Wall clock time and date at job start Fri Apr 10 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47626 * 2 1 4 4 C 1.46502 * 119.99721 * 270.00093 * 3 2 1 5 5 C 1.50698 * 109.47292 * 269.99589 * 4 3 2 6 6 H 1.08006 * 119.99504 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00184 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00204 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47153 * 59.99565 * 9 7 5 11 11 H 1.48498 * 109.47661 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46934 * 300.00016 * 9 7 5 13 13 C 1.34777 * 120.00059 * 89.99661 * 3 2 1 14 14 O 1.21284 * 119.99858 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00225 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47180 * 179.97438 * 15 13 3 17 17 C 1.46467 * 111.00366 * 64.53451 * 16 15 13 18 18 C 1.53251 * 109.86287 * 162.23347 * 17 16 15 19 19 S 1.81898 * 108.50441 * 62.00146 * 18 17 16 20 20 C 1.81897 * 101.91699 * 308.69838 * 19 18 17 21 21 C 1.46472 * 111.00176 * 298.55130 * 16 15 13 22 22 H 1.08996 * 109.40014 * 77.64732 * 21 16 15 23 23 C 1.50697 * 109.40196 * 317.88836 * 21 16 15 24 24 N 1.34784 * 119.99672 * 142.38581 * 23 21 16 25 25 O 1.21275 * 120.00562 * 322.38567 * 23 21 16 26 26 H 1.09000 * 109.47146 * 59.99626 * 1 2 3 27 27 H 1.08993 * 109.47725 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46976 * 300.00428 * 1 2 3 29 29 H 1.09003 * 109.46976 * 239.99572 * 2 1 3 30 30 H 1.09000 * 109.47146 * 120.00374 * 2 1 3 31 31 H 1.08994 * 109.47213 * 30.00251 * 4 3 2 32 32 H 1.09004 * 109.46578 * 149.99479 * 4 3 2 33 33 H 0.97000 * 120.00121 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46921 * 59.99382 * 15 13 3 35 35 H 1.09006 * 109.46567 * 299.99751 * 15 13 3 36 36 H 1.09002 * 109.40815 * 282.35388 * 17 16 15 37 37 H 1.09007 * 109.40374 * 42.19584 * 17 16 15 38 38 H 1.08996 * 109.63473 * 181.70978 * 18 17 16 39 39 H 1.09001 * 109.62709 * 302.29807 * 18 17 16 40 40 H 1.08994 * 109.63149 * 171.01368 * 20 19 18 41 41 H 1.09011 * 109.62753 * 291.60249 * 20 19 18 42 42 H 0.97000 * 119.99784 * 0.02562 * 24 23 21 43 43 H 0.96999 * 119.99679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2300 -1.0961 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6177 9 14 5.9134 2.0961 -3.4171 10 1 6.1402 0.6393 -3.5954 11 1 6.1611 2.7961 -4.7031 12 1 6.8413 2.6184 -2.3820 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1598 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3110 2.2058 3.5888 17 6 1.4099 3.3604 3.6062 18 6 1.4539 4.0346 4.9817 19 16 3.1459 4.6334 5.2773 20 6 4.1361 3.1473 4.9311 21 6 3.7227 2.5953 3.5626 22 1 3.8728 3.3619 2.8025 23 6 4.5679 1.3923 3.2318 24 7 5.6532 1.5272 2.4441 25 8 4.2716 0.3027 3.6745 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6877 -2.0283 32 1 2.0956 3.1410 -1.1384 33 1 3.6756 3.5167 -4.4436 34 1 2.6227 0.4187 2.5299 35 1 0.9443 1.0116 2.5302 36 1 1.7206 4.0739 2.8430 37 1 0.3923 3.0287 3.3991 38 1 0.7596 4.8746 5.0003 39 1 1.1810 3.3132 5.7520 40 1 5.1944 3.4076 4.9166 41 1 3.9511 2.3968 5.6998 42 1 5.8904 2.3987 2.0904 43 1 6.1974 0.7529 2.2315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271545365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:36 Heat of formation + Delta-G solvation = -80.769516 kcal Electronic energy + Delta-G solvation = -26263.382684 eV Core-core repulsion = 22662.175621 eV Total energy + Delta-G solvation = -3601.207063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91254 -40.26134 -38.17449 -36.75109 -34.95896 -34.77860 -32.71741 -32.31130 -31.57295 -29.33538 -27.04388 -25.72572 -24.74318 -24.02158 -23.13865 -21.27791 -20.01864 -18.78282 -18.59194 -18.29147 -17.90603 -17.32874 -17.16195 -16.78620 -16.39651 -16.04519 -15.83699 -15.59439 -15.13400 -14.84812 -14.70370 -14.48118 -14.40558 -14.03446 -13.79095 -13.40615 -13.34398 -13.28514 -13.06494 -13.02730 -12.65997 -12.50354 -12.44125 -12.31258 -12.14204 -11.88742 -11.71936 -11.21742 -11.16918 -10.70609 -10.64407 -10.62177 -9.44928 -9.35263 -8.70722 -8.21848 -6.36389 0.71255 1.28621 1.36914 1.39108 1.46929 1.52970 1.76103 2.26438 2.33833 2.42954 2.74929 3.08130 3.57786 3.68020 3.79809 3.85205 4.05888 4.07142 4.14013 4.28209 4.34882 4.38451 4.45450 4.50700 4.59441 4.69968 4.73617 4.91315 4.94393 5.03438 5.04466 5.20997 5.34186 5.52543 5.57427 5.71206 5.81072 5.83976 6.06614 6.27589 6.68489 6.76953 7.16502 7.27028 7.43080 8.84891 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.004939 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.811213 B = 5667.263727 C = 6216.774850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.264 3.736 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.470 3.530 14 O -0.578 6.578 15 C 0.032 3.968 16 N -0.501 5.501 17 C 0.044 3.956 18 C -0.063 4.063 19 S -0.282 6.282 20 C -0.055 4.055 21 C 0.059 3.941 22 H 0.084 0.916 23 C 0.528 3.472 24 N -0.834 5.834 25 O -0.560 6.560 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.015 0.985 32 H -0.001 1.001 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.411 0.589 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -3.983 15.509 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.573 4.573 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.257 3.743 14 O -0.459 6.459 15 C -0.099 4.099 16 N -0.224 5.224 17 C -0.085 4.085 18 C -0.211 4.211 19 S -0.054 6.054 20 C -0.204 4.204 21 C -0.054 4.054 22 H 0.102 0.898 23 C 0.310 3.690 24 N -0.397 5.397 25 O -0.439 6.439 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.241 0.759 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.204 -3.103 16.475 16.909 hybrid contribution 0.937 -0.464 -2.369 2.590 sum -1.267 -3.567 14.106 14.605 Atomic orbital electron populations 1.22132 0.94215 1.03577 1.01807 1.21709 0.95614 0.81739 1.03400 1.48358 1.63209 1.14692 1.06508 1.18684 0.95306 0.91490 0.80267 1.21587 0.97614 1.31694 1.06439 0.92813 1.25811 1.02124 0.94543 0.96448 1.70045 1.37772 1.34271 1.14776 0.85526 0.79464 0.78695 0.77494 1.19011 1.20914 1.19487 1.22291 0.77828 0.87074 0.87074 1.90586 1.48039 1.19662 1.87611 1.22671 1.05876 0.96915 0.84424 1.61595 1.01692 1.18172 1.40964 1.22449 0.97409 0.92015 0.96593 1.23574 0.94078 1.04096 0.99360 1.86920 1.06445 1.21213 1.90852 1.23337 1.02458 0.97488 0.97162 1.21940 0.89177 0.95611 0.98695 0.89789 1.20428 0.81162 0.89871 0.77542 1.43834 1.28981 1.15566 1.51346 1.90671 1.70908 1.28357 1.53952 0.93983 0.88763 0.91984 0.91034 0.89316 0.96655 0.98290 0.92550 0.86631 0.85359 0.93164 0.88125 0.85505 0.87630 0.86047 0.88200 0.75940 0.75838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.10 3.01 5.93 86.38 0.51 3.52 16 3 N -0.60 -24.08 2.46 -826.16 -2.03 -26.11 16 4 C 0.26 13.68 5.16 85.63 0.44 14.12 16 5 C -0.53 -29.32 9.39 25.60 0.24 -29.08 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 9 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.47 18.03 6.88 87.66 0.60 18.64 16 14 O -0.58 -26.08 11.58 -3.04 -0.04 -26.11 16 15 C 0.03 0.95 3.79 85.56 0.32 1.27 16 16 N -0.50 -14.06 4.37 -881.18 -3.85 -17.90 16 17 C 0.04 1.14 4.80 86.47 0.41 1.56 16 18 C -0.06 -1.31 6.69 72.07 0.48 -0.83 16 19 S -0.28 -6.93 22.40 -56.49 -1.27 -8.20 16 20 C -0.06 -1.34 5.95 72.06 0.43 -0.91 16 21 C 0.06 1.71 1.63 44.33 0.07 1.78 16 22 H 0.08 2.91 5.81 -2.39 -0.01 2.90 16 23 C 0.53 15.73 5.68 87.65 0.50 16.23 16 24 N -0.83 -21.41 8.87 -173.53 -1.54 -22.95 16 25 O -0.56 -19.00 15.72 -3.02 -0.05 -19.04 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.09 2.33 6.44 -2.39 -0.02 2.31 16 31 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 33 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.12 3.64 4.66 -2.39 -0.01 3.62 16 35 H 0.13 3.09 7.01 -2.38 -0.02 3.07 16 36 H 0.05 1.67 6.08 -2.39 -0.01 1.66 16 37 H 0.10 2.24 7.84 -2.38 -0.02 2.22 16 38 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.10 2.37 8.14 -2.38 -0.02 2.36 16 42 H 0.41 9.98 8.78 -92.71 -0.81 9.17 16 43 H 0.41 9.26 8.93 -92.71 -0.83 8.43 16 Total: -1.00 -70.56 352.44 -1.83 -72.39 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.59 Total: 33.25 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 5.22 Total: 24.16 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -7.13 Total: -121.47 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.08 Total: -45.16 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.27 Total: -8.20 kcal Total: -70.56 -1.83 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271545365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.379 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds