Wall clock time and date at job start Fri Apr 10 2020 18:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39278 * 125.81722 * 2 1 4 4 C 1.38657 * 133.33827 * 0.05623 * 3 2 1 5 5 C 1.38109 * 119.85464 * 179.97438 * 4 3 2 6 6 C 1.38444 * 120.28366 * 0.02562 * 5 4 3 7 7 C 1.38108 * 120.27865 * 359.96124 * 6 5 4 8 8 C 1.38662 * 119.85284 * 0.03788 * 7 6 5 9 9 N 1.39285 * 133.33253 * 180.02562 * 8 7 6 10 10 C 1.46502 * 125.82161 * 359.96121 * 9 8 7 11 11 C 1.50704 * 109.47270 * 89.99659 * 10 9 8 12 12 O 1.21298 * 119.99835 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00185 * 179.72593 * 11 10 9 14 14 C 1.37097 * 119.99726 * 180.27191 * 13 11 10 15 15 H 1.08002 * 119.99275 * 140.12620 * 14 13 11 16 16 C 1.38937 * 120.00597 * 320.12533 * 14 13 11 17 17 N 1.31414 * 120.00418 * 161.49519 * 16 14 13 18 18 Si 1.86801 * 119.99978 * 341.49675 * 16 14 13 19 19 H 1.48506 * 109.46904 * 93.85321 * 18 16 14 20 20 H 1.48502 * 109.47396 * 213.85072 * 18 16 14 21 21 H 1.48495 * 109.47341 * 333.85219 * 18 16 14 22 22 C 1.46494 * 119.99818 * 0.27942 * 13 11 10 23 23 C 1.53000 * 117.50020 * 182.30088 * 22 13 11 24 24 C 1.52997 * 117.50534 * 113.67576 * 22 13 11 25 25 C 1.34638 * 108.36051 * 180.22293 * 9 8 7 26 26 O 1.21689 * 125.16136 * 179.74608 * 25 9 8 27 27 H 1.08998 * 109.46941 * 90.00126 * 1 2 3 28 28 H 1.09005 * 109.47423 * 209.99755 * 1 2 3 29 29 H 1.08997 * 109.47155 * 329.99804 * 1 2 3 30 30 H 1.08000 * 120.07117 * 359.95460 * 4 3 2 31 31 H 1.08000 * 119.86129 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.85854 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.06860 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46883 * 330.00148 * 10 9 8 35 35 H 1.08995 * 109.47158 * 209.99758 * 10 9 8 36 36 H 0.96998 * 120.00281 * 179.97438 * 17 16 14 37 37 H 1.09004 * 115.54788 * 328.00178 * 22 13 11 38 38 H 1.09003 * 117.49849 * 359.97438 * 23 22 13 39 39 H 1.08993 * 117.50368 * 145.01568 * 23 22 13 40 40 H 1.09000 * 117.50170 * 214.97985 * 24 22 13 41 41 H 1.09006 * 117.49478 * 359.97153 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.1294 0.0000 4 6 2.0191 2.4912 0.0010 5 6 3.0662 3.3918 0.0012 6 6 4.3751 2.9407 -0.0001 7 6 4.6448 1.5862 -0.0008 8 6 3.6001 0.6744 -0.0010 9 7 3.5462 -0.7174 -0.0012 10 6 4.7000 -1.6202 -0.0021 11 6 5.0966 -1.9300 1.4185 12 8 4.4767 -1.4440 2.3409 13 7 6.1369 -2.7509 1.6640 14 6 6.4941 -3.0370 2.9563 15 1 6.7953 -4.0391 3.2239 16 6 6.4686 -2.0381 3.9216 17 7 6.4495 -2.3566 5.1964 18 14 6.4613 -0.2423 3.4074 19 1 5.0609 0.2470 3.3376 20 1 7.2171 0.5606 4.4022 21 1 7.1001 -0.1067 2.0737 22 6 6.8860 -3.3372 0.5499 23 6 8.0218 -4.3032 0.8931 24 6 8.3415 -2.9014 0.3701 25 6 2.2529 -1.0918 -0.0064 26 8 1.8564 -2.2422 -0.0123 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 0.9994 2.8468 0.0013 31 1 2.8631 4.4525 0.0024 32 1 5.1886 3.6510 -0.0003 33 1 5.6671 1.2380 -0.0014 34 1 5.5342 -1.1430 -0.5163 35 1 4.4374 -2.5449 -0.5159 36 1 6.4320 -1.6591 5.8704 37 1 6.3066 -3.5408 -0.3507 38 1 8.2119 -4.5021 1.9478 39 1 8.1898 -5.1425 0.2184 40 1 8.7198 -2.8184 -0.6488 41 1 8.7416 -2.1779 1.0805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299325927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:47 Heat of formation + Delta-G solvation = 29.907543 kcal Electronic energy + Delta-G solvation = -27209.362267 eV Core-core repulsion = 23477.510570 eV Total energy + Delta-G solvation = -3731.851697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.57023 -41.01108 -39.38369 -38.21113 -36.98102 -36.61875 -34.95454 -33.56699 -31.60272 -31.36328 -29.50146 -28.04655 -26.27450 -23.73796 -23.45365 -23.37266 -23.03464 -22.04401 -20.97872 -19.29890 -18.99371 -18.50983 -18.17767 -17.47703 -17.32015 -17.10817 -16.42126 -16.05098 -15.74037 -15.39099 -15.20549 -15.06475 -14.99609 -14.89892 -14.68042 -14.39069 -14.01909 -13.60161 -13.47582 -13.39804 -13.08183 -12.96012 -12.46446 -12.22543 -12.09034 -12.03952 -11.90408 -11.74342 -11.61926 -11.47684 -11.26229 -10.79874 -10.52874 -9.52153 -9.35350 -8.83849 -8.47622 -6.23259 0.23153 0.40601 0.98458 1.11444 1.25118 1.47684 1.70523 1.78263 2.13577 2.38944 2.55577 2.78444 2.90713 3.17241 3.46952 3.60633 3.68008 3.94087 4.00898 4.02191 4.05640 4.15694 4.25862 4.30668 4.34294 4.41925 4.44322 4.59242 4.68285 4.83200 4.87944 4.93810 5.06371 5.20096 5.24578 5.44405 5.48326 5.54032 5.61320 5.65790 5.77093 5.79649 6.25534 6.63042 6.77507 7.00954 7.23888 7.71687 8.58961 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.005623 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.075540 B = 4978.233465 C = 5433.151288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.542 5.542 3 C 0.068 3.932 4 C -0.099 4.099 5 C -0.103 4.103 6 C -0.107 4.107 7 C -0.126 4.126 8 C 0.065 3.935 9 N -0.526 5.526 10 C 0.126 3.874 11 C 0.422 3.578 12 O -0.578 6.578 13 N -0.442 5.442 14 C -0.338 4.338 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.912 5.912 18 Si 0.979 3.021 19 H -0.282 1.282 20 H -0.313 1.313 21 H -0.256 1.256 22 C 0.029 3.971 23 C -0.168 4.168 24 C -0.173 4.173 25 C 0.667 3.333 26 O -0.599 6.599 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.163 0.837 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.271 0.729 37 H 0.152 0.848 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 12.955 -18.422 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.264 5.264 3 C -0.032 4.032 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.147 4.147 8 C -0.035 4.035 9 N -0.245 5.245 10 C 0.001 3.999 11 C 0.212 3.788 12 O -0.463 6.463 13 N -0.163 5.163 14 C -0.465 4.465 15 H 0.090 0.910 16 C -0.168 4.168 17 N -0.550 5.550 18 Si 0.810 3.190 19 H -0.210 1.210 20 H -0.244 1.244 21 H -0.181 1.181 22 C -0.075 4.075 23 C -0.205 4.205 24 C -0.212 4.212 25 C 0.370 3.630 26 O -0.479 6.479 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.180 0.820 31 H 0.192 0.808 32 H 0.180 0.820 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.880 12.270 -17.798 22.162 hybrid contribution 0.093 -0.210 0.997 1.024 sum -4.787 12.060 -16.801 21.228 Atomic orbital electron populations 1.22014 0.72804 1.05055 1.04555 1.45093 1.08324 1.03967 1.68978 1.18496 0.87281 0.90380 1.07043 1.20506 1.02386 0.86744 1.02382 1.21354 0.90843 1.01087 0.98973 1.21304 0.98943 0.93187 0.99208 1.20403 0.96877 0.93197 1.04198 1.18530 0.96048 0.82544 1.06369 1.44676 1.05996 1.05619 1.68210 1.21452 0.88103 0.95991 0.94355 1.21395 0.81358 0.83918 0.92140 1.90521 1.54715 1.54290 1.46779 1.43272 1.25481 1.42126 1.05391 1.18685 1.48071 0.96154 0.83589 0.90969 1.26052 0.92590 1.03703 0.94493 1.69837 1.48248 1.35535 1.01384 0.85264 0.76309 0.79708 0.77677 1.21039 1.24363 1.18057 1.22350 0.88904 1.04424 0.91783 1.23157 1.00794 0.94252 1.02331 1.23350 0.96976 0.97509 1.03332 1.16186 0.81283 0.84867 0.80639 1.90941 1.77392 1.18648 1.60910 0.89075 0.91127 0.86919 0.81956 0.80808 0.81995 0.85844 0.83853 0.85329 0.91947 0.83093 0.90709 0.85208 0.84366 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 11.00 127.77 1.41 3.49 16 2 N -0.54 -17.59 3.18 -671.89 -2.14 -19.73 16 3 C 0.07 2.03 6.83 38.40 0.26 2.29 16 4 C -0.10 -1.98 10.02 22.34 0.22 -1.75 16 5 C -0.10 -1.71 10.03 22.29 0.22 -1.49 16 6 C -0.11 -2.17 10.03 22.29 0.22 -1.95 16 7 C -0.13 -3.59 10.02 22.34 0.22 -3.37 16 8 C 0.07 2.23 6.83 38.40 0.26 2.50 16 9 N -0.53 -20.58 2.27 -652.47 -1.48 -22.06 16 10 C 0.13 4.65 5.09 85.63 0.44 5.09 16 11 C 0.42 20.71 5.95 87.66 0.52 21.23 16 12 O -0.58 -34.42 11.32 -3.08 -0.03 -34.45 16 13 N -0.44 -21.33 2.55 -613.15 -1.57 -22.90 16 14 C -0.34 -19.76 8.76 84.04 0.74 -19.02 16 15 H 0.07 4.49 6.96 -2.91 -0.02 4.47 16 16 C 0.04 2.18 4.89 84.92 0.42 2.60 16 17 N -0.91 -59.55 13.96 21.66 0.30 -59.25 16 18 Si 0.98 53.12 24.57 68.60 1.69 54.81 16 19 H -0.28 -16.76 6.11 99.48 0.61 -16.15 16 20 H -0.31 -16.57 7.11 99.48 0.71 -15.87 16 21 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.03 1.00 5.86 44.99 0.26 1.27 16 23 C -0.17 -5.31 9.80 30.59 0.30 -5.01 16 24 C -0.17 -5.05 10.37 30.59 0.32 -4.73 16 25 C 0.67 27.65 8.45 179.14 1.51 29.17 16 26 O -0.60 -28.57 17.48 -4.31 -0.08 -28.65 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.76 8.04 -2.38 -0.02 1.74 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.14 4.07 8.11 -2.39 -0.02 4.05 16 35 H 0.13 4.25 7.45 -2.39 -0.02 4.24 16 36 H 0.27 16.81 8.31 -92.71 -0.77 16.04 16 37 H 0.15 3.95 6.98 -2.38 -0.02 3.94 16 38 H 0.07 2.96 6.49 -2.39 -0.02 2.94 16 39 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -92.91 344.86 4.97 -87.94 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.95 Total: 13.98 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 7.33 Total: 30.32 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -4.89 Total: -123.94 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -0.11 Total: -63.10 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 1.69 Total: 54.81 kcal Total: -92.91 4.97 -87.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299325927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.850 kcal (2) G-P(sol) polarization free energy of solvation -92.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds