 6 9.5562 -6.9065 -2.8052 26 6 6.2299 -3.5790 -0.0001 27 1 -0.4848 0.8401 -0.0004 28 1 3.8627 -0.3643 0.0004 29 1 5.6940 -0.2265 0.0016 30 1 8.1531 -0.2382 0.0041 31 1 9.3781 -2.3718 -0.0051 32 1 9.3194 -4.7402 0.5163 33 1 7.7815 -5.6362 0.5140 34 1 9.5118 -6.8206 0.5740 35 1 10.7313 -8.9331 0.2498 36 1 11.2077 -9.7456 -2.0241 37 1 9.2265 -6.3384 -3.6625 38 1 5.6935 -4.5165 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079310111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:14 Heat of formation + Delta-G solvation = -83.348714 kcal Electronic energy + Delta-G solvation = -23939.137546 eV Core-core repulsion = 20046.621634 eV Total energy + Delta-G solvation = -3892.515913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.98046 -41.36834 -40.84489 -39.33455 -38.10648 -36.22729 -34.12172 -33.25059 -32.04775 -31.74674 -30.66846 -27.83016 -27.11642 -24.35897 -23.95309 -23.47673 -22.52043 -21.26597 -20.50141 -19.61489 -18.39964 -17.53802 -17.40734 -17.13934 -17.06655 -17.01274 -16.73450 -16.56034 -15.99836 -15.72031 -15.57002 -15.26092 -14.91252 -14.70734 -14.67392 -14.29209 -13.94992 -13.78165 -13.42552 -13.28814 -13.04665 -12.78868 -12.63309 -12.52705 -12.25285 -12.03310 -11.91460 -11.85466 -11.64867 -10.67895 -10.39762 -9.96539 -9.92423 -9.91640 -9.32195 -8.53115 -6.11679 -0.12137 0.10463 0.23711 0.28303 1.23783 1.31759 1.39226 1.82923 2.14855 2.20797 2.58583 2.74128 2.84889 3.18709 3.34885 3.59687 3.80162 3.82750 3.91629 3.99293 4.08422 4.11296 4.17033 4.23643 4.32635 4.40312 4.46025 4.60704 4.80857 4.98306 5.00471 5.08867 5.21813 5.32425 5.34397 5.38493 5.42019 5.49409 5.71299 5.83026 5.91107 6.32273 6.45164 6.72398 7.22512 7.78404 8.63628 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002375 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.071862 B =11785.337315 C =12194.514238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.231 1.231 7 C -0.336 4.336 8 H 0.059 0.941 9 N -0.569 5.569 10 C 0.475 3.525 11 O -0.630 6.630 12 C -0.133 4.133 13 C -0.096 4.096 14 C -0.114 4.114 15 C -0.071 4.071 16 C -0.107 4.107 17 C 0.104 3.896 18 O -0.325 6.325 19 C 0.147 3.853 20 C -0.218 4.218 21 C -0.044 4.044 22 C -0.194 4.194 23 C 0.120 3.880 24 F -0.145 7.145 25 C -0.212 4.212 26 C -0.063 4.063 27 H 0.284 0.716 28 H 0.390 0.610 29 H 0.132 0.868 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.427 -7.182 1.224 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.777 3.223 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.154 1.154 7 C -0.465 4.465 8 H 0.077 0.923 9 N -0.208 5.208 10 C 0.266 3.734 11 O -0.518 6.518 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.132 4.132 15 C -0.089 4.089 16 C -0.107 4.107 17 C 0.030 3.970 18 O -0.239 6.239 19 C 0.101 3.899 20 C -0.237 4.237 21 C -0.061 4.061 22 C -0.212 4.212 23 C 0.100 3.900 24 F -0.123 7.123 25 C -0.232 4.232 26 C -0.083 4.083 27 H 0.094 0.906 28 H 0.227 0.773 29 H 0.150 0.850 30 H 0.188 0.812 31 H 0.184 0.816 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.176 0.824 35 H 0.189 0.811 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 28.696 -7.616 1.041 29.707 hybrid contribution -0.929 0.612 -0.410 1.186 sum 27.766 -7.005 0.631 28.643 Atomic orbital electron populations 1.69762 1.08109 1.29805 1.48117 1.26196 0.96576 1.02784 0.95401 0.85465 0.79744 0.76607 0.80475 1.17587 1.18938 1.15396 1.19083 0.81101 0.95435 1.50843 0.92282 1.41930 1.06136 1.07390 1.65320 1.18590 0.88246 0.83605 0.83002 1.90593 1.71123 1.32670 1.57462 1.19950 0.91274 0.95993 1.06417 1.21624 0.96170 0.96268 0.97459 1.21476 0.92422 1.00115 0.99143 1.21625 1.01736 0.90611 0.94956 1.19541 0.91781 0.95559 1.03787 1.21797 1.00872 0.93103 0.81244 1.86153 1.70664 1.36421 1.30667 1.18805 0.91487 0.85960 0.93649 1.21695 1.04920 0.98197 0.98879 1.21223 0.93602 0.94088 0.97225 1.21377 1.05667 1.02711 0.91492 1.17521 0.98841 0.93719 0.79874 1.91487 1.92131 1.88828 1.39882 1.20375 1.07030 0.98601 0.97166 1.21101 0.94267 0.96974 0.95945 0.90578 0.77298 0.84994 0.81195 0.81559 0.87012 0.90160 0.82361 0.81132 0.82588 0.84826 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.90 13.95 21.68 0.30 -54.60 16 2 C -0.01 -0.50 5.50 84.96 0.47 -0.03 16 3 Si 0.96 38.14 27.74 68.60 1.90 40.04 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 7 C -0.34 -20.17 10.16 84.10 0.85 -19.32 16 8 H 0.06 4.20 7.38 -2.91 -0.02 4.18 16 9 N -0.57 -28.59 5.03 -309.73 -1.56 -30.15 16 10 C 0.48 23.97 7.72 86.75 0.67 24.64 16 11 O -0.63 -37.95 15.92 -4.00 -0.06 -38.02 16 12 C -0.13 -5.00 5.87 -20.09 -0.12 -5.12 16 13 C -0.10 -2.70 9.54 22.54 0.22 -2.49 16 14 C -0.11 -2.21 10.03 22.23 0.22 -1.99 16 15 C -0.07 -1.29 9.69 22.34 0.22 -1.07 16 16 C -0.11 -2.50 5.50 -19.90 -0.11 -2.61 16 17 C 0.10 1.85 4.86 71.24 0.35 2.19 16 18 O -0.32 -7.42 10.12 -92.41 -0.94 -8.36 16 19 C 0.15 2.97 6.69 22.50 0.15 3.12 16 20 C -0.22 -3.08 9.04 22.37 0.20 -2.87 16 21 C -0.04 -0.49 10.04 22.25 0.22 -0.27 16 22 C -0.19 -2.73 10.02 22.33 0.22 -2.51 16 23 C 0.12 2.35 7.30 22.36 0.16 2.51 16 24 F -0.14 -3.11 17.27 44.97 0.78 -2.33 16 25 C -0.21 -4.59 9.97 22.41 0.22 -4.36 16 26 C -0.06 -2.11 9.24 22.54 0.21 -1.90 16 27 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.39 16.22 3.79 -92.70 -0.35 15.86 16 29 H 0.13 3.39 6.41 -2.91 -0.02 3.37 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.11 1.15 7.59 -2.39 -0.02 1.13 16 33 H 0.08 1.35 7.61 -2.39 -0.02 1.33 16 34 H 0.16 1.45 6.30 -2.91 -0.02 1.43 16 35 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.11 4.16 7.65 -2.91 -0.02 4.14 16 Total: -1.00 -81.46 337.27 5.29 -76.17 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.71 Total: 29.32 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.16 Total: -12.08 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.26 Total: -84.75 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -1.00 Total: -46.38 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -81.46 5.29 -76.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.175 kcal (2) G-P(sol) polarization free energy of solvation -81.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds