Wall clock time and date at job start Fri Apr 10 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99979 * 2 1 4 4 O 1.20824 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99914 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46974 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99669 * 83.47701 * 6 5 3 8 8 H 1.08003 * 119.99822 * 36.91788 * 7 6 5 9 9 C 1.38955 * 119.99982 * 216.92053 * 7 6 5 10 10 N 1.31413 * 119.99775 * 26.56404 * 9 7 6 11 11 Si 1.86799 * 119.99826 * 206.56525 * 9 7 6 12 12 H 1.48494 * 109.47164 * 89.99681 * 11 9 7 13 13 H 1.48498 * 109.47015 * 209.99763 * 11 9 7 14 14 H 1.48500 * 109.47297 * 329.99648 * 11 9 7 15 15 C 1.34776 * 120.00591 * 263.47416 * 6 5 3 16 16 O 1.21283 * 120.00258 * 183.20407 * 15 6 5 17 17 C 1.50701 * 119.99719 * 3.20386 * 15 6 5 18 18 H 1.09000 * 109.46953 * 317.34900 * 17 15 6 19 19 C 1.53008 * 109.47225 * 77.34530 * 17 15 6 20 20 O 1.42894 * 109.47253 * 197.34611 * 17 15 6 21 21 C 1.42903 * 114.00143 * 149.99779 * 20 17 15 22 22 C 1.52996 * 109.47037 * 180.02562 * 21 20 17 23 23 H 1.08994 * 110.27815 * 54.29893 * 22 21 20 24 24 C 1.54949 * 110.31031 * 176.39417 * 22 21 20 25 25 C 1.55417 * 100.89638 * 155.28662 * 24 22 21 26 26 C 1.54388 * 102.30609 * 325.99111 * 25 24 22 27 27 O 1.43235 * 107.59092 * 21.28336 * 26 25 24 28 28 H 1.08995 * 109.46853 * 60.00017 * 1 2 3 29 29 H 1.08991 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47050 * 300.00619 * 1 2 3 31 31 H 1.08996 * 109.47487 * 299.99770 * 5 3 2 32 32 H 1.09005 * 109.46985 * 60.00221 * 5 3 2 33 33 H 0.97004 * 119.99368 * 184.93032 * 10 9 7 34 34 H 1.08998 * 109.47125 * 179.13204 * 19 17 15 35 35 H 1.08999 * 109.46970 * 299.13768 * 19 17 15 36 36 H 1.08998 * 109.46339 * 59.13282 * 19 17 15 37 37 H 1.08996 * 109.46966 * 300.00289 * 21 20 17 38 38 H 1.09003 * 109.46963 * 60.00435 * 21 20 17 39 39 H 1.09001 * 111.12180 * 273.28062 * 24 22 21 40 40 H 1.09002 * 111.12633 * 37.43540 * 24 22 21 41 41 H 1.09000 * 110.88359 * 207.75426 * 25 24 22 42 42 H 1.08999 * 110.93186 * 84.24952 * 25 24 22 43 43 H 1.08994 * 109.82522 * 261.76781 * 26 25 24 44 44 H 1.08997 * 109.90068 * 140.84044 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.0462 3.3761 1.1791 8 1 4.3824 2.8834 2.0795 9 6 3.6790 4.7158 1.2159 10 7 2.8154 5.1845 0.3434 11 14 4.4131 5.8503 2.5056 12 1 5.6577 6.4626 1.9755 13 1 3.4375 6.9197 2.8371 14 1 4.7275 5.0704 3.7296 15 6 4.3005 3.2878 -1.1600 16 8 4.7000 4.4329 -1.1546 17 6 4.1606 2.5446 -2.4635 18 1 4.5348 1.5279 -2.3441 19 6 2.6861 2.5009 -2.8700 20 8 4.9143 3.2137 -3.4765 21 6 5.4211 2.3459 -4.4925 22 6 6.2076 3.1654 -5.5175 23 1 6.9793 3.7525 -5.0198 24 6 6.8424 2.2324 -6.5792 25 6 6.9883 3.2092 -7.7792 26 6 5.7505 4.1175 -7.6164 27 8 5.3228 4.0260 -6.2525 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.9558 0.7810 0.8908 32 1 3.9564 0.7806 -0.8892 33 1 2.6130 6.1330 0.3228 34 1 2.5867 1.9768 -3.8205 35 1 2.1136 1.9771 -2.1045 36 1 2.3079 3.5178 -2.9744 37 1 6.0781 1.6026 -4.0408 38 1 4.5908 1.8434 -4.9886 39 1 7.8143 1.8655 -6.2489 40 1 6.1756 1.4060 -6.8251 41 1 6.9519 2.6700 -8.7258 42 1 7.9079 3.7889 -7.6999 43 1 4.9533 3.7780 -8.2775 44 1 6.0132 5.1485 -7.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348801967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:20 Heat of formation + Delta-G solvation = -209.062541 kcal Electronic energy + Delta-G solvation = -28039.276713 eV Core-core repulsion = 23957.460825 eV Total energy + Delta-G solvation = -4081.815888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53267 -40.60075 -40.14582 -38.38328 -37.27381 -35.90760 -34.14539 -33.17022 -32.55056 -30.98632 -29.93466 -27.75235 -26.96594 -26.36231 -24.42655 -22.56126 -22.33737 -22.20070 -21.01695 -18.82439 -18.55882 -18.15871 -17.94780 -17.58145 -17.22155 -17.02901 -16.66827 -16.48553 -16.18822 -15.85462 -15.58205 -14.97198 -14.85589 -14.51145 -14.24656 -14.06535 -13.96175 -13.64522 -13.39014 -13.14204 -13.00317 -12.92999 -12.84465 -12.76073 -12.63119 -12.56406 -12.30847 -12.14726 -12.08415 -11.98948 -11.65595 -11.57969 -11.37653 -10.86049 -10.65269 -10.46999 -10.02756 -9.25634 -8.17187 -5.91847 1.37472 1.45906 1.47016 1.50769 1.71147 2.26955 2.40547 2.55460 2.90117 3.22163 3.32763 3.56823 3.72160 3.89946 3.94881 3.99407 4.10880 4.16642 4.19743 4.28225 4.35692 4.39584 4.41334 4.43112 4.49080 4.54789 4.58368 4.63766 4.74992 4.77217 4.82838 4.89600 4.99277 5.02641 5.16586 5.26210 5.48904 5.54879 6.03374 6.14040 6.32162 6.95324 7.04584 7.19869 7.59562 8.25155 8.88568 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.004380 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.118303 B = 6391.067754 C = 8009.491455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.427 3.573 4 O -0.505 6.505 5 C 0.104 3.896 6 N -0.446 5.446 7 C -0.371 4.371 8 H 0.097 0.903 9 C 0.028 3.972 10 N -0.843 5.843 11 Si 0.958 3.042 12 H -0.292 1.292 13 H -0.291 1.291 14 H -0.246 1.246 15 C 0.470 3.530 16 O -0.569 6.569 17 C 0.084 3.916 18 H 0.111 0.889 19 C -0.149 4.149 20 O -0.386 6.386 21 C 0.051 3.949 22 C 0.073 3.927 23 H 0.059 0.941 24 C -0.136 4.136 25 C -0.146 4.146 26 C 0.034 3.966 27 O -0.410 6.410 28 H 0.051 0.949 29 H 0.138 0.862 30 H 0.047 0.953 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -16.323 -12.915 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.268 3.732 4 O -0.391 6.391 5 C -0.021 4.021 6 N -0.169 5.169 7 C -0.497 4.497 8 H 0.114 0.886 9 C -0.181 4.181 10 N -0.476 5.476 11 Si 0.784 3.216 12 H -0.219 1.219 13 H -0.218 1.218 14 H -0.170 1.170 15 C 0.259 3.741 16 O -0.448 6.448 17 C 0.023 3.977 18 H 0.128 0.872 19 C -0.207 4.207 20 O -0.305 6.305 21 C -0.025 4.025 22 C 0.016 3.984 23 H 0.077 0.923 24 C -0.173 4.173 25 C -0.183 4.183 26 C -0.042 4.042 27 O -0.331 6.331 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.273 -14.985 -12.850 20.197 hybrid contribution -0.408 1.240 0.610 1.441 sum 3.864 -13.744 -12.240 18.806 Atomic orbital electron populations 1.23403 0.76091 1.05251 1.01541 1.86507 1.24011 1.33013 1.84609 1.25278 0.93875 0.81434 0.72592 1.90830 1.67123 1.37410 1.43709 1.21690 0.86104 0.86694 1.07647 1.43278 1.58280 1.09380 1.05943 1.19348 1.46647 0.94977 0.88737 0.88574 1.25936 0.93016 1.00443 0.98672 1.70203 1.26501 1.13085 1.37847 0.85495 0.77700 0.78832 0.79597 1.21903 1.21756 1.16957 1.20500 0.80848 0.87577 0.85219 1.90491 1.48042 1.19796 1.86459 1.21929 0.92851 0.96145 0.86797 0.87170 1.22061 0.94753 1.01459 1.02422 1.88117 1.70898 1.35318 1.36197 1.23071 0.98199 0.92744 0.88525 1.23152 0.91217 0.91366 0.92650 0.92321 1.23260 1.02929 0.97910 0.93210 1.23132 0.97818 0.97251 1.00140 1.23376 0.97614 1.00410 0.82799 1.88550 1.53091 1.69124 1.22319 0.92977 0.84399 0.93447 0.84791 0.84540 0.94024 0.89128 0.91840 0.95619 0.89198 0.91468 0.87395 0.88584 0.87297 0.89945 0.90443 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.36 -10.95 10.57 -51.45 -0.54 -11.50 16 3 C 0.43 16.52 6.04 71.24 0.43 16.95 16 4 O -0.50 -25.19 15.06 21.97 0.33 -24.86 16 5 C 0.10 3.71 5.63 85.63 0.48 4.19 16 6 N -0.45 -22.26 2.10 -639.59 -1.35 -23.60 16 7 C -0.37 -20.76 9.08 84.04 0.76 -20.00 16 8 H 0.10 4.97 7.96 -2.91 -0.02 4.95 16 9 C 0.03 1.68 4.10 84.93 0.35 2.03 16 10 N -0.84 -55.11 11.81 21.66 0.26 -54.85 16 11 Si 0.96 48.00 29.63 68.60 2.03 50.03 16 12 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 13 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 14 H -0.25 -11.03 7.11 99.48 0.71 -10.33 16 15 C 0.47 25.14 6.24 87.66 0.55 25.69 16 16 O -0.57 -37.13 14.15 15.40 0.22 -36.91 16 17 C 0.08 3.42 2.36 29.85 0.07 3.49 16 18 H 0.11 3.31 5.98 -2.39 -0.01 3.29 16 19 C -0.15 -5.94 9.43 71.98 0.68 -5.26 16 20 O -0.39 -16.43 9.58 -127.85 -1.22 -17.65 16 21 C 0.05 1.44 5.45 71.98 0.39 1.83 16 22 C 0.07 1.98 3.72 31.26 0.12 2.10 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 C -0.14 -2.09 6.58 32.09 0.21 -1.88 16 25 C -0.15 -2.07 7.02 31.90 0.22 -1.84 16 26 C 0.03 0.73 7.80 72.45 0.56 1.30 16 27 O -0.41 -13.32 11.04 -148.28 -1.64 -14.96 16 28 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.14 2.09 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.28 8.13 -2.38 -0.02 1.26 16 31 H 0.13 3.99 8.09 -2.39 -0.02 3.97 16 32 H 0.14 3.63 5.78 -2.38 -0.01 3.62 16 33 H 0.25 16.16 8.32 -92.71 -0.77 15.39 16 34 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 35 H 0.06 2.52 4.34 -2.39 -0.01 2.51 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 38 H 0.07 1.67 7.85 -2.39 -0.02 1.65 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.21 8.06 -2.39 -0.02 1.19 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -92.59 362.99 5.11 -87.48 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.00 Total: 16.27 kcal Atomic # 6 Polarization: 24.52 SS G_CDS: 6.03 Total: 30.55 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.09 Total: -78.46 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -2.86 Total: -105.87 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -92.59 5.11 -87.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.580 kcal (2) G-P(sol) polarization free energy of solvation -92.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds