Wall clock time and date at job start Fri Apr 10 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34947 * 126.03704 * 2 1 4 4 C 1.35315 * 107.74759 * 180.14738 * 3 2 1 5 5 C 1.50696 * 126.04011 * 179.87846 * 4 3 2 6 6 H 1.08997 * 109.47031 * 339.71157 * 5 4 3 7 7 C 1.52995 * 109.47508 * 99.71766 * 5 4 3 8 8 O 1.42902 * 109.46902 * 54.99723 * 7 5 4 9 9 N 1.46510 * 109.47009 * 219.71747 * 5 4 3 10 10 C 1.34776 * 120.00145 * 154.99809 * 9 5 4 11 11 O 1.21589 * 119.99752 * 359.97438 * 10 9 5 12 12 C 1.47632 * 120.00001 * 179.97438 * 10 9 5 13 13 C 1.40013 * 119.89936 * 359.72848 * 12 10 9 14 14 C 1.36311 * 120.11108 * 179.71487 * 13 12 10 15 15 C 1.40888 * 119.88748 * 0.57898 * 14 13 12 16 16 C 1.41114 * 120.10122 * 179.67280 * 15 14 13 17 17 H 1.07998 * 119.99888 * 204.65181 * 16 15 14 18 18 C 1.40227 * 119.99915 * 24.65541 * 16 15 14 19 19 N 1.30643 * 120.00148 * 17.86255 * 18 16 15 20 20 Si 1.86798 * 119.99948 * 197.86232 * 18 16 15 21 21 H 1.48497 * 109.47086 * 89.99909 * 20 18 16 22 22 H 1.48503 * 109.47328 * 209.99820 * 20 18 16 23 23 H 1.48504 * 109.47304 * 330.00248 * 20 18 16 24 24 C 1.40885 * 119.79686 * 359.69382 * 15 14 13 25 25 C 1.36310 * 119.89082 * 0.02562 * 24 15 14 26 26 C 1.39874 * 107.91837 * 359.61344 * 4 3 2 27 27 N 1.30835 * 108.20161 * 0.24108 * 26 4 3 28 28 H 1.09003 * 109.47054 * 270.25391 * 1 2 3 29 29 H 1.08996 * 109.47195 * 30.25844 * 1 2 3 30 30 H 1.09005 * 109.46875 * 150.25851 * 1 2 3 31 31 H 1.07999 * 126.12921 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47313 * 174.99850 * 7 5 4 33 33 H 1.08998 * 109.46761 * 295.00030 * 7 5 4 34 34 H 0.96710 * 113.99530 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99842 * 335.27182 * 9 5 4 36 36 H 1.08003 * 119.94184 * 0.02562 * 13 12 10 37 37 H 1.07999 * 120.05784 * 180.25553 * 14 13 12 38 38 H 0.97006 * 120.00106 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.05485 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.94748 * 179.97438 * 25 24 15 41 41 H 1.07994 * 125.89443 * 180.25588 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5453 -0.0071 6 1 4.5000 2.5401 -0.3632 7 6 5.3282 1.6457 1.4130 8 8 5.5706 0.3331 1.9233 9 7 5.7818 0.9665 -0.8923 10 6 6.7160 1.7581 -1.4554 11 8 6.7170 2.9528 -1.2292 12 6 7.7379 1.1747 -2.3469 13 6 7.7382 -0.2021 -2.6014 14 6 8.6762 -0.7445 -3.4284 15 6 9.6541 0.0810 -4.0178 16 6 10.6315 -0.4768 -4.8692 17 1 11.5801 0.0221 -5.0020 18 6 10.3710 -1.6788 -5.5428 19 7 9.1418 -2.1019 -5.6724 20 14 11.7816 -2.6750 -6.2549 21 1 12.2695 -3.6399 -5.2370 22 1 11.3097 -3.4153 -7.4526 23 1 12.8871 -1.7618 -6.6412 24 6 9.6533 1.4650 -3.7542 25 6 8.7077 1.9991 -2.9304 26 6 3.5347 -0.7321 0.0036 27 7 2.2892 -1.1327 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.9282 2.1193 0.0004 32 1 6.2623 2.2072 1.3963 33 1 4.6083 2.1568 2.0522 34 1 5.9271 0.3202 2.8222 35 1 5.7783 0.0141 -1.0762 36 1 6.9908 -0.8347 -2.1456 37 1 8.6731 -1.8060 -3.6274 38 1 8.9616 -2.9336 -6.1381 39 1 10.4012 2.1016 -4.2035 40 1 8.7066 3.0598 -2.7274 41 1 4.4054 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351486145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:32 Heat of formation + Delta-G solvation = 11.151734 kcal Electronic energy + Delta-G solvation = -25253.740619 eV Core-core repulsion = 21521.075610 eV Total energy + Delta-G solvation = -3732.665010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28981 -39.11871 -37.34965 -36.55437 -34.40913 -33.82614 -32.96755 -31.12010 -29.90173 -29.39023 -28.26331 -26.50878 -25.76383 -23.03157 -21.80185 -21.16393 -20.90709 -19.95628 -19.28693 -17.55763 -17.44656 -17.20138 -16.30980 -15.67994 -15.46543 -15.22390 -14.71661 -14.37818 -14.17405 -13.94191 -13.55807 -13.41201 -13.16970 -13.08599 -12.81084 -12.75385 -12.44202 -12.24581 -11.99223 -11.88602 -11.52159 -11.31839 -11.25245 -10.91895 -10.61410 -10.55356 -10.00550 -9.90667 -9.51427 -9.43243 -9.31467 -8.95285 -8.59309 -8.36740 -7.66995 -7.49675 -6.99458 -4.56229 1.82498 2.27924 2.45101 2.79353 2.94701 2.98651 3.00732 3.08606 3.77060 3.88466 3.92090 4.38686 4.43956 4.62046 4.75263 4.90269 4.97349 5.15120 5.25212 5.36122 5.51261 5.56232 5.63046 5.71600 5.86986 6.01753 6.12708 6.26855 6.36222 6.63004 6.81357 6.86767 6.90323 7.01504 7.12826 7.18433 7.48254 7.67517 7.70392 7.73513 7.85185 7.90719 8.11566 8.33083 8.44559 8.67414 8.79961 9.13287 9.92523 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.003006 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.052757 B = 9311.778335 C =10208.392404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.059 3.941 4 C -0.232 4.232 5 C 0.231 3.769 6 H 0.099 0.901 7 C 0.071 3.929 8 O -0.562 6.562 9 N -0.725 5.725 10 C 0.574 3.426 11 O -0.581 6.581 12 C -0.283 4.283 13 C -0.061 4.061 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.259 1.259 24 C -0.240 4.240 25 C -0.022 4.022 26 C 0.080 3.920 27 N -0.302 5.302 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.372 0.628 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 1.576 10.506 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.087 4.087 4 C -0.244 4.244 5 C 0.124 3.876 6 H 0.117 0.883 7 C -0.008 4.008 8 O -0.367 6.367 9 N -0.377 5.377 10 C 0.369 3.631 11 O -0.464 6.464 12 C -0.287 4.287 13 C -0.080 4.080 14 C -0.198 4.198 15 C 0.126 3.874 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.260 4.260 25 C -0.041 4.041 26 C -0.106 4.106 27 N -0.123 5.123 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.054 1.049 9.948 17.251 hybrid contribution 1.148 -0.061 0.105 1.154 sum -12.906 0.988 10.053 16.389 Atomic orbital electron populations 1.21804 0.74451 1.04403 1.03079 1.48415 1.06480 1.03896 1.57503 1.22216 0.90664 0.93393 1.02465 1.19990 0.93696 0.94385 1.16300 1.18970 0.84347 0.96113 0.88195 0.88315 1.22615 0.99214 0.84420 0.94548 1.86506 1.87426 1.28042 1.34697 1.45845 1.30726 1.11858 1.49262 1.18582 0.80341 0.85557 0.78629 1.90614 1.75372 1.15718 1.64670 1.18893 1.03474 0.94332 1.12012 1.20488 0.97346 0.93094 0.97049 1.20975 0.98563 1.00033 1.00185 1.17786 0.90631 0.90677 0.88354 1.19847 1.01579 1.04469 1.21259 0.89750 1.26092 0.96595 0.97224 0.94775 1.69747 1.20406 1.19592 1.29719 0.86216 0.81379 0.79877 0.78824 1.18944 1.20061 1.18320 1.20711 1.03045 0.94956 1.07240 1.20351 0.92665 0.97621 0.93499 1.23660 0.94858 0.94449 0.97648 1.77380 1.01736 1.07973 1.25196 0.91007 0.89627 0.89377 0.80988 0.92828 0.93720 0.78202 0.76523 0.89296 0.86221 0.90258 0.88452 0.88151 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.47 59.85 0.69 1.38 16 2 N -0.38 -4.37 4.01 -68.16 -0.27 -4.64 16 3 C 0.06 0.66 11.40 -17.22 -0.20 0.46 16 4 C -0.23 -3.09 4.84 -105.05 -0.51 -3.59 16 5 C 0.23 3.34 2.80 -69.08 -0.19 3.14 16 6 H 0.10 1.47 7.57 -51.93 -0.39 1.08 16 7 C 0.07 0.92 6.84 37.16 0.25 1.17 16 8 O -0.56 -7.00 12.53 -35.23 -0.44 -7.44 16 9 N -0.72 -12.53 4.96 -55.94 -0.28 -12.80 16 10 C 0.57 12.18 7.73 -12.43 -0.10 12.08 16 11 O -0.58 -13.43 15.99 5.29 0.08 -13.34 16 12 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 13 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 14 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 15 C 0.13 3.31 5.58 -106.80 -0.60 2.72 16 16 C -0.44 -11.15 9.04 -37.74 -0.34 -11.49 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.73 10.95 55.56 0.61 -18.12 16 20 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 24 C -0.24 -5.86 9.73 -39.28 -0.38 -6.25 16 25 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 26 C 0.08 1.13 10.49 -17.36 -0.18 0.95 16 27 N -0.30 -4.33 12.58 30.62 0.39 -3.94 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.37 3.08 9.12 45.56 0.42 3.49 16 35 H 0.40 6.62 5.63 -40.82 -0.23 6.39 16 36 H 0.09 1.75 6.37 -52.48 -0.33 1.42 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 38 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 39 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 40 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 41 H 0.18 2.43 7.72 -52.49 -0.41 2.02 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -31.91 353.73 -7.15 -39.05 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -4.18 Total: 15.76 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.35 Total: -12.31 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.44 Total: -39.51 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.36 Total: -20.78 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.91 -7.15 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351486145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.204 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds