Wall clock time and date at job start Fri Apr 10 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47524 * 2 1 4 4 C 1.47199 * 109.47205 * 120.00153 * 2 1 3 5 5 N 2.60802 * 109.47091 * 120.00143 * 2 1 3 6 6 C 1.53001 * 109.47138 * 239.99861 * 2 1 3 7 7 N 1.46501 * 109.46892 * 65.00109 * 6 2 1 8 8 C 1.46506 * 120.00098 * 85.00151 * 7 6 2 9 9 S 1.65599 * 120.00111 * 264.99830 * 7 6 2 10 10 O 1.42099 * 106.40401 * 23.54139 * 9 7 6 11 11 O 1.42103 * 106.40122 * 156.46115 * 9 7 6 12 12 N 1.65600 * 107.21815 * 270.00257 * 9 7 6 13 13 C 1.46505 * 120.00006 * 269.99841 * 12 9 7 14 14 C 1.50694 * 109.47135 * 94.99851 * 13 12 9 15 15 H 1.08004 * 119.99832 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00132 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47601 * 59.99978 * 18 16 14 20 20 H 1.48503 * 109.47387 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47236 * 299.99723 * 18 16 14 22 22 C 1.46494 * 120.00403 * 90.00046 * 12 9 7 23 23 C 1.52998 * 109.47220 * 94.99794 * 22 12 9 24 24 C 1.53007 * 117.49752 * 243.62650 * 23 22 12 25 25 C 1.53005 * 117.49982 * 175.00373 * 23 22 12 26 26 H 1.09001 * 109.47028 * 300.00040 * 1 2 3 27 27 H 1.09000 * 109.47192 * 60.00015 * 1 2 3 28 28 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47188 * 305.00195 * 6 2 1 30 30 H 1.09001 * 109.47155 * 184.99708 * 6 2 1 31 31 H 1.09001 * 109.47060 * 270.00243 * 8 7 6 32 32 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 33 33 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 34 34 H 1.08998 * 109.47285 * 215.00324 * 13 12 9 35 35 H 1.09005 * 109.46574 * 335.00140 * 13 12 9 36 36 H 0.97003 * 120.00103 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47158 * 215.00123 * 22 12 9 38 38 H 1.09001 * 109.46938 * 334.99884 * 22 12 9 39 39 H 1.08994 * 115.55106 * 29.33119 * 23 22 12 40 40 H 1.08997 * 117.49989 * 0.02562 * 24 23 22 41 41 H 1.08996 * 117.49543 * 145.02234 * 24 23 22 42 42 H 1.08994 * 117.49964 * 214.98072 * 25 23 22 43 43 H 1.08998 * 117.49599 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0400 -0.7213 -1.2492 7 7 1.6524 0.0354 -2.4424 8 6 2.4892 1.1427 -2.9115 9 16 0.2685 -0.3610 -3.2609 10 8 -0.5711 -1.0294 -2.3295 11 8 -0.1286 0.8067 -3.9667 12 7 0.6812 -1.4827 -4.4071 13 6 1.0883 -1.0469 -5.7453 14 6 2.5913 -0.9580 -5.8090 15 1 3.1840 -1.2021 -4.9397 16 6 3.2098 -0.5649 -6.9770 17 7 2.4880 -0.2672 -8.0352 18 14 5.0728 -0.4554 -7.0561 19 1 5.6598 -1.7893 -6.7707 20 1 5.4856 -0.0124 -8.4121 21 1 5.5544 0.5232 -6.0483 22 6 0.6391 -2.9107 -4.0832 23 6 -0.7055 -3.4939 -4.5223 24 6 -1.6269 -4.0440 -3.4316 25 6 -0.9018 -5.0043 -4.3767 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 2.1626 2.0698 -2.4404 32 1 3.5293 0.9486 -2.6490 33 1 2.3985 1.2334 -3.9939 34 1 0.7352 -1.7657 -6.4847 35 1 0.6572 -0.0680 -5.9554 36 1 2.9231 0.0089 -8.8570 37 1 1.4460 -3.4255 -4.6046 38 1 0.7588 -3.0430 -3.0079 39 1 -1.1729 -3.0058 -5.3774 40 1 -1.2753 -3.9901 -2.4013 41 1 -2.7008 -3.9177 -3.5691 42 1 -1.4987 -5.5097 -5.1359 43 1 -0.0732 -5.5824 -3.9678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331790237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:54 Heat of formation + Delta-G solvation = -22.599405 kcal Electronic energy + Delta-G solvation = -26012.676679 eV Core-core repulsion = 22413.992061 eV Total energy + Delta-G solvation = -3598.684617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.08454 -37.59111 -36.67590 -35.94966 -35.26651 -34.83332 -32.66549 -32.45769 -27.93431 -27.29388 -25.48112 -25.38329 -22.74101 -22.39915 -22.01717 -20.26671 -18.53695 -17.81351 -17.37788 -16.77988 -16.41815 -15.95386 -15.19021 -15.04383 -14.70433 -14.29424 -14.22255 -14.08012 -13.51371 -13.18025 -13.00663 -12.88383 -12.74554 -12.56987 -12.42011 -12.08607 -12.00241 -11.61783 -11.52481 -11.37968 -11.34517 -11.29416 -11.22208 -11.12959 -11.05425 -10.86040 -10.85791 -10.55241 -10.19749 -10.13101 -9.79351 -9.54751 -8.88885 -8.53934 -8.11601 -6.15740 -4.22855 1.15971 2.64430 2.68920 3.21654 3.27428 3.28864 3.34105 3.78019 4.05218 4.19179 4.31656 4.64487 4.80137 4.87413 5.04715 5.07571 5.17198 5.18468 5.23833 5.28988 5.53371 5.62674 5.66920 5.74928 5.79880 5.86852 5.88948 5.91690 6.12913 6.14521 6.18369 6.32746 6.34939 6.36672 6.48765 6.64773 6.77367 7.30413 7.38603 7.45248 7.59415 7.80907 8.10159 8.82090 9.43446 10.92101 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.006125 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.628941 B = 4570.272885 C = 5938.751633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.019 4.019 3 H 0.118 0.882 4 C 0.220 3.780 5 N -0.441 5.441 6 C 0.137 3.863 7 N -1.004 6.004 8 C 0.093 3.907 9 S 2.780 3.220 10 O -0.985 6.985 11 O -0.975 6.975 12 N -0.988 5.988 13 C 0.244 3.756 14 C -0.541 4.541 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.166 3.834 23 C -0.165 4.165 24 C -0.173 4.173 25 C -0.182 4.182 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -1.747 10.272 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 H 0.135 0.865 4 C -0.098 4.098 5 N -0.117 5.117 6 C 0.009 3.991 7 N -0.841 5.841 8 C -0.052 4.052 9 S 2.789 3.211 10 O -0.969 6.969 11 O -0.959 6.959 12 N -0.828 5.828 13 C 0.122 3.878 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.039 3.961 23 C -0.185 4.185 24 C -0.210 4.210 25 C -0.220 4.220 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.137 -2.094 11.594 12.192 hybrid contribution 1.412 0.143 -0.719 1.591 sum -1.725 -1.952 10.875 11.183 Atomic orbital electron populations 1.21937 0.90793 1.04775 1.02263 1.19452 0.98343 0.99791 0.86691 0.86457 1.29061 0.92943 0.93478 0.94336 1.81208 1.09374 1.09533 1.11572 1.21122 1.01358 0.94339 0.82287 1.57975 1.44833 1.43848 1.37447 1.21546 0.94646 0.87247 1.01774 1.02059 0.73198 0.73384 0.72425 1.93586 1.64333 1.76118 1.62822 1.93590 1.80616 1.48461 1.73221 1.57726 1.83003 1.15430 1.26669 1.19214 0.95118 0.96693 0.76752 1.21502 0.91789 1.46749 0.98013 0.91923 1.24944 0.98266 0.95013 0.95534 1.69919 1.35596 1.44815 1.02260 0.86659 0.85501 0.78501 0.77319 1.20285 1.21237 1.20063 1.20586 0.95204 0.81531 0.98763 1.22862 0.98774 0.95530 1.01309 1.22978 0.98115 1.03846 0.96096 1.22911 1.03328 0.92610 1.03125 0.92298 0.91384 0.89926 0.89508 0.89623 0.93249 0.91443 0.89031 0.94348 0.93211 0.92490 0.89758 0.91752 0.87485 0.88553 0.89429 0.89209 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.58 37.16 0.28 -1.26 16 2 C -0.02 -0.19 2.97 -93.41 -0.28 -0.47 16 3 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.22 2.55 14.65 -20.76 -0.30 2.25 16 5 N -0.44 -6.18 18.54 42.15 0.78 -5.40 16 6 C 0.14 1.55 4.95 -4.04 -0.02 1.53 16 7 N -1.00 -14.24 2.97 -121.75 -0.36 -14.60 16 8 C 0.09 1.29 10.33 59.85 0.62 1.91 16 9 S 2.78 48.77 5.18 -107.50 -0.56 48.22 16 10 O -0.98 -16.36 12.52 -57.17 -0.72 -17.07 16 11 O -0.97 -20.77 15.76 -57.17 -0.90 -21.67 16 12 N -0.99 -18.53 2.82 -115.67 -0.33 -18.86 16 13 C 0.24 5.65 5.43 -5.19 -0.03 5.62 16 14 C -0.54 -13.14 9.17 -34.44 -0.32 -13.46 16 15 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 18 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 22 C 0.17 2.66 5.62 -4.05 -0.02 2.64 16 23 C -0.16 -2.50 6.01 -90.61 -0.54 -3.04 16 24 C -0.17 -2.30 10.18 -26.72 -0.27 -2.58 16 25 C -0.18 -2.28 10.25 -26.72 -0.27 -2.55 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.85 5.77 -51.93 -0.30 0.55 16 28 H 0.08 0.98 7.45 -51.93 -0.39 0.60 16 29 H 0.09 0.96 7.32 -51.93 -0.38 0.58 16 30 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 33 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 34 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.05 1.28 6.91 -51.93 -0.36 0.92 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 38 H 0.06 0.90 7.06 -51.93 -0.37 0.53 16 39 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 40 H 0.10 1.25 8.03 -51.93 -0.42 0.84 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -29.68 369.90 -8.82 -38.50 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.78 Total: 2.04 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.26 Total: -7.83 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.83 Total: -62.40 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.62 Total: -38.75 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 48.77 SS G_CDS: -0.56 Total: 48.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.68 -8.82 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331790237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.898 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds