Wall clock time and date at job start Fri Apr 10 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30290 * 124.97033 * 2 1 4 4 C 1.34645 * 109.66379 * 180.02562 * 3 2 1 5 5 C 1.40821 * 107.26743 * 0.02562 * 4 3 2 6 6 N 1.32113 * 120.46658 * 179.97438 * 5 4 3 7 7 C 1.31724 * 121.94950 * 359.69093 * 6 5 4 8 8 C 1.38334 * 121.54513 * 0.57735 * 7 6 5 9 9 C 1.39643 * 119.37734 * 359.45686 * 8 7 6 10 10 C 1.47753 * 121.07794 * 180.27261 * 9 8 7 11 11 O 1.21557 * 120.00181 * 226.02974 * 10 9 8 12 12 N 1.34776 * 119.99996 * 46.02535 * 10 9 8 13 13 C 1.46963 * 120.59338 * 5.17075 * 12 10 9 14 14 C 1.53810 * 108.39845 * 124.75638 * 13 12 10 15 15 N 1.46962 * 108.58080 * 49.64010 * 14 13 12 16 16 C 1.36930 * 120.60067 * 124.62665 * 15 14 13 17 17 H 1.07995 * 120.00574 * 212.49300 * 16 15 14 18 18 C 1.38819 * 119.99802 * 32.48669 * 16 15 14 19 19 N 1.31615 * 119.99926 * 13.01503 * 18 16 15 20 20 Si 1.86800 * 119.99833 * 193.00734 * 18 16 15 21 21 H 1.48498 * 109.47331 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47122 * 120.00580 * 20 18 16 23 23 H 1.48502 * 109.46932 * 240.00238 * 20 18 16 24 24 C 1.46971 * 118.80701 * 304.64241 * 15 14 13 25 25 C 1.46970 * 120.59292 * 185.44415 * 12 10 9 26 26 N 1.35986 * 124.97062 * 180.02562 * 2 1 3 27 27 H 0.96994 * 126.35407 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46831 * 269.97467 * 1 2 3 29 29 H 1.09000 * 109.47368 * 29.96863 * 1 2 3 30 30 H 1.08991 * 109.47226 * 149.97322 * 1 2 3 31 31 H 1.07998 * 119.23203 * 180.28505 * 7 6 5 32 32 H 1.07999 * 120.31749 * 179.72775 * 8 7 6 33 33 H 1.08998 * 109.60709 * 244.53779 * 13 12 10 34 34 H 1.08996 * 109.60773 * 5.04743 * 13 12 10 35 35 H 1.09000 * 109.74324 * 289.84818 * 14 13 12 36 36 H 1.09004 * 109.53256 * 169.30017 * 14 13 12 37 37 H 0.96994 * 120.00163 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.60984 * 295.48351 * 24 15 14 39 39 H 1.09005 * 109.60844 * 174.97491 * 24 15 14 40 40 H 1.08997 * 109.61296 * 354.95145 * 25 12 10 41 41 H 1.09000 * 109.60526 * 115.46127 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2538 1.0677 0.0000 4 6 3.5525 0.7122 -0.0006 5 6 3.6007 -0.6952 -0.0015 6 7 4.7616 -1.3257 -0.0028 7 6 5.9076 -0.6761 -0.0092 8 6 5.9559 0.7063 -0.0031 9 6 4.7638 1.4335 -0.0014 10 6 4.7715 2.9110 -0.0009 11 8 4.0448 3.5224 0.7578 12 7 5.5845 3.5808 -0.8417 13 6 6.3846 2.8598 -1.8416 14 6 6.0666 3.4419 -3.2293 15 7 6.1735 4.9059 -3.1587 16 6 7.0000 5.5865 -4.0123 17 1 7.4875 6.4926 -3.6842 18 6 7.2115 5.1116 -5.2995 19 7 6.4356 4.1676 -5.7884 20 14 8.5972 5.8126 -6.3377 21 1 9.3181 6.8543 -5.5629 22 1 9.5410 4.7257 -6.7025 23 1 8.0343 6.4147 -7.5730 24 6 5.3776 5.6265 -2.1551 25 6 5.6912 5.0450 -0.7710 26 7 2.2864 -1.1143 -0.0005 27 1 1.9759 -2.0332 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5142 31 1 6.8311 -1.2360 -0.0146 32 1 6.9067 1.2186 -0.0041 33 1 7.4447 2.9870 -1.6226 34 1 6.1286 1.8005 -1.8201 35 1 5.0547 3.1627 -3.5227 36 1 6.7806 3.0578 -3.9579 37 1 6.5835 3.8355 -6.6876 38 1 4.3166 5.5028 -2.3720 39 1 5.6364 6.6852 -2.1742 40 1 4.9773 5.4291 -0.0425 41 1 6.7032 5.3242 -0.4776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333113524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:07 Heat of formation + Delta-G solvation = 90.209847 kcal Electronic energy + Delta-G solvation = -26370.124644 eV Core-core repulsion = 22673.180603 eV Total energy + Delta-G solvation = -3696.944041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54794 -39.74993 -38.24772 -36.71487 -34.00731 -33.66794 -31.92355 -31.67900 -30.88607 -30.04355 -28.29789 -26.96284 -24.49244 -23.37204 -23.22615 -22.52110 -21.28658 -20.72928 -19.25957 -18.13677 -17.51947 -17.16722 -16.19911 -16.08101 -15.62064 -15.15153 -14.85853 -14.75698 -14.42694 -13.71977 -13.70745 -13.62332 -13.41374 -13.29392 -13.16124 -13.04840 -12.63653 -12.28447 -12.16068 -11.66098 -11.32866 -11.12590 -10.99338 -10.86475 -10.72041 -10.47203 -10.23959 -10.07437 -9.88936 -9.74253 -9.16899 -8.86134 -8.58711 -8.50814 -8.22628 -6.64602 -5.85087 -3.34868 0.43524 1.07327 2.31786 2.60815 3.00993 3.32902 3.33926 3.41335 3.43471 3.78370 3.83067 4.23519 4.43601 4.50033 4.65458 4.79367 4.95549 5.05568 5.15076 5.30585 5.34635 5.35565 5.52223 5.66079 5.79470 5.81905 5.87983 5.90642 6.02114 6.11349 6.21911 6.38063 6.43236 6.46061 6.82910 6.93105 6.95204 7.22620 7.46219 7.65310 7.70878 7.73303 7.87583 8.39195 8.52280 9.13221 9.74161 10.34148 11.22522 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.003632 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.997041 B = 7707.127576 C = 7902.662054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.295 3.705 3 N -0.467 5.467 4 C 0.051 3.949 5 C 0.235 3.765 6 N -0.474 5.474 7 C 0.133 3.867 8 C -0.150 4.150 9 C -0.018 4.018 10 C 0.556 3.444 11 O -0.531 6.531 12 N -0.588 5.588 13 C 0.072 3.928 14 C 0.161 3.839 15 N -0.591 5.591 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.131 3.869 25 C 0.097 3.903 26 N -0.587 5.587 27 H 0.427 0.573 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.097 0.903 37 H 0.255 0.745 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -12.569 11.638 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.028 3.972 3 N -0.187 5.187 4 C -0.072 4.072 5 C -0.001 4.001 6 N -0.188 5.188 7 C -0.033 4.033 8 C -0.173 4.173 9 C -0.031 4.031 10 C 0.342 3.658 11 O -0.408 6.408 12 N -0.320 5.320 13 C -0.052 4.052 14 C 0.035 3.965 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.004 3.996 25 C -0.026 4.026 26 N -0.202 5.202 27 H 0.267 0.733 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.190 0.810 32 H 0.170 0.830 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.485 -12.281 11.848 18.255 hybrid contribution 0.917 -0.239 -0.777 1.225 sum -5.568 -12.520 11.071 17.616 Atomic orbital electron populations 1.20430 0.83367 1.05139 1.04538 1.23862 0.95973 0.80199 0.97151 1.70234 1.00609 1.27182 1.20653 1.19188 0.92159 0.91071 1.04817 1.18852 0.86187 0.90785 1.04324 1.66178 0.96021 1.41455 1.15097 1.22476 0.94185 0.91214 0.95379 1.22234 0.98112 0.95391 1.01576 1.19615 0.90834 0.94318 0.98378 1.17958 0.80460 0.86022 0.81321 1.90759 1.40129 1.68677 1.41252 1.47965 1.42481 1.07991 1.33584 1.23016 0.94714 0.95772 0.91666 1.21204 1.00208 0.84063 0.91054 1.43948 1.48424 1.01146 1.37824 1.19228 1.19355 1.08566 0.91485 0.91554 1.25205 0.98672 0.99144 0.96228 1.69995 1.37567 1.30954 1.16097 0.86192 0.81690 0.78491 0.80201 1.20132 1.21488 1.21621 1.21317 0.94683 0.95919 0.87673 1.22248 1.01416 0.78603 1.00375 1.42695 1.03586 1.10413 1.63521 0.73323 0.88988 0.87974 0.89873 0.80988 0.82970 0.91446 0.90727 0.95876 0.88506 0.93525 0.95746 0.91412 0.89850 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.30 3.54 8.08 -154.72 -1.25 2.29 16 3 N -0.47 -8.00 11.23 -8.07 -0.09 -8.09 16 4 C 0.05 0.88 6.95 -84.62 -0.59 0.29 16 5 C 0.24 3.43 8.46 -155.64 -1.32 2.11 16 6 N -0.47 -6.43 10.35 -12.30 -0.13 -6.55 16 7 C 0.13 1.54 11.14 -17.56 -0.20 1.35 16 8 C -0.15 -1.97 7.55 -39.02 -0.29 -2.27 16 9 C -0.02 -0.32 4.98 -104.45 -0.52 -0.84 16 10 C 0.56 10.95 7.31 -12.37 -0.09 10.86 16 11 O -0.53 -11.95 16.44 5.32 0.09 -11.86 16 12 N -0.59 -11.25 2.94 -173.37 -0.51 -11.76 16 13 C 0.07 1.33 5.43 -3.37 -0.02 1.31 16 14 C 0.16 3.76 5.48 -3.37 -0.02 3.74 16 15 N -0.59 -14.61 2.95 -171.77 -0.51 -15.12 16 16 C -0.26 -6.85 9.55 -15.06 -0.14 -6.99 16 17 H 0.07 1.74 7.86 -52.49 -0.41 1.32 16 18 C 0.01 0.18 4.98 -17.43 -0.09 0.09 16 19 N -0.90 -25.62 11.24 55.49 0.62 -25.00 16 20 Si 0.90 21.07 29.57 -169.99 -5.03 16.04 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 C 0.13 2.83 6.67 -3.60 -0.02 2.81 16 25 C 0.10 1.84 6.60 -3.60 -0.02 1.82 16 26 N -0.59 -6.43 6.23 -9.43 -0.06 -6.49 16 27 H 0.43 2.97 8.96 -40.82 -0.37 2.61 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.15 1.67 7.17 -52.49 -0.38 1.30 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.23 4.90 -51.93 -0.25 0.98 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 2.45 6.18 -51.93 -0.32 2.13 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 40 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -36.16 339.32 -9.71 -45.87 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.02 Total: 1.39 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: -4.19 Total: 16.44 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -0.67 Total: -73.00 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.16 -9.71 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333113524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.084 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds