Wall clock time and date at job start Fri Apr 10 2020 18:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99979 * 2 1 4 4 O 1.20824 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99914 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46974 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99669 * 83.47701 * 6 5 3 8 8 H 1.08003 * 119.99822 * 36.91788 * 7 6 5 9 9 C 1.38955 * 119.99982 * 216.92053 * 7 6 5 10 10 N 1.31413 * 119.99775 * 26.56404 * 9 7 6 11 11 Si 1.86799 * 119.99826 * 206.56525 * 9 7 6 12 12 H 1.48494 * 109.47164 * 89.99681 * 11 9 7 13 13 H 1.48498 * 109.47015 * 209.99763 * 11 9 7 14 14 H 1.48500 * 109.47297 * 329.99648 * 11 9 7 15 15 C 1.34776 * 120.00591 * 263.47416 * 6 5 3 16 16 O 1.21283 * 120.00258 * 183.20407 * 15 6 5 17 17 C 1.50701 * 119.99719 * 3.20386 * 15 6 5 18 18 H 1.09000 * 109.46953 * 317.34900 * 17 15 6 19 19 C 1.53008 * 109.47225 * 77.34530 * 17 15 6 20 20 O 1.42894 * 109.47253 * 197.34611 * 17 15 6 21 21 C 1.42903 * 114.00143 * 149.99779 * 20 17 15 22 22 C 1.52996 * 109.47037 * 180.02562 * 21 20 17 23 23 H 1.08994 * 110.27815 * 54.29893 * 22 21 20 24 24 C 1.54949 * 110.31031 * 176.39417 * 22 21 20 25 25 C 1.55417 * 100.89638 * 155.28662 * 24 22 21 26 26 C 1.54388 * 102.30609 * 325.99111 * 25 24 22 27 27 O 1.43235 * 107.59092 * 21.28336 * 26 25 24 28 28 H 1.08995 * 109.46853 * 60.00017 * 1 2 3 29 29 H 1.08991 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47050 * 300.00619 * 1 2 3 31 31 H 1.08996 * 109.47487 * 299.99770 * 5 3 2 32 32 H 1.09005 * 109.46985 * 60.00221 * 5 3 2 33 33 H 0.97004 * 119.99368 * 184.93032 * 10 9 7 34 34 H 1.08998 * 109.47125 * 179.13204 * 19 17 15 35 35 H 1.08999 * 109.46970 * 299.13768 * 19 17 15 36 36 H 1.08998 * 109.46339 * 59.13282 * 19 17 15 37 37 H 1.08996 * 109.46966 * 300.00289 * 21 20 17 38 38 H 1.09003 * 109.46963 * 60.00435 * 21 20 17 39 39 H 1.09001 * 111.12180 * 273.28062 * 24 22 21 40 40 H 1.09002 * 111.12633 * 37.43540 * 24 22 21 41 41 H 1.09000 * 110.88359 * 207.75426 * 25 24 22 42 42 H 1.08999 * 110.93186 * 84.24952 * 25 24 22 43 43 H 1.08994 * 109.82522 * 261.76781 * 26 25 24 44 44 H 1.08997 * 109.90068 * 140.84044 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.0462 3.3761 1.1791 8 1 4.3824 2.8834 2.0795 9 6 3.6790 4.7158 1.2159 10 7 2.8154 5.1845 0.3434 11 14 4.4131 5.8503 2.5056 12 1 5.6577 6.4626 1.9755 13 1 3.4375 6.9197 2.8371 14 1 4.7275 5.0704 3.7296 15 6 4.3005 3.2878 -1.1600 16 8 4.7000 4.4329 -1.1546 17 6 4.1606 2.5446 -2.4635 18 1 4.5348 1.5279 -2.3441 19 6 2.6861 2.5009 -2.8700 20 8 4.9143 3.2137 -3.4765 21 6 5.4211 2.3459 -4.4925 22 6 6.2076 3.1654 -5.5175 23 1 6.9793 3.7525 -5.0198 24 6 6.8424 2.2324 -6.5792 25 6 6.9883 3.2092 -7.7792 26 6 5.7505 4.1175 -7.6164 27 8 5.3228 4.0260 -6.2525 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.9558 0.7810 0.8908 32 1 3.9564 0.7806 -0.8892 33 1 2.6130 6.1330 0.3228 34 1 2.5867 1.9768 -3.8205 35 1 2.1136 1.9771 -2.1045 36 1 2.3079 3.5178 -2.9744 37 1 6.0781 1.6026 -4.0408 38 1 4.5908 1.8434 -4.9886 39 1 7.8143 1.8655 -6.2489 40 1 6.1756 1.4060 -6.8251 41 1 6.9519 2.6700 -8.7258 42 1 7.9079 3.7889 -7.6999 43 1 4.9533 3.7780 -8.2775 44 1 6.0132 5.1485 -7.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348801967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:21 Heat of formation + Delta-G solvation = -181.195395 kcal Electronic energy + Delta-G solvation = -28038.068303 eV Core-core repulsion = 23957.460825 eV Total energy + Delta-G solvation = -4080.607478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91896 -39.50197 -38.54092 -36.82372 -35.67868 -33.93863 -32.32610 -32.11823 -31.11192 -29.70485 -28.39796 -26.26979 -25.49629 -24.90666 -22.70361 -21.73967 -21.22684 -20.73846 -19.20295 -17.21746 -16.97929 -16.88744 -16.34971 -16.08408 -15.79863 -15.77810 -15.27573 -14.98371 -14.58545 -14.36517 -13.98197 -13.50596 -13.40126 -13.25316 -12.97218 -12.76248 -12.33517 -11.97249 -11.90439 -11.85244 -11.71357 -11.63675 -11.38546 -11.31890 -11.16340 -11.08083 -10.96402 -10.75609 -10.50882 -10.46749 -10.16105 -10.11921 -9.66718 -9.43948 -9.28236 -8.70757 -8.04296 -7.18254 -6.01499 -3.75783 3.02622 3.18905 3.41281 3.48271 3.52322 3.68913 3.86612 4.25343 4.32615 4.44624 4.68223 4.78720 4.99083 5.10571 5.18751 5.24958 5.35737 5.36790 5.41902 5.44970 5.49437 5.51504 5.52049 5.54145 5.62402 5.65402 5.73828 5.78498 5.81147 5.84914 5.90670 6.04515 6.09927 6.20714 6.29707 6.82447 7.01496 7.08075 7.54765 7.70407 8.23858 8.58245 9.00778 9.17503 9.64736 10.22545 11.04565 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.004380 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.118303 B = 6391.067754 C = 8009.491455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.379 6.379 3 C 0.418 3.582 4 O -0.451 6.451 5 C 0.110 3.890 6 N -0.433 5.433 7 C -0.363 4.363 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.799 5.799 11 Si 0.903 3.097 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.487 3.513 16 O -0.503 6.503 17 C 0.073 3.927 18 H 0.062 0.938 19 C -0.161 4.161 20 O -0.345 6.345 21 C 0.060 3.940 22 C 0.085 3.915 23 H 0.081 0.919 24 C -0.149 4.149 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.366 6.366 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -12.337 -12.014 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.297 6.297 3 C 0.257 3.743 4 O -0.332 6.332 5 C -0.017 4.017 6 N -0.158 5.158 7 C -0.489 4.489 8 H 0.102 0.898 9 C -0.132 4.132 10 N -0.430 5.430 11 Si 0.730 3.270 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.200 1.200 15 C 0.273 3.727 16 O -0.377 6.377 17 C 0.012 3.988 18 H 0.080 0.920 19 C -0.219 4.219 20 O -0.263 6.263 21 C -0.017 4.017 22 C 0.027 3.973 23 H 0.099 0.901 24 C -0.187 4.187 25 C -0.192 4.192 26 C -0.030 4.030 27 O -0.285 6.285 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.300 -10.905 -11.973 16.528 hybrid contribution -0.078 0.156 0.389 0.426 sum 3.222 -10.750 -11.584 16.128 Atomic orbital electron populations 1.23060 0.78200 1.02364 1.02149 1.86551 1.22197 1.35484 1.85489 1.25372 0.93586 0.81359 0.74029 1.90816 1.65963 1.35434 1.41018 1.21449 0.86286 0.89947 1.04025 1.43191 1.58355 1.07436 1.06773 1.18942 1.47997 0.94441 0.87472 0.89845 1.25069 0.92633 0.98565 0.96912 1.70053 1.24097 1.13919 1.34900 0.86368 0.79417 0.80430 0.80816 1.20273 1.21534 1.19957 1.19425 0.82302 0.87794 0.83158 1.90543 1.45264 1.16804 1.85131 1.22088 0.92327 0.95081 0.89314 0.92003 1.22167 0.95311 1.03935 1.00463 1.88138 1.70584 1.32579 1.35003 1.22671 0.97061 0.92581 0.89429 1.22988 0.91874 0.90696 0.91710 0.90133 1.23268 1.02032 0.98469 0.94920 1.23124 0.99175 0.97805 0.99123 1.23122 0.95728 0.99492 0.84649 1.88594 1.51808 1.68169 1.19939 0.92583 0.89152 0.92426 0.87827 0.88866 0.92720 0.93126 0.91643 0.90866 0.92316 0.92998 0.89544 0.90143 0.90083 0.90440 0.91570 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.38 -6.29 10.57 -39.27 -0.41 -6.71 16 3 C 0.42 8.45 6.04 36.01 0.22 8.67 16 4 O -0.45 -11.16 15.06 -18.75 -0.28 -11.44 16 5 C 0.11 2.11 5.63 -5.19 -0.03 2.08 16 6 N -0.43 -10.88 2.10 -116.09 -0.24 -11.13 16 7 C -0.36 -10.10 9.08 -14.93 -0.14 -10.23 16 8 H 0.08 2.19 7.96 -52.48 -0.42 1.78 16 9 C 0.08 2.39 4.10 -17.47 -0.07 2.32 16 10 N -0.80 -24.79 11.81 55.50 0.66 -24.14 16 11 Si 0.90 22.66 29.63 -169.99 -5.04 17.62 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.49 12.81 6.24 -10.99 -0.07 12.75 16 16 O -0.50 -15.65 14.15 -13.73 -0.19 -15.85 16 17 C 0.07 1.53 2.36 -27.88 -0.07 1.47 16 18 H 0.06 1.05 5.98 -51.93 -0.31 0.74 16 19 C -0.16 -3.24 9.43 37.16 0.35 -2.89 16 20 O -0.35 -7.33 9.58 -57.33 -0.55 -7.88 16 21 C 0.06 0.91 5.45 37.16 0.20 1.11 16 22 C 0.08 1.18 3.72 -25.70 -0.10 1.08 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 24 C -0.15 -1.39 6.58 -24.42 -0.16 -1.55 16 25 C -0.15 -1.31 7.02 -24.72 -0.17 -1.48 16 26 C 0.05 0.52 7.80 37.88 0.30 0.82 16 27 O -0.37 -5.88 11.04 -35.96 -0.40 -6.28 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 32 H 0.09 1.46 5.78 -51.93 -0.30 1.16 16 33 H 0.26 7.92 8.32 -40.82 -0.34 7.58 16 34 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 35 H 0.06 1.33 4.34 -51.93 -0.23 1.10 16 36 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.05 0.72 7.85 -51.93 -0.41 0.32 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -38.61 362.99 -6.35 -44.96 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.69 Total: -0.34 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 1.33 Total: 15.72 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.41 Total: -35.27 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.84 Total: -48.15 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.04 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.61 -6.35 -44.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.237 kcal (2) G-P(sol) polarization free energy of solvation -38.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds