Wall clock time and date at job start Fri Apr 10 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46684 * 265.00741 * 3 2 1 5 5 H 1.48505 * 109.46861 * 25.00269 * 3 2 1 6 6 H 1.48493 * 109.47134 * 145.00470 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99656 * 6.44677 * 7 2 1 9 9 C 1.50696 * 120.00223 * 186.45342 * 7 2 1 10 10 H 1.09003 * 109.47047 * 334.61243 * 9 7 2 11 11 C 1.52999 * 109.47101 * 214.61651 * 9 7 2 12 12 C 1.50708 * 109.46897 * 65.36618 * 11 9 7 13 13 O 1.21278 * 119.99938 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99463 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99604 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47311 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.47222 * 180.02562 * 16 15 14 18 18 N 1.28883 * 125.45274 * 89.99992 * 17 16 15 19 19 C 1.31036 * 107.91737 * 179.97438 * 18 17 16 20 20 N 1.33317 * 106.90062 * 359.97438 * 19 18 17 21 21 N 1.28780 * 125.44645 * 269.69228 * 17 16 15 22 22 C 1.50699 * 109.47567 * 94.61357 * 9 7 2 23 23 C 1.38239 * 119.99702 * 56.36087 * 22 9 7 24 24 C 1.38233 * 120.00118 * 179.79156 * 23 22 9 25 25 C 1.38235 * 119.99726 * 0.43578 * 24 23 22 26 26 C 1.38238 * 120.00024 * 359.81410 * 25 24 23 27 27 C 1.38231 * 120.00229 * 359.97438 * 26 25 24 28 28 H 0.97002 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47221 * 305.37018 * 11 9 7 30 30 H 1.08995 * 109.47399 * 185.36165 * 11 9 7 31 31 H 0.96997 * 120.00650 * 0.02562 * 14 12 11 32 32 H 1.08999 * 109.47387 * 59.99936 * 15 14 12 33 33 H 1.09001 * 109.47622 * 300.00085 * 15 14 12 34 34 H 1.09004 * 109.47167 * 299.99874 * 16 15 14 35 35 H 1.09002 * 109.47488 * 59.99854 * 16 15 14 36 36 H 1.07996 * 126.55129 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.99881 * 359.97438 * 23 22 9 38 38 H 1.07994 * 120.00274 * 180.27544 * 24 23 22 39 39 H 1.07998 * 120.00218 * 179.84197 * 25 24 23 40 40 H 1.07999 * 119.99940 * 180.02562 * 26 25 24 41 41 H 1.07996 * 120.00234 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6021 1.9855 -1.3948 5 1 1.3977 2.6809 0.5918 6 1 3.4899 1.4730 0.8029 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1264 -0.1041 9 6 3.5044 -1.1981 0.1472 10 1 3.9063 -0.2475 -0.2035 11 6 4.0950 -2.3391 -0.6836 12 6 3.8459 -2.0762 -2.1466 13 8 3.2539 -1.0752 -2.4906 14 7 4.2802 -2.9542 -3.0723 15 6 4.0377 -2.6991 -4.4944 16 6 4.6272 -3.8405 -5.3252 17 7 4.3852 -3.5851 -6.7473 18 7 5.1736 -2.9383 -7.5354 19 6 4.6245 -2.9150 -8.7249 20 7 3.4695 -3.5741 -8.6316 21 7 3.3532 -3.9757 -7.4112 22 6 3.8669 -1.3925 1.5970 23 6 3.4000 -2.4975 2.2840 24 6 3.7360 -2.6782 3.6126 25 6 4.5315 -1.7492 4.2568 26 6 4.9942 -0.6415 3.5712 27 6 4.6617 -0.4631 2.2414 28 1 -0.4850 0.8401 -0.0004 29 1 3.6226 -3.2789 -0.3978 30 1 5.1681 -2.4021 -0.5034 31 1 4.7527 -3.7554 -2.7971 32 1 4.5099 -1.7594 -4.7807 33 1 2.9645 -2.6359 -4.6744 34 1 5.7005 -3.9041 -5.1454 35 1 4.1546 -4.7801 -5.0389 36 1 5.0302 -2.4507 -9.6116 37 1 2.7751 -3.2212 1.7818 38 1 3.3749 -3.5437 4.1481 39 1 4.7920 -1.8889 5.2955 40 1 5.6160 0.0841 4.0744 41 1 5.0228 0.4025 1.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356387144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:35 Heat of formation + Delta-G solvation = 121.340807 kcal Electronic energy + Delta-G solvation = -25083.469586 eV Core-core repulsion = 21387.875484 eV Total energy + Delta-G solvation = -3695.594102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.55822 -39.43154 -38.46910 -36.35637 -34.36934 -33.93288 -33.23186 -31.73151 -30.32732 -30.19870 -28.82652 -26.23349 -24.58714 -24.17660 -22.69990 -22.28287 -21.88214 -20.49806 -19.34683 -18.00954 -17.50544 -16.99859 -16.56493 -16.01999 -15.94081 -15.59549 -15.16087 -14.65323 -14.38119 -14.10228 -13.90136 -13.76611 -13.28005 -12.83452 -12.77753 -12.59145 -12.52221 -12.33040 -12.11346 -11.90223 -11.66164 -11.20496 -11.20069 -11.10663 -10.80682 -10.64275 -10.57451 -10.39415 -9.93789 -9.64845 -9.31283 -9.09548 -8.93184 -8.43530 -8.23782 -7.85812 -6.02267 -3.99657 0.97574 1.56756 2.01306 2.06696 2.11452 3.27673 3.39599 3.42995 3.46812 3.50181 3.80777 4.13724 4.16250 4.48966 4.54864 4.56935 4.64376 5.21532 5.33098 5.42097 5.45177 5.49080 5.52468 5.57664 5.65072 5.66427 5.85125 5.89926 5.91864 6.03512 6.20591 6.28161 6.49621 6.54655 6.65199 6.79238 6.95508 7.11442 7.23087 7.52998 7.67894 7.75163 7.78555 8.12878 8.48082 8.78909 8.96683 9.62746 11.10498 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.003041 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.640906 B = 9204.705337 C =10087.535318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.086 3.914 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.071 0.929 9 C 0.056 3.944 10 H 0.049 0.951 11 C -0.115 4.115 12 C 0.517 3.483 13 O -0.493 6.493 14 N -0.746 5.746 15 C 0.109 3.891 16 C 0.119 3.881 17 N -0.134 5.134 18 N -0.308 5.308 19 C 0.142 3.858 20 N -0.288 5.288 21 N -0.054 5.054 22 C -0.039 4.039 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.126 4.126 27 C -0.136 4.136 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.236 0.764 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 -9.059 -6.208 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.037 3.963 10 H 0.067 0.933 11 C -0.156 4.156 12 C 0.304 3.696 13 O -0.364 6.364 14 N -0.404 5.404 15 C -0.017 4.017 16 C -0.002 4.002 17 N -0.047 5.047 18 N -0.158 5.158 19 C -0.161 4.161 20 N -0.159 5.159 21 N -0.048 5.048 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.144 4.144 27 C -0.154 4.154 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.252 0.748 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.291 -8.495 -6.065 16.899 hybrid contribution 0.837 0.932 -0.212 1.270 sum 14.128 -7.563 -6.277 17.210 Atomic orbital electron populations 1.69890 1.06448 1.26952 1.50133 1.24888 0.94471 0.98892 0.93382 0.86946 0.80388 0.83823 0.78821 1.19879 1.22222 1.18526 1.20577 0.87784 0.94551 1.49903 0.91063 1.18120 0.97895 0.94080 0.86244 0.93269 1.21687 1.00628 1.02766 0.90489 1.20928 0.77910 0.82680 0.88106 1.90775 1.37181 1.26938 1.81463 1.45941 1.62747 1.27143 1.04534 1.21373 1.02073 0.96493 0.81762 1.22433 1.05109 1.01726 0.70906 1.50077 1.10823 1.32017 1.11795 1.74747 1.22144 1.16265 1.02610 1.27403 0.91128 1.00980 0.96597 1.75919 1.17613 1.13633 1.08710 1.79068 1.09387 1.16997 0.99316 1.20721 0.91668 0.92609 0.98963 1.20957 0.98835 0.98373 0.93804 1.21052 0.99123 0.99127 0.95242 1.20867 1.00873 0.95899 0.99090 1.20969 1.00879 0.97732 0.94851 1.21152 0.99767 0.99623 0.94885 0.92778 0.89444 0.91062 0.76926 0.90566 0.90227 0.85984 0.85703 0.74806 0.86261 0.87182 0.87426 0.87382 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 3 Si 0.87 22.49 27.04 -169.99 -4.60 17.89 16 4 H -0.27 -7.25 7.11 56.52 0.40 -6.84 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.26 -6.18 5.14 56.52 0.29 -5.89 16 7 C -0.49 -13.12 6.94 -34.44 -0.24 -13.36 16 8 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 9 C 0.06 1.22 1.28 -92.93 -0.12 1.10 16 10 H 0.05 1.15 4.79 -51.93 -0.25 0.90 16 11 C -0.12 -1.95 4.94 -27.88 -0.14 -2.08 16 12 C 0.52 9.13 7.58 -10.98 -0.08 9.05 16 13 O -0.49 -11.52 15.00 5.56 0.08 -11.44 16 14 N -0.75 -8.83 5.56 -60.30 -0.33 -9.16 16 15 C 0.11 1.25 6.00 -4.05 -0.02 1.23 16 16 C 0.12 0.90 6.72 -4.04 -0.03 0.88 16 17 N -0.13 -1.45 4.00 -10.67 -0.04 -1.50 16 18 N -0.31 -3.34 12.13 29.34 0.36 -2.98 16 19 C 0.14 1.38 13.26 -91.59 -1.21 0.16 16 20 N -0.29 -3.60 12.50 29.33 0.37 -3.23 16 21 N -0.05 -0.69 13.25 60.35 0.80 0.11 16 22 C -0.04 -0.79 4.77 -104.62 -0.50 -1.28 16 23 C -0.10 -1.90 8.87 -39.58 -0.35 -2.25 16 24 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.15 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.14 -2.59 9.13 -39.58 -0.36 -2.95 16 28 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.09 1.35 7.80 -51.93 -0.41 0.95 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 2.99 8.47 -40.82 -0.35 2.64 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.24 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 2.18 7.77 -52.48 -0.41 1.77 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 2.10 6.95 -52.49 -0.36 1.73 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -36.77 352.97 -6.87 -43.63 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.25 Total: 3.19 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -4.35 Total: -14.84 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 1.92 Total: -43.76 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.60 Total: 17.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.77 -6.87 -43.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356387144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.975 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds