Wall clock time and date at job start Fri Apr 10 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34947 * 126.03704 * 2 1 4 4 C 1.35315 * 107.74759 * 180.14738 * 3 2 1 5 5 C 1.50696 * 126.04011 * 179.87846 * 4 3 2 6 6 H 1.08997 * 109.47031 * 339.71157 * 5 4 3 7 7 C 1.52995 * 109.47508 * 99.71766 * 5 4 3 8 8 O 1.42902 * 109.46902 * 54.99723 * 7 5 4 9 9 N 1.46510 * 109.47009 * 219.71747 * 5 4 3 10 10 C 1.34776 * 120.00145 * 154.99809 * 9 5 4 11 11 O 1.21589 * 119.99752 * 359.97438 * 10 9 5 12 12 C 1.47632 * 120.00001 * 179.97438 * 10 9 5 13 13 C 1.40013 * 119.89936 * 359.72848 * 12 10 9 14 14 C 1.36311 * 120.11108 * 179.71487 * 13 12 10 15 15 C 1.40888 * 119.88748 * 0.57898 * 14 13 12 16 16 C 1.41114 * 120.10122 * 179.67280 * 15 14 13 17 17 H 1.07998 * 119.99888 * 204.65181 * 16 15 14 18 18 C 1.40227 * 119.99915 * 24.65541 * 16 15 14 19 19 N 1.30643 * 120.00148 * 17.86255 * 18 16 15 20 20 Si 1.86798 * 119.99948 * 197.86232 * 18 16 15 21 21 H 1.48497 * 109.47086 * 89.99909 * 20 18 16 22 22 H 1.48503 * 109.47328 * 209.99820 * 20 18 16 23 23 H 1.48504 * 109.47304 * 330.00248 * 20 18 16 24 24 C 1.40885 * 119.79686 * 359.69382 * 15 14 13 25 25 C 1.36310 * 119.89082 * 0.02562 * 24 15 14 26 26 C 1.39874 * 107.91837 * 359.61344 * 4 3 2 27 27 N 1.30835 * 108.20161 * 0.24108 * 26 4 3 28 28 H 1.09003 * 109.47054 * 270.25391 * 1 2 3 29 29 H 1.08996 * 109.47195 * 30.25844 * 1 2 3 30 30 H 1.09005 * 109.46875 * 150.25851 * 1 2 3 31 31 H 1.07999 * 126.12921 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47313 * 174.99850 * 7 5 4 33 33 H 1.08998 * 109.46761 * 295.00030 * 7 5 4 34 34 H 0.96710 * 113.99530 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99842 * 335.27182 * 9 5 4 36 36 H 1.08003 * 119.94184 * 0.02562 * 13 12 10 37 37 H 1.07999 * 120.05784 * 180.25553 * 14 13 12 38 38 H 0.97006 * 120.00106 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.05485 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.94748 * 179.97438 * 25 24 15 41 41 H 1.07994 * 125.89443 * 180.25588 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5453 -0.0071 6 1 4.5000 2.5401 -0.3632 7 6 5.3282 1.6457 1.4130 8 8 5.5706 0.3331 1.9233 9 7 5.7818 0.9665 -0.8923 10 6 6.7160 1.7581 -1.4554 11 8 6.7170 2.9528 -1.2292 12 6 7.7379 1.1747 -2.3469 13 6 7.7382 -0.2021 -2.6014 14 6 8.6762 -0.7445 -3.4284 15 6 9.6541 0.0810 -4.0178 16 6 10.6315 -0.4768 -4.8692 17 1 11.5801 0.0221 -5.0020 18 6 10.3710 -1.6788 -5.5428 19 7 9.1418 -2.1019 -5.6724 20 14 11.7816 -2.6750 -6.2549 21 1 12.2695 -3.6399 -5.2370 22 1 11.3097 -3.4153 -7.4526 23 1 12.8871 -1.7618 -6.6412 24 6 9.6533 1.4650 -3.7542 25 6 8.7077 1.9991 -2.9304 26 6 3.5347 -0.7321 0.0036 27 7 2.2892 -1.1327 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.9282 2.1193 0.0004 32 1 6.2623 2.2072 1.3963 33 1 4.6083 2.1568 2.0522 34 1 5.9271 0.3202 2.8222 35 1 5.7783 0.0141 -1.0762 36 1 6.9908 -0.8347 -2.1456 37 1 8.6731 -1.8060 -3.6274 38 1 8.9616 -2.9336 -6.1381 39 1 10.4012 2.1016 -4.2035 40 1 8.7066 3.0598 -2.7274 41 1 4.4054 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351486145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:32 Heat of formation + Delta-G solvation = -11.319151 kcal Electronic energy + Delta-G solvation = -25254.715030 eV Core-core repulsion = 21521.075610 eV Total energy + Delta-G solvation = -3733.639420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23753 -40.72061 -39.00411 -37.81265 -35.64350 -35.63115 -33.90649 -32.53728 -31.41871 -31.23456 -29.34844 -27.52900 -27.30135 -24.36790 -23.25051 -22.73673 -22.21301 -21.11362 -20.73922 -19.34424 -18.78419 -18.23302 -17.58532 -17.21534 -16.69204 -16.28073 -15.97743 -15.73114 -15.61363 -15.29203 -15.04293 -14.87641 -14.45966 -14.30127 -14.07655 -13.87890 -13.65153 -13.54037 -13.30855 -13.18749 -13.12683 -12.85133 -12.60920 -12.52066 -12.35509 -11.74711 -11.54095 -11.33989 -11.11067 -10.94286 -10.61025 -10.34505 -10.02242 -9.54825 -9.39451 -9.33261 -8.77397 -6.46263 0.47684 0.93778 1.17596 1.39431 1.44546 1.53946 1.69243 1.76958 2.15475 2.19901 2.52267 2.81770 3.47023 3.61335 3.72108 4.01615 4.13132 4.27184 4.32893 4.34071 4.38245 4.47014 4.47941 4.54134 4.64601 4.71787 4.77689 4.92934 4.95757 5.04590 5.09803 5.18990 5.32508 5.59897 5.63649 5.68219 5.85771 5.97860 6.02221 6.14687 6.24944 6.56435 6.72867 6.76351 6.79573 6.91526 6.96483 7.49312 8.17752 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.003006 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.052757 B = 9311.778335 C =10208.392404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.378 5.378 3 C 0.074 3.926 4 C -0.253 4.253 5 C 0.229 3.771 6 H 0.097 0.903 7 C 0.078 3.922 8 O -0.575 6.575 9 N -0.711 5.711 10 C 0.575 3.425 11 O -0.602 6.602 12 C -0.291 4.291 13 C -0.054 4.054 14 C -0.198 4.198 15 C 0.102 3.898 16 C -0.475 4.475 17 H 0.086 0.914 18 C 0.037 3.963 19 N -0.800 5.800 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.257 1.257 24 C -0.254 4.254 25 C -0.031 4.031 26 C 0.067 3.933 27 N -0.335 5.335 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.211 0.789 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.390 0.610 35 H 0.402 0.598 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.296 0.704 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 1.469 11.099 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.160 5.160 3 C -0.074 4.074 4 C -0.265 4.265 5 C 0.123 3.877 6 H 0.114 0.886 7 C -0.001 4.001 8 O -0.382 6.382 9 N -0.362 5.362 10 C 0.369 3.631 11 O -0.487 6.487 12 C -0.296 4.296 13 C -0.073 4.073 14 C -0.218 4.218 15 C 0.099 3.901 16 C -0.502 4.502 17 H 0.104 0.896 18 C -0.182 4.182 19 N -0.423 5.423 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.180 1.180 24 C -0.273 4.273 25 C -0.050 4.050 26 C -0.118 4.118 27 N -0.157 5.157 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.239 0.761 35 H 0.238 0.762 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.535 0.921 10.580 18.818 hybrid contribution 1.417 0.011 -0.001 1.417 sum -14.118 0.932 10.579 17.667 Atomic orbital electron populations 1.22208 0.71804 1.05912 1.04713 1.48802 1.07972 1.03220 1.55986 1.22763 0.89838 0.94848 0.99943 1.19898 0.94109 0.93831 1.18669 1.19131 0.84164 0.96004 0.88374 0.88563 1.22481 0.98853 0.84595 0.94186 1.86467 1.87656 1.27795 1.36307 1.45768 1.30146 1.11646 1.48591 1.18307 0.80739 0.85424 0.78661 1.90596 1.76064 1.16527 1.65491 1.19213 1.03816 0.94533 1.12022 1.20698 0.97139 0.93354 0.96113 1.20994 0.99643 0.99679 1.01456 1.18129 0.91465 0.91378 0.89173 1.20111 1.01738 1.06067 1.22283 0.89632 1.26934 0.99133 0.97518 0.94584 1.69775 1.22217 1.20259 1.30058 0.85105 0.77795 0.78089 0.78238 1.18391 1.19000 1.18014 1.20868 1.03700 0.94895 1.07838 1.20511 0.92848 0.98102 0.93557 1.23678 0.94948 0.94993 0.98203 1.77314 1.02142 1.09787 1.26443 0.89292 0.86630 0.89427 0.77212 0.94881 0.90866 0.76115 0.76166 0.86604 0.87067 0.89281 0.87691 0.87586 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.42 16 2 N -0.38 -7.71 4.01 -369.55 -1.48 -9.19 16 3 C 0.07 1.43 11.40 83.54 0.95 2.38 16 4 C -0.25 -6.29 4.84 -20.14 -0.10 -6.39 16 5 C 0.23 6.31 2.80 44.24 0.12 6.43 16 6 H 0.10 2.71 7.57 -2.39 -0.02 2.69 16 7 C 0.08 1.89 6.84 71.98 0.49 2.38 16 8 O -0.58 -13.52 12.53 -148.98 -1.87 -15.39 16 9 N -0.71 -24.10 4.96 -449.17 -2.23 -26.32 16 10 C 0.58 24.29 7.73 86.72 0.67 24.96 16 11 O -0.60 -27.71 15.99 -4.00 -0.06 -27.77 16 12 C -0.29 -13.56 5.89 -19.93 -0.12 -13.68 16 13 C -0.05 -2.47 9.47 22.25 0.21 -2.26 16 14 C -0.20 -10.11 8.64 22.47 0.19 -9.91 16 15 C 0.10 5.39 5.58 -21.28 -0.12 5.27 16 16 C -0.47 -24.38 9.04 23.46 0.21 -24.16 16 17 H 0.09 4.21 7.91 -2.91 -0.02 4.18 16 18 C 0.04 1.76 5.14 85.35 0.44 2.20 16 19 N -0.80 -39.17 10.95 21.87 0.24 -38.93 16 20 Si 0.99 35.53 29.60 68.60 2.03 37.56 16 21 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 22 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 23 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 24 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 25 C -0.03 -1.50 9.52 22.25 0.21 -1.29 16 26 C 0.07 1.85 10.49 85.24 0.89 2.74 16 27 N -0.33 -9.22 12.58 -57.02 -0.72 -9.94 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.39 5.85 9.12 -74.05 -0.68 5.17 16 35 H 0.40 13.12 5.63 -92.71 -0.52 12.60 16 36 H 0.12 4.53 6.37 -2.91 -0.02 4.51 16 37 H 0.11 5.77 6.16 -2.91 -0.02 5.76 16 38 H 0.30 12.93 8.29 -92.70 -0.77 12.16 16 39 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.11 4.92 7.63 -2.91 -0.02 4.90 16 41 H 0.18 4.74 7.72 -2.91 -0.02 4.72 16 Total: -1.00 -69.87 353.73 1.55 -68.32 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.11 Total: 43.10 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.75 Total: -21.43 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -4.19 Total: -84.38 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.93 Total: -43.16 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -69.87 1.55 -68.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351486145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.002 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds