Wall clock time and date at job start Fri Apr 10 2020 18:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00269 * 179.72947 * 3 2 1 6 6 N 1.46497 * 109.47630 * 180.27467 * 5 3 2 7 7 C 1.37103 * 120.00078 * 89.99335 * 6 5 3 8 8 H 1.07998 * 119.99959 * 170.13062 * 7 6 5 9 9 C 1.38952 * 120.00099 * 350.13988 * 7 6 5 10 10 N 1.31410 * 119.99552 * 336.31179 * 9 7 6 11 11 Si 1.86800 * 120.00172 * 156.30911 * 9 7 6 12 12 H 1.48500 * 109.46908 * 90.00038 * 11 9 7 13 13 H 1.48492 * 109.46952 * 209.99818 * 11 9 7 14 14 H 1.48498 * 109.46916 * 330.00100 * 11 9 7 15 15 C 1.34772 * 119.99982 * 269.99723 * 6 5 3 16 16 O 1.21288 * 119.99978 * 4.81315 * 15 6 5 17 17 C 1.50701 * 120.00146 * 184.80561 * 15 6 5 18 18 H 1.09001 * 109.46818 * 47.77396 * 17 15 6 19 19 C 1.52996 * 109.47368 * 287.77594 * 17 15 6 20 20 O 1.42900 * 109.47062 * 167.77086 * 17 15 6 21 21 C 1.42905 * 113.99914 * 210.00434 * 20 17 15 22 22 C 1.52995 * 109.47081 * 180.02562 * 21 20 17 23 23 H 1.08997 * 110.27895 * 54.29891 * 22 21 20 24 24 C 1.54947 * 110.31214 * 176.39228 * 22 21 20 25 25 C 1.55407 * 100.89563 * 155.28438 * 24 22 21 26 26 C 1.54374 * 102.31263 * 325.99067 * 25 24 22 27 27 O 1.43242 * 107.58908 * 21.28262 * 26 25 24 28 28 H 1.08997 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46417 * 300.00055 * 1 2 3 30 30 H 1.08997 * 109.47117 * 59.99963 * 1 2 3 31 31 H 1.09006 * 109.46953 * 300.27528 * 5 3 2 32 32 H 1.09001 * 109.47408 * 60.27167 * 5 3 2 33 33 H 0.97005 * 119.99790 * 176.41888 * 10 9 7 34 34 H 1.09001 * 109.46821 * 294.96872 * 19 17 15 35 35 H 1.08998 * 109.47656 * 54.97446 * 19 17 15 36 36 H 1.08998 * 109.47149 * 174.97330 * 19 17 15 37 37 H 1.09003 * 109.46985 * 300.00325 * 21 20 17 38 38 H 1.09007 * 109.46936 * 59.99911 * 21 20 17 39 39 H 1.09002 * 111.12234 * 273.27784 * 24 22 21 40 40 H 1.09004 * 111.12460 * 37.43706 * 24 22 21 41 41 H 1.09000 * 110.88538 * 207.74926 * 25 24 22 42 42 H 1.09003 * 110.93334 * 84.25430 * 25 24 22 43 43 H 1.09008 * 109.83229 * 261.77297 * 26 25 24 44 44 H 1.09002 * 109.90906 * 140.83651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0062 6 7 3.9818 2.6797 0.0115 7 6 4.1713 3.3340 1.2014 8 1 4.6279 4.3126 1.2127 9 6 3.7762 2.7379 2.3927 10 7 2.8393 1.8164 2.3872 11 14 4.5769 3.2462 4.0020 12 1 3.8143 4.3711 4.6006 13 1 4.5782 2.0947 4.9396 14 1 5.9746 3.6770 3.7451 15 6 4.1775 3.3290 -1.1532 16 8 3.9262 2.7782 -2.2042 17 6 4.7086 4.7393 -1.1497 18 1 5.5730 4.8003 -0.4884 19 6 3.6196 5.6932 -0.6548 20 8 5.0963 5.1056 -2.4754 21 6 6.1697 6.0475 -2.5278 22 6 6.4983 6.3655 -3.9878 23 1 5.6022 6.6951 -4.5135 24 6 7.5989 7.4534 -4.0668 25 6 8.2092 7.1529 -5.4640 26 6 8.0794 5.6174 -5.5567 27 8 7.0604 5.2127 -4.6348 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9526 0.7784 0.8964 32 1 3.9597 0.7831 -0.8835 33 1 2.5999 1.3633 3.2108 34 1 2.7920 5.6989 -1.3641 35 1 3.2609 5.3611 0.3194 36 1 4.0300 6.6991 -0.5672 37 1 5.8753 6.9628 -2.0142 38 1 7.0485 5.6243 -2.0410 39 1 7.1661 8.4532 -4.0321 40 1 8.3399 7.3205 -3.2784 41 1 9.2551 7.4570 -5.5048 42 1 7.6348 7.6391 -6.2526 43 1 9.0269 5.1494 -5.2894 44 1 7.7974 5.3292 -6.5694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348801972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:28 Heat of formation + Delta-G solvation = -193.368730 kcal Electronic energy + Delta-G solvation = -27748.162119 eV Core-core repulsion = 23667.026766 eV Total energy + Delta-G solvation = -4081.135353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60826 -39.36848 -38.52065 -36.85298 -35.27072 -34.53259 -32.25484 -31.77408 -31.36073 -29.89983 -28.18663 -26.18510 -25.47289 -24.89103 -22.80000 -21.74194 -21.21064 -20.23995 -19.16492 -17.44944 -17.04149 -16.69588 -16.42860 -15.86092 -15.59929 -15.35840 -15.07238 -15.02820 -14.56358 -14.27150 -14.16395 -13.67357 -13.33192 -13.20554 -12.86684 -12.46031 -12.36388 -12.15044 -11.87572 -11.78479 -11.71082 -11.49640 -11.37307 -11.29094 -11.17859 -11.07689 -10.88432 -10.76801 -10.57926 -10.44878 -10.36888 -9.73733 -9.50674 -9.42178 -9.23740 -8.95346 -8.32916 -8.00361 -6.53585 -3.97169 3.05926 3.17213 3.20263 3.49776 3.69398 3.78379 3.83767 4.08852 4.10895 4.33634 4.64555 4.74787 4.93182 4.98241 5.11228 5.24158 5.35012 5.45835 5.52459 5.55552 5.63519 5.68969 5.74480 5.75969 5.83954 5.85773 5.88820 5.92438 6.02325 6.08114 6.25287 6.35762 6.40482 6.53806 6.68909 6.91417 7.10683 7.28218 7.48115 7.61087 7.68317 8.21662 8.96158 9.20298 9.36727 9.77806 10.53634 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003772 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.417276 B = 7420.553245 C = 8612.972857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.501 6.501 5 C 0.159 3.841 6 N -0.431 5.431 7 C -0.335 4.335 8 H 0.107 0.893 9 C 0.039 3.961 10 N -0.865 5.865 11 Si 0.920 3.080 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.473 3.527 16 O -0.578 6.578 17 C 0.091 3.909 18 H 0.076 0.924 19 C -0.167 4.167 20 O -0.354 6.354 21 C 0.062 3.938 22 C 0.085 3.915 23 H 0.078 0.922 24 C -0.150 4.150 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.364 6.364 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.273 0.727 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 6.866 -5.878 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.385 6.385 5 C 0.033 3.967 6 N -0.152 5.152 7 C -0.462 4.462 8 H 0.124 0.876 9 C -0.166 4.166 10 N -0.504 5.504 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.261 3.739 16 O -0.461 6.461 17 C 0.030 3.970 18 H 0.094 0.906 19 C -0.225 4.225 20 O -0.272 6.272 21 C -0.016 4.016 22 C 0.028 3.972 23 H 0.096 0.904 24 C -0.187 4.187 25 C -0.192 4.192 26 C -0.030 4.030 27 O -0.283 6.283 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.836 6.520 -6.378 11.399 hybrid contribution 0.138 0.652 1.283 1.446 sum 6.974 7.173 -5.095 11.227 Atomic orbital electron populations 1.22910 0.78875 1.01671 1.01566 1.86455 1.21552 1.35604 1.85763 1.23899 0.92200 0.80554 0.70479 1.90503 1.66446 1.36361 1.45240 1.20554 0.87375 0.85217 1.03566 1.43402 1.58107 1.08461 1.05229 1.19646 1.39635 1.04420 0.82463 0.87579 1.25122 0.94638 0.97234 0.99596 1.69848 1.24521 1.26676 1.29316 0.86060 0.79780 0.78359 0.81252 1.20370 1.20620 1.19335 1.19835 0.83109 0.87109 0.83803 1.90570 1.55890 1.68240 1.31448 1.21672 0.97743 0.93708 0.83856 0.90586 1.22221 0.98839 0.97557 1.03903 1.88071 1.51300 1.61489 1.26318 1.22646 0.90815 0.93093 0.95031 1.22977 0.96052 0.85298 0.92895 0.90398 1.23270 0.98261 0.99523 0.97678 1.23121 1.02121 0.96510 0.97473 1.23128 0.92133 0.93792 0.93979 1.88622 1.52926 1.29908 1.56867 0.89730 0.92672 0.93235 0.85930 0.89949 0.91645 0.92119 0.88777 0.93171 0.92340 0.92828 0.89625 0.90054 0.90079 0.90519 0.91508 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.38 10.57 -39.25 -0.41 -8.79 16 3 C 0.49 12.42 5.98 36.00 0.22 12.63 16 4 O -0.50 -14.21 15.85 -18.75 -0.30 -14.50 16 5 C 0.16 3.89 5.22 -5.20 -0.03 3.87 16 6 N -0.43 -10.96 2.11 -116.10 -0.25 -11.20 16 7 C -0.33 -8.20 7.96 -14.93 -0.12 -8.32 16 8 H 0.11 2.41 5.40 -52.49 -0.28 2.12 16 9 C 0.04 0.94 4.91 -17.47 -0.09 0.85 16 10 N -0.87 -22.02 8.87 55.50 0.49 -21.52 16 11 Si 0.92 18.70 29.62 -169.99 -5.03 13.67 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 13 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 15 C 0.47 12.15 6.99 -10.99 -0.08 12.07 16 16 O -0.58 -16.65 16.17 -14.06 -0.23 -16.87 16 17 C 0.09 1.93 2.29 -27.88 -0.06 1.87 16 18 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 19 C -0.17 -3.26 9.16 37.16 0.34 -2.92 16 20 O -0.35 -7.42 9.55 -57.59 -0.55 -7.97 16 21 C 0.06 0.95 5.45 37.16 0.20 1.15 16 22 C 0.09 1.18 3.72 -25.71 -0.10 1.08 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 24 C -0.15 -1.41 6.58 -24.43 -0.16 -1.57 16 25 C -0.15 -1.31 7.02 -24.73 -0.17 -1.48 16 26 C 0.05 0.52 7.80 37.88 0.30 0.82 16 27 O -0.36 -5.92 11.04 -35.96 -0.40 -6.32 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 30 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.12 2.94 6.36 -51.93 -0.33 2.61 16 32 H 0.08 1.93 7.49 -51.93 -0.39 1.54 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.99 5.98 -51.93 -0.31 1.68 16 36 H 0.05 0.78 7.99 -51.93 -0.41 0.37 16 37 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 38 H 0.05 0.80 8.09 -51.92 -0.42 0.38 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -34.04 362.76 -6.59 -40.63 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.70 Total: 5.50 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 1.32 Total: 21.92 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.25 Total: -32.73 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -1.89 Total: -54.46 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.04 -6.59 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.737 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds