Wall clock time and date at job start Fri Apr 10 2020 18:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00307 * 2 1 4 4 C 1.50698 * 109.47073 * 270.00562 * 3 2 1 5 5 H 1.07994 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00036 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99775 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00332 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46927 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47280 * 120.00000 * 8 6 4 11 11 H 1.48504 * 109.47386 * 240.00090 * 8 6 4 12 12 C 1.34779 * 119.99867 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00342 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99778 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47069 * 180.02562 * 14 12 2 16 16 N 1.46907 * 109.47017 * 180.02562 * 15 14 12 17 17 C 1.46466 * 110.99815 * 296.18616 * 16 15 14 18 18 C 1.53247 * 109.85757 * 197.76737 * 17 16 15 19 19 S 1.81895 * 108.50806 * 297.99623 * 18 17 16 20 20 C 1.81901 * 101.91282 * 51.30588 * 19 18 17 21 21 C 1.46463 * 110.99983 * 62.16808 * 16 15 14 22 22 H 1.09004 * 109.40963 * 282.27221 * 21 16 15 23 23 C 1.50702 * 109.40788 * 42.11603 * 21 16 15 24 24 N 1.34774 * 120.00050 * 218.52035 * 23 21 16 25 25 O 1.21284 * 120.00009 * 38.24636 * 23 21 16 26 26 H 1.09004 * 109.47018 * 270.00024 * 1 2 3 27 27 H 1.09000 * 109.47258 * 29.99392 * 1 2 3 28 28 H 1.08996 * 109.47514 * 149.99993 * 1 2 3 29 29 H 1.08997 * 109.46744 * 30.00633 * 3 2 1 30 30 H 1.08998 * 109.46766 * 150.00142 * 3 2 1 31 31 H 0.96998 * 120.00413 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47504 * 60.00192 * 14 12 2 33 33 H 1.09002 * 109.47438 * 299.99780 * 14 12 2 34 34 H 1.08991 * 109.47047 * 59.99786 * 15 14 12 35 35 H 1.09002 * 109.46682 * 300.00086 * 15 14 12 36 36 H 1.09003 * 109.40966 * 317.88884 * 17 16 15 37 37 H 1.08998 * 109.40285 * 77.72876 * 17 16 15 38 38 H 1.08997 * 109.63209 * 57.70933 * 18 17 16 39 39 H 1.09000 * 109.62869 * 178.29296 * 18 17 16 40 40 H 1.08996 * 109.63229 * 188.98706 * 20 19 18 41 41 H 1.08999 * 109.62783 * 68.39626 * 20 19 18 42 42 H 0.97000 * 119.99876 * 0.02562 * 24 23 21 43 43 H 0.97003 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.8607 2.4166 -4.3672 10 1 2.7998 4.7374 -3.6678 11 1 4.9005 3.5258 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9075 -0.0011 17 6 0.8594 -5.0606 1.2256 18 6 0.4693 -6.5306 1.4139 19 16 -0.5706 -7.0364 0.0098 20 6 0.4351 -6.5096 -1.4113 21 6 0.8300 -5.0425 -1.2106 22 1 -0.0707 -4.4367 -1.1101 23 6 1.6211 -4.5693 -2.4028 24 7 1.0112 -3.8746 -3.3836 25 8 2.8076 -4.8093 -2.4773 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5138 31 1 4.0303 4.4439 -0.8503 32 1 0.7583 -2.5299 -0.8903 33 1 0.7590 -2.5303 0.8897 34 1 3.0061 -3.5776 0.8894 35 1 3.0061 -3.5775 -0.8905 36 1 1.4524 -4.7311 2.0788 37 1 -0.0432 -4.4536 1.1558 38 1 1.3678 -7.1469 1.4449 39 1 -0.0889 -6.6452 2.3430 40 1 -0.1454 -6.6105 -2.3283 41 1 1.3326 -7.1251 -1.4731 42 1 0.0632 -3.6788 -3.3219 43 1 1.5205 -3.5697 -4.1508 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271537690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:34 Heat of formation + Delta-G solvation = -88.571206 kcal Electronic energy + Delta-G solvation = -25350.782900 eV Core-core repulsion = 21749.237530 eV Total energy + Delta-G solvation = -3601.545369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65638 -40.49343 -38.53825 -36.63581 -34.84712 -34.77944 -33.45183 -32.66837 -30.46197 -29.00321 -27.29308 -25.79737 -25.45612 -24.07255 -22.86531 -20.93771 -19.98470 -18.73359 -18.52417 -18.24396 -17.97390 -17.36101 -17.11676 -16.93403 -16.29903 -16.22944 -15.99378 -15.73872 -15.10318 -14.75800 -14.62209 -14.50018 -14.22390 -14.10453 -13.83863 -13.52586 -13.48758 -13.37363 -13.10131 -12.95362 -12.88443 -12.74779 -12.52592 -12.41373 -12.23420 -11.92176 -11.69872 -11.15692 -10.71085 -10.67472 -10.66151 -10.58413 -9.51502 -9.44464 -8.70828 -8.24911 -6.39844 0.72753 1.33174 1.33936 1.37224 1.48053 1.58065 1.78880 2.24636 2.35430 2.43409 2.74308 3.04905 3.57357 3.70911 3.73759 3.85096 3.90816 3.96949 4.03734 4.18910 4.25003 4.31230 4.41368 4.48363 4.68157 4.71298 4.74016 4.76658 4.92865 4.94362 4.99826 5.14178 5.20696 5.53490 5.68531 5.80495 5.81597 5.90482 6.03472 6.40010 6.67138 6.76018 7.25874 7.26456 7.45654 8.82406 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.003486 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.608475 B = 8029.487770 C = 8646.797798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.267 1.267 11 H -0.284 1.284 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.154 4.154 15 C 0.071 3.929 16 N -0.536 5.536 17 C 0.049 3.951 18 C -0.073 4.073 19 S -0.263 6.263 20 C -0.063 4.063 21 C 0.072 3.928 22 H 0.101 0.899 23 C 0.517 3.483 24 N -0.836 5.836 25 O -0.570 6.570 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.024 0.976 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.419 0.581 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -19.851 0.489 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.137 3.863 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.192 1.192 11 H -0.210 1.210 12 C 0.285 3.715 13 O -0.480 6.480 14 C -0.196 4.196 15 C -0.057 4.057 16 N -0.261 5.261 17 C -0.079 4.079 18 C -0.221 4.221 19 S -0.035 6.035 20 C -0.212 4.212 21 C -0.041 4.041 22 H 0.119 0.881 23 C 0.299 3.701 24 N -0.401 5.401 25 O -0.448 6.448 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.102 0.898 42 H 0.250 0.750 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.613 -20.848 0.676 26.055 hybrid contribution 1.227 2.216 -1.050 2.742 sum -14.387 -18.631 -0.374 23.542 Atomic orbital electron populations 1.21949 0.77718 1.04034 1.02714 1.48202 1.08464 1.06268 1.71114 1.18748 0.91049 0.80523 0.96022 1.21721 1.36830 1.06419 0.93023 0.92813 1.25877 0.94912 0.96499 1.01990 1.70055 1.38936 1.14847 1.33013 0.85369 0.77800 0.78515 0.79136 1.18908 1.19231 1.21048 1.21202 0.87760 0.86511 0.76073 1.90667 1.16836 1.88139 1.52344 1.22316 1.00128 0.91326 1.05807 1.21985 0.95165 0.84451 1.04097 1.61245 1.29550 1.33722 1.01567 1.22455 0.97814 0.95877 0.91769 1.23623 1.01930 0.98020 0.98557 1.86964 1.32074 1.81734 1.02733 1.23370 1.02647 0.95186 0.99994 1.21881 0.95678 0.97770 0.88795 0.88143 1.20683 0.87395 0.77391 0.84593 1.43823 1.15286 1.57018 1.23938 1.90770 1.17485 1.57566 1.78997 0.90987 0.91504 0.88742 0.95762 0.98746 0.92404 0.87743 0.85856 0.90697 0.91376 0.88252 0.91071 0.89363 0.84860 0.85147 0.89823 0.74960 0.76110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.10 10.24 127.77 1.31 3.40 16 2 N -0.61 -25.01 2.86 -851.14 -2.43 -27.44 16 3 C 0.26 13.91 5.16 85.63 0.44 14.35 16 4 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.35 5.46 84.66 0.46 0.82 16 7 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 8 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.50 20.21 7.67 87.66 0.67 20.88 16 13 O -0.60 -31.65 15.56 -3.03 -0.05 -31.70 16 14 C -0.15 -3.97 3.62 29.85 0.11 -3.86 16 15 C 0.07 2.05 4.02 86.30 0.35 2.40 16 16 N -0.54 -11.42 4.37 -876.60 -3.83 -15.25 16 17 C 0.05 0.72 4.59 86.47 0.40 1.12 16 18 C -0.07 -0.93 6.69 72.06 0.48 -0.45 16 19 S -0.26 -3.89 22.40 -56.49 -1.27 -5.15 16 20 C -0.06 -0.98 5.95 72.07 0.43 -0.55 16 21 C 0.07 1.27 1.56 44.34 0.07 1.34 16 22 H 0.10 1.23 7.05 -2.38 -0.02 1.21 16 23 C 0.52 12.03 5.30 87.66 0.46 12.50 16 24 N -0.84 -13.14 8.87 -173.53 -1.54 -14.68 16 25 O -0.57 -19.74 15.78 -3.04 -0.05 -19.79 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 28 H 0.09 1.76 6.44 -2.39 -0.02 1.74 16 29 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 30 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.10 2.18 5.71 -2.39 -0.01 2.16 16 33 H 0.12 2.30 6.88 -2.39 -0.02 2.29 16 34 H 0.07 2.36 7.94 -2.39 -0.02 2.34 16 35 H 0.07 2.57 5.35 -2.39 -0.01 2.56 16 36 H 0.10 1.41 7.85 -2.39 -0.02 1.39 16 37 H 0.07 0.82 7.14 -2.39 -0.02 0.81 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.42 3.32 8.77 -92.71 -0.81 2.51 16 43 H 0.41 6.69 8.93 -92.71 -0.83 5.87 16 Total: -1.00 -84.62 356.09 -2.02 -86.64 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.60 Total: 15.57 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.42 Total: 21.05 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -7.52 Total: -113.51 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.10 Total: -51.49 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.27 Total: -5.15 kcal Total: -84.62 -2.02 -86.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271537690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.928 kcal (2) G-P(sol) polarization free energy of solvation -84.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds