Wall clock time and date at job start Fri Apr 10 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00307 * 2 1 4 4 C 1.50698 * 109.47073 * 270.00562 * 3 2 1 5 5 H 1.07994 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00036 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99775 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00332 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46927 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47280 * 120.00000 * 8 6 4 11 11 H 1.48504 * 109.47386 * 240.00090 * 8 6 4 12 12 C 1.34779 * 119.99867 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00342 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99778 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47069 * 180.02562 * 14 12 2 16 16 N 1.46907 * 109.47017 * 180.02562 * 15 14 12 17 17 C 1.46466 * 110.99815 * 296.18616 * 16 15 14 18 18 C 1.53247 * 109.85757 * 197.76737 * 17 16 15 19 19 S 1.81895 * 108.50806 * 297.99623 * 18 17 16 20 20 C 1.81901 * 101.91282 * 51.30588 * 19 18 17 21 21 C 1.46463 * 110.99983 * 62.16808 * 16 15 14 22 22 H 1.09004 * 109.40963 * 282.27221 * 21 16 15 23 23 C 1.50702 * 109.40788 * 42.11603 * 21 16 15 24 24 N 1.34774 * 120.00050 * 218.52035 * 23 21 16 25 25 O 1.21284 * 120.00009 * 38.24636 * 23 21 16 26 26 H 1.09004 * 109.47018 * 270.00024 * 1 2 3 27 27 H 1.09000 * 109.47258 * 29.99392 * 1 2 3 28 28 H 1.08996 * 109.47514 * 149.99993 * 1 2 3 29 29 H 1.08997 * 109.46744 * 30.00633 * 3 2 1 30 30 H 1.08998 * 109.46766 * 150.00142 * 3 2 1 31 31 H 0.96998 * 120.00413 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47504 * 60.00192 * 14 12 2 33 33 H 1.09002 * 109.47438 * 299.99780 * 14 12 2 34 34 H 1.08991 * 109.47047 * 59.99786 * 15 14 12 35 35 H 1.09002 * 109.46682 * 300.00086 * 15 14 12 36 36 H 1.09003 * 109.40966 * 317.88884 * 17 16 15 37 37 H 1.08998 * 109.40285 * 77.72876 * 17 16 15 38 38 H 1.08997 * 109.63209 * 57.70933 * 18 17 16 39 39 H 1.09000 * 109.62869 * 178.29296 * 18 17 16 40 40 H 1.08996 * 109.63229 * 188.98706 * 20 19 18 41 41 H 1.08999 * 109.62783 * 68.39626 * 20 19 18 42 42 H 0.97000 * 119.99876 * 0.02562 * 24 23 21 43 43 H 0.97003 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.8607 2.4166 -4.3672 10 1 2.7998 4.7374 -3.6678 11 1 4.9005 3.5258 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9075 -0.0011 17 6 0.8594 -5.0606 1.2256 18 6 0.4693 -6.5306 1.4139 19 16 -0.5706 -7.0364 0.0098 20 6 0.4351 -6.5096 -1.4113 21 6 0.8300 -5.0425 -1.2106 22 1 -0.0707 -4.4367 -1.1101 23 6 1.6211 -4.5693 -2.4028 24 7 1.0112 -3.8746 -3.3836 25 8 2.8076 -4.8093 -2.4773 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5138 31 1 4.0303 4.4439 -0.8503 32 1 0.7583 -2.5299 -0.8903 33 1 0.7590 -2.5303 0.8897 34 1 3.0061 -3.5776 0.8894 35 1 3.0061 -3.5775 -0.8905 36 1 1.4524 -4.7311 2.0788 37 1 -0.0432 -4.4536 1.1558 38 1 1.3678 -7.1469 1.4449 39 1 -0.0889 -6.6452 2.3430 40 1 -0.1454 -6.6105 -2.3283 41 1 1.3326 -7.1251 -1.4731 42 1 0.0632 -3.6788 -3.3219 43 1 1.5205 -3.5697 -4.1508 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271537690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:35 Heat of formation + Delta-G solvation = -58.768780 kcal Electronic energy + Delta-G solvation = -25349.490569 eV Core-core repulsion = 21749.237530 eV Total energy + Delta-G solvation = -3600.253039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65810 -38.97268 -37.55804 -34.88841 -33.93069 -32.80358 -32.27575 -31.96473 -29.05062 -27.49113 -25.79985 -24.99713 -24.02009 -22.69296 -21.83322 -19.97436 -18.51589 -17.64706 -17.36401 -16.74319 -16.56697 -16.47692 -15.92417 -15.37674 -15.14634 -15.09181 -14.71615 -14.37079 -14.22062 -13.76393 -13.58447 -13.45372 -13.06115 -12.75568 -12.46539 -12.22836 -12.15977 -12.07114 -11.98303 -11.71483 -11.67247 -11.23381 -10.93993 -10.82182 -10.62801 -10.35293 -10.19948 -9.84070 -9.71268 -9.65568 -9.02985 -8.62657 -8.47225 -8.03038 -7.69839 -6.07980 -4.12929 1.39129 2.04924 2.42277 3.13643 3.26590 3.32224 3.35538 3.39454 3.53743 3.94264 4.36269 4.41294 4.47046 4.62813 4.67344 4.83030 4.86991 4.95887 5.06309 5.10530 5.13368 5.26902 5.36308 5.41062 5.43698 5.55640 5.65229 5.78249 5.86934 6.11013 6.29750 6.58376 6.64724 6.72720 7.00424 7.12152 7.40158 7.48810 7.88052 8.07395 8.19252 8.35594 8.85896 9.04172 9.52300 11.00206 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.003486 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.608475 B = 8029.487770 C = 8646.797798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.507 3.493 13 O -0.537 6.537 14 C -0.177 4.177 15 C 0.059 3.941 16 N -0.527 5.527 17 C 0.052 3.948 18 C -0.077 4.077 19 S -0.260 6.260 20 C -0.067 4.067 21 C 0.069 3.931 22 H 0.074 0.926 23 C 0.523 3.477 24 N -0.852 5.852 25 O -0.514 6.514 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.401 0.599 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -18.918 1.064 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.292 3.708 13 O -0.414 6.414 14 C -0.219 4.219 15 C -0.068 4.068 16 N -0.251 5.251 17 C -0.077 4.077 18 C -0.226 4.226 19 S -0.033 6.033 20 C -0.216 4.216 21 C -0.045 4.045 22 H 0.091 0.909 23 C 0.304 3.696 24 N -0.416 5.416 25 O -0.387 6.387 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.229 0.771 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.236 -19.904 1.256 23.397 hybrid contribution 0.237 1.961 -1.271 2.349 sum -11.999 -17.943 -0.015 21.585 Atomic orbital electron populations 1.21606 0.81643 1.02330 1.00326 1.48179 1.06039 1.07927 1.71407 1.19294 0.92553 0.78053 0.97549 1.21440 1.36593 1.06212 0.92240 0.92538 1.24943 0.95324 0.96401 0.97470 1.69937 1.38334 1.14342 1.30682 0.86439 0.78181 0.78252 0.84507 1.19877 1.20946 1.20796 1.20101 0.88071 0.84834 0.77754 1.90695 1.13776 1.87141 1.49788 1.22402 1.00585 0.95877 1.03029 1.22348 0.95083 0.82670 1.06733 1.61329 1.28105 1.35787 0.99894 1.22322 0.97531 0.94852 0.92996 1.23590 1.02046 0.98988 0.97970 1.86919 1.32328 1.81499 1.02562 1.23407 1.02998 0.96440 0.98753 1.21790 0.95656 0.96595 0.90425 0.90873 1.20220 0.87922 0.77744 0.83707 1.43904 1.14326 1.58570 1.24835 1.90787 1.14965 1.55243 1.77750 0.93792 0.90731 0.92877 0.95048 0.93836 0.92725 0.90219 0.89628 0.89096 0.87446 0.88682 0.92826 0.88605 0.87165 0.87201 0.87983 0.77114 0.76149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.53 2.86 -182.96 -0.52 -13.05 16 3 C 0.24 6.38 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.51 10.34 7.67 -10.98 -0.08 10.26 16 13 O -0.54 -13.55 15.56 5.56 0.09 -13.46 16 14 C -0.18 -2.49 3.62 -27.88 -0.10 -2.59 16 15 C 0.06 0.86 4.02 -3.82 -0.02 0.84 16 16 N -0.53 -6.05 4.37 -228.43 -1.00 -7.05 16 17 C 0.05 0.46 4.59 -3.93 -0.02 0.45 16 18 C -0.08 -0.61 6.69 37.29 0.25 -0.36 16 19 S -0.26 -2.32 22.40 -107.50 -2.41 -4.73 16 20 C -0.07 -0.59 5.95 37.29 0.22 -0.37 16 21 C 0.07 0.69 1.56 -68.97 -0.11 0.59 16 22 H 0.07 0.62 7.05 -51.93 -0.37 0.26 16 23 C 0.52 6.36 5.30 -10.99 -0.06 6.30 16 24 N -0.85 -7.53 8.87 31.22 0.28 -7.25 16 25 O -0.51 -8.65 15.78 5.55 0.09 -8.56 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.08 0.99 5.71 -51.93 -0.30 0.70 16 33 H 0.09 1.00 6.88 -51.93 -0.36 0.64 16 34 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 35 H 0.11 1.96 5.35 -51.93 -0.28 1.68 16 36 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 37 H 0.05 0.45 7.14 -51.93 -0.37 0.08 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.40 2.27 8.77 -40.82 -0.36 1.91 16 43 H 0.41 3.59 8.93 -40.82 -0.36 3.22 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -36.13 356.09 -8.57 -44.70 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.43 Total: 3.28 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.25 Total: 9.80 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.51 Total: -53.17 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.41 Total: -4.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.13 -8.57 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271537690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.065 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds