Wall clock time and date at job start Fri Apr 10 2020 18:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47524 * 2 1 4 4 C 1.47199 * 109.47205 * 120.00153 * 2 1 3 5 5 N 2.60802 * 109.47091 * 120.00143 * 2 1 3 6 6 C 1.53001 * 109.47138 * 239.99861 * 2 1 3 7 7 N 1.46501 * 109.46892 * 65.00109 * 6 2 1 8 8 C 1.46506 * 120.00098 * 85.00151 * 7 6 2 9 9 S 1.65599 * 120.00111 * 264.99830 * 7 6 2 10 10 O 1.42099 * 106.40401 * 23.54139 * 9 7 6 11 11 O 1.42103 * 106.40122 * 156.46115 * 9 7 6 12 12 N 1.65600 * 107.21815 * 270.00257 * 9 7 6 13 13 C 1.46505 * 120.00006 * 269.99841 * 12 9 7 14 14 C 1.50694 * 109.47135 * 94.99851 * 13 12 9 15 15 H 1.08004 * 119.99832 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00132 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47601 * 59.99978 * 18 16 14 20 20 H 1.48503 * 109.47387 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47236 * 299.99723 * 18 16 14 22 22 C 1.46494 * 120.00403 * 90.00046 * 12 9 7 23 23 C 1.52998 * 109.47220 * 94.99794 * 22 12 9 24 24 C 1.53007 * 117.49752 * 243.62650 * 23 22 12 25 25 C 1.53005 * 117.49982 * 175.00373 * 23 22 12 26 26 H 1.09001 * 109.47028 * 300.00040 * 1 2 3 27 27 H 1.09000 * 109.47192 * 60.00015 * 1 2 3 28 28 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47188 * 305.00195 * 6 2 1 30 30 H 1.09001 * 109.47155 * 184.99708 * 6 2 1 31 31 H 1.09001 * 109.47060 * 270.00243 * 8 7 6 32 32 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 33 33 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 34 34 H 1.08998 * 109.47285 * 215.00324 * 13 12 9 35 35 H 1.09005 * 109.46574 * 335.00140 * 13 12 9 36 36 H 0.97003 * 120.00103 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47158 * 215.00123 * 22 12 9 38 38 H 1.09001 * 109.46938 * 334.99884 * 22 12 9 39 39 H 1.08994 * 115.55106 * 29.33119 * 23 22 12 40 40 H 1.08997 * 117.49989 * 0.02562 * 24 23 22 41 41 H 1.08996 * 117.49543 * 145.02234 * 24 23 22 42 42 H 1.08994 * 117.49964 * 214.98072 * 25 23 22 43 43 H 1.08998 * 117.49599 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0400 -0.7213 -1.2492 7 7 1.6524 0.0354 -2.4424 8 6 2.4892 1.1427 -2.9115 9 16 0.2685 -0.3610 -3.2609 10 8 -0.5711 -1.0294 -2.3295 11 8 -0.1286 0.8067 -3.9667 12 7 0.6812 -1.4827 -4.4071 13 6 1.0883 -1.0469 -5.7453 14 6 2.5913 -0.9580 -5.8090 15 1 3.1840 -1.2021 -4.9397 16 6 3.2098 -0.5649 -6.9770 17 7 2.4880 -0.2672 -8.0352 18 14 5.0728 -0.4554 -7.0561 19 1 5.6598 -1.7893 -6.7707 20 1 5.4856 -0.0124 -8.4121 21 1 5.5544 0.5232 -6.0483 22 6 0.6391 -2.9107 -4.0832 23 6 -0.7055 -3.4939 -4.5223 24 6 -1.6269 -4.0440 -3.4316 25 6 -0.9018 -5.0043 -4.3767 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 2.1626 2.0698 -2.4404 32 1 3.5293 0.9486 -2.6490 33 1 2.3985 1.2334 -3.9939 34 1 0.7352 -1.7657 -6.4847 35 1 0.6572 -0.0680 -5.9554 36 1 2.9231 0.0089 -8.8570 37 1 1.4460 -3.4255 -4.6046 38 1 0.7588 -3.0430 -3.0079 39 1 -1.1729 -3.0058 -5.3774 40 1 -1.2753 -3.9901 -2.4013 41 1 -2.7008 -3.9177 -3.5691 42 1 -1.4987 -5.5097 -5.1359 43 1 -0.0732 -5.5824 -3.9678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331790237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:53 Heat of formation + Delta-G solvation = -40.468263 kcal Electronic energy + Delta-G solvation = -26013.451531 eV Core-core repulsion = 22413.992061 eV Total energy + Delta-G solvation = -3599.459469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.08700 -38.81242 -38.11459 -37.00993 -36.72435 -36.34351 -34.29889 -33.65488 -29.61082 -28.29671 -26.99318 -26.44434 -24.35960 -23.52081 -23.07382 -21.50122 -19.84705 -18.89161 -18.71043 -18.40057 -17.89035 -17.36039 -16.59989 -16.11106 -15.96933 -15.64456 -15.35166 -15.22015 -14.89246 -14.36807 -14.22461 -14.04897 -13.94798 -13.89109 -13.69775 -13.44572 -13.17975 -13.08111 -12.93146 -12.85678 -12.83406 -12.48807 -12.46188 -12.29919 -12.25245 -12.24201 -12.08468 -11.84463 -11.80379 -11.69200 -11.17231 -10.70561 -10.51444 -10.01730 -9.68057 -8.10597 -6.24170 -0.22512 1.49118 1.49804 1.57247 1.71478 1.78404 2.04109 2.47478 2.58615 2.99308 3.04011 3.21600 3.51470 3.73776 3.91023 3.94805 4.04177 4.13988 4.21233 4.27312 4.39305 4.48885 4.65356 4.78008 4.84603 4.86378 4.90708 4.92307 5.02335 5.08589 5.13328 5.14668 5.19601 5.35062 5.36636 5.38035 5.44955 5.53899 5.68346 5.82723 6.04864 6.17010 6.55672 6.88523 7.46175 8.97363 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.006125 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.628941 B = 4570.272885 C = 5938.751633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 H 0.147 0.853 4 C 0.247 3.753 5 N -0.482 5.482 6 C 0.128 3.872 7 N -0.998 5.998 8 C 0.088 3.912 9 S 2.790 3.210 10 O -0.977 6.977 11 O -1.018 7.018 12 N -0.995 5.995 13 C 0.262 3.738 14 C -0.535 4.535 15 H 0.076 0.924 16 C 0.012 3.988 17 N -0.931 5.931 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.259 1.259 22 C 0.164 3.836 23 C -0.195 4.195 24 C -0.167 4.167 25 C -0.162 4.162 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 -2.383 12.492 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.164 0.836 4 C -0.071 4.071 5 N -0.159 5.159 6 C 0.001 3.999 7 N -0.837 5.837 8 C -0.056 4.056 9 S 2.800 3.200 10 O -0.960 6.960 11 O -1.002 7.002 12 N -0.833 5.833 13 C 0.138 3.862 14 C -0.575 4.575 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.571 5.571 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.219 1.219 21 H -0.184 1.184 22 C 0.038 3.962 23 C -0.215 4.215 24 C -0.204 4.204 25 C -0.200 4.200 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.686 -2.758 13.846 14.218 hybrid contribution 0.876 0.332 -1.353 1.645 sum -0.810 -2.426 12.493 12.752 Atomic orbital electron populations 1.21938 0.91576 1.04209 1.02439 1.19455 0.97533 1.00968 0.85337 0.83602 1.29114 0.91749 0.92346 0.93851 1.81252 1.10794 1.10913 1.12908 1.21404 1.03038 0.94157 0.81278 1.57656 1.43968 1.44179 1.37880 1.21648 0.96230 0.88139 0.99631 1.01607 0.73798 0.72500 0.72138 1.93591 1.64634 1.75838 1.61977 1.93534 1.81863 1.50302 1.74488 1.57658 1.83224 1.17114 1.25336 1.18677 0.94661 0.94263 0.78581 1.21797 0.92240 1.45269 0.98153 0.90562 1.25791 1.02779 0.94896 0.95282 1.70070 1.37507 1.46547 1.02926 0.85644 0.80077 0.78985 0.77210 1.19478 1.21943 1.18377 1.20751 0.95516 0.79841 1.00117 1.22776 0.99037 0.97856 1.01859 1.23046 0.98148 1.03266 0.95959 1.23022 1.03413 0.90913 1.02627 0.90446 0.92909 0.90913 0.89218 0.87131 0.90925 0.88629 0.92934 0.96833 0.96710 0.92754 0.90458 0.89224 0.89911 0.87854 0.88957 0.88192 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.58 71.98 0.55 -2.27 16 2 C -0.01 -0.16 2.97 -12.60 -0.04 -0.20 16 3 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.25 4.98 14.65 89.44 1.31 6.29 16 5 N -0.48 -12.42 18.54 20.01 0.37 -12.05 16 6 C 0.13 2.47 4.95 86.38 0.43 2.89 16 7 N -1.00 -26.33 2.97 -539.09 -1.60 -27.93 16 8 C 0.09 2.27 10.33 127.77 1.32 3.59 16 9 S 2.79 97.46 5.18 -56.49 -0.29 97.17 16 10 O -0.98 -31.51 12.52 -128.00 -1.60 -33.11 16 11 O -1.02 -44.75 15.76 -128.00 -2.02 -46.76 16 12 N -0.99 -37.85 2.82 -519.87 -1.47 -39.32 16 13 C 0.26 12.66 5.43 85.63 0.47 13.13 16 14 C -0.54 -26.24 9.17 25.60 0.23 -26.00 16 15 H 0.08 3.45 7.81 -2.91 -0.02 3.42 16 16 C 0.01 0.61 5.46 84.66 0.46 1.07 16 17 N -0.93 -52.51 13.29 21.45 0.28 -52.23 16 18 Si 0.96 39.94 29.54 68.60 2.03 41.97 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 C 0.16 5.16 5.62 86.38 0.49 5.64 16 23 C -0.20 -5.90 6.01 -10.79 -0.06 -5.96 16 24 C -0.17 -4.19 10.18 30.60 0.31 -3.88 16 25 C -0.16 -3.77 10.25 30.60 0.31 -3.46 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.23 5.77 -2.39 -0.01 1.21 16 28 H 0.07 1.58 7.45 -2.39 -0.02 1.56 16 29 H 0.09 1.70 7.32 -2.39 -0.02 1.68 16 30 H 0.11 1.65 7.96 -2.39 -0.02 1.64 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.89 7.94 -2.38 -0.02 1.88 16 33 H 0.05 1.79 7.58 -2.39 -0.02 1.77 16 34 H 0.01 0.71 8.11 -2.39 -0.02 0.69 16 35 H 0.01 0.82 6.91 -2.38 -0.02 0.80 16 36 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 38 H 0.09 2.32 7.06 -2.39 -0.02 2.31 16 39 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.10 2.44 8.03 -2.39 -0.02 2.42 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -66.26 369.90 2.47 -63.79 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.00 Total: 17.63 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.77 Total: -9.15 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -2.41 Total: -131.52 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -3.62 Total: -79.88 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 97.46 SS G_CDS: -0.29 Total: 97.17 kcal Total: -66.26 2.47 -63.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331790237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.317 kcal (2) G-P(sol) polarization free energy of solvation -66.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds