Wall clock time and date at job start Fri Apr 10 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46684 * 265.00741 * 3 2 1 5 5 H 1.48505 * 109.46861 * 25.00269 * 3 2 1 6 6 H 1.48493 * 109.47134 * 145.00470 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99656 * 6.44677 * 7 2 1 9 9 C 1.50696 * 120.00223 * 186.45342 * 7 2 1 10 10 H 1.09003 * 109.47047 * 334.61243 * 9 7 2 11 11 C 1.52999 * 109.47101 * 214.61651 * 9 7 2 12 12 C 1.50708 * 109.46897 * 65.36618 * 11 9 7 13 13 O 1.21278 * 119.99938 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99463 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99604 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47311 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.47222 * 180.02562 * 16 15 14 18 18 N 1.28883 * 125.45274 * 89.99992 * 17 16 15 19 19 C 1.31036 * 107.91737 * 179.97438 * 18 17 16 20 20 N 1.33317 * 106.90062 * 359.97438 * 19 18 17 21 21 N 1.28780 * 125.44645 * 269.69228 * 17 16 15 22 22 C 1.50699 * 109.47567 * 94.61357 * 9 7 2 23 23 C 1.38239 * 119.99702 * 56.36087 * 22 9 7 24 24 C 1.38233 * 120.00118 * 179.79156 * 23 22 9 25 25 C 1.38235 * 119.99726 * 0.43578 * 24 23 22 26 26 C 1.38238 * 120.00024 * 359.81410 * 25 24 23 27 27 C 1.38231 * 120.00229 * 359.97438 * 26 25 24 28 28 H 0.97002 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47221 * 305.37018 * 11 9 7 30 30 H 1.08995 * 109.47399 * 185.36165 * 11 9 7 31 31 H 0.96997 * 120.00650 * 0.02562 * 14 12 11 32 32 H 1.08999 * 109.47387 * 59.99936 * 15 14 12 33 33 H 1.09001 * 109.47622 * 300.00085 * 15 14 12 34 34 H 1.09004 * 109.47167 * 299.99874 * 16 15 14 35 35 H 1.09002 * 109.47488 * 59.99854 * 16 15 14 36 36 H 1.07996 * 126.55129 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.99881 * 359.97438 * 23 22 9 38 38 H 1.07994 * 120.00274 * 180.27544 * 24 23 22 39 39 H 1.07998 * 120.00218 * 179.84197 * 25 24 23 40 40 H 1.07999 * 119.99940 * 180.02562 * 26 25 24 41 41 H 1.07996 * 120.00234 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6021 1.9855 -1.3948 5 1 1.3977 2.6809 0.5918 6 1 3.4899 1.4730 0.8029 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1264 -0.1041 9 6 3.5044 -1.1981 0.1472 10 1 3.9063 -0.2475 -0.2035 11 6 4.0950 -2.3391 -0.6836 12 6 3.8459 -2.0762 -2.1466 13 8 3.2539 -1.0752 -2.4906 14 7 4.2802 -2.9542 -3.0723 15 6 4.0377 -2.6991 -4.4944 16 6 4.6272 -3.8405 -5.3252 17 7 4.3852 -3.5851 -6.7473 18 7 5.1736 -2.9383 -7.5354 19 6 4.6245 -2.9150 -8.7249 20 7 3.4695 -3.5741 -8.6316 21 7 3.3532 -3.9757 -7.4112 22 6 3.8669 -1.3925 1.5970 23 6 3.4000 -2.4975 2.2840 24 6 3.7360 -2.6782 3.6126 25 6 4.5315 -1.7492 4.2568 26 6 4.9942 -0.6415 3.5712 27 6 4.6617 -0.4631 2.2414 28 1 -0.4850 0.8401 -0.0004 29 1 3.6226 -3.2789 -0.3978 30 1 5.1681 -2.4021 -0.5034 31 1 4.7527 -3.7554 -2.7971 32 1 4.5099 -1.7594 -4.7807 33 1 2.9645 -2.6359 -4.6744 34 1 5.7005 -3.9041 -5.1454 35 1 4.1546 -4.7801 -5.0389 36 1 5.0302 -2.4507 -9.6116 37 1 2.7751 -3.2212 1.7818 38 1 3.3749 -3.5437 4.1481 39 1 4.7920 -1.8889 5.2955 40 1 5.6160 0.0841 4.0744 41 1 5.0228 0.4025 1.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356387144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:34 Heat of formation + Delta-G solvation = 94.663522 kcal Electronic energy + Delta-G solvation = -25084.626400 eV Core-core repulsion = 21387.875484 eV Total energy + Delta-G solvation = -3696.750916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.38364 -40.83849 -39.82757 -37.35446 -35.87221 -35.18306 -34.10095 -33.71983 -31.59921 -31.35296 -30.08905 -27.89454 -25.77694 -24.98349 -24.17878 -23.29924 -23.12723 -21.82511 -20.85311 -19.03132 -18.87313 -18.47104 -17.81107 -17.17065 -16.95103 -16.77188 -16.43174 -16.10955 -15.80649 -15.35681 -15.23098 -14.85043 -14.81311 -14.50318 -14.14368 -13.88686 -13.71188 -13.63720 -13.30073 -13.25049 -12.90247 -12.74420 -12.60655 -12.10184 -12.06112 -12.04441 -11.89378 -11.79844 -11.46981 -11.45614 -11.09125 -10.71840 -10.56943 -10.13191 -9.59560 -9.28430 -8.23312 -6.19032 0.10603 0.70712 0.74848 0.84145 1.22380 1.29778 1.37864 1.39401 1.87456 2.34341 2.40372 3.09114 3.14873 3.25771 3.35696 3.45910 3.82913 4.02897 4.08018 4.14685 4.31667 4.34062 4.41244 4.48180 4.51633 4.59674 4.69491 4.74188 4.79823 4.88068 4.89113 5.07016 5.14040 5.22547 5.39778 5.40583 5.43949 5.69342 5.79552 5.84772 6.03971 6.33829 6.38008 6.67005 6.81123 7.29078 7.45250 7.48699 8.93561 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.003041 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.640906 B = 9204.705337 C =10087.535318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.024 3.976 3 Si 0.919 3.081 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.228 1.228 7 C -0.464 4.464 8 H 0.037 0.963 9 C 0.055 3.945 10 H 0.031 0.969 11 C -0.111 4.111 12 C 0.513 3.487 13 O -0.562 6.562 14 N -0.717 5.717 15 C 0.115 3.885 16 C 0.123 3.877 17 N -0.132 5.132 18 N -0.319 5.319 19 C 0.148 3.852 20 N -0.316 5.316 21 N -0.079 5.079 22 C -0.062 4.062 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.257 0.743 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.423 0.577 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.275 0.725 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.896 -10.566 -4.690 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.151 1.151 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.035 3.965 10 H 0.050 0.950 11 C -0.151 4.151 12 C 0.301 3.699 13 O -0.438 6.438 14 N -0.375 5.375 15 C -0.012 4.012 16 C 0.004 3.996 17 N -0.046 5.046 18 N -0.169 5.169 19 C -0.155 4.155 20 N -0.186 5.186 21 N -0.073 5.073 22 C -0.063 4.063 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.291 0.709 37 H 0.131 0.869 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.916 -10.081 -4.539 20.208 hybrid contribution -0.162 1.267 -0.653 1.435 sum 16.754 -8.814 -5.192 19.630 Atomic orbital electron populations 1.70032 1.08060 1.27110 1.54303 1.25594 0.94971 1.02110 0.94581 0.86181 0.80545 0.80492 0.78126 1.21701 1.22730 1.15126 1.20849 0.90585 0.92493 1.46288 0.94439 1.18024 0.94432 0.95286 0.88734 0.95049 1.21612 1.03025 1.01280 0.89162 1.21158 0.77113 0.82390 0.89254 1.90760 1.40562 1.29961 1.82498 1.45501 1.61081 1.26783 1.04107 1.21236 1.00336 0.97805 0.81817 1.22633 1.07261 1.00709 0.69000 1.50314 1.10311 1.31481 1.12501 1.74750 1.22508 1.16555 1.03097 1.28241 0.90028 0.99705 0.97483 1.75889 1.19026 1.14779 1.08896 1.79023 1.10324 1.18077 0.99880 1.20470 0.93943 0.94245 0.97598 1.21021 0.99271 0.98122 0.95155 1.21398 0.98442 1.00209 0.94267 1.21332 0.99162 0.94702 1.00674 1.21324 1.00557 0.98594 0.93837 1.21255 1.00399 0.99283 0.96230 0.93402 0.87901 0.86883 0.73830 0.92210 0.93406 0.82392 0.83002 0.70912 0.86945 0.84324 0.83741 0.84417 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.29 13.96 21.45 0.30 -61.99 16 2 C 0.02 1.42 5.47 84.66 0.46 1.89 16 3 Si 0.92 48.10 27.04 68.60 1.85 49.95 16 4 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 5 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.23 -10.56 5.14 99.48 0.51 -10.05 16 7 C -0.46 -25.70 6.94 25.60 0.18 -25.52 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C 0.05 2.38 1.28 -12.29 -0.02 2.36 16 10 H 0.03 1.47 4.79 -2.39 -0.01 1.46 16 11 C -0.11 -3.60 4.94 29.85 0.15 -3.45 16 12 C 0.51 18.06 7.58 87.66 0.66 18.72 16 13 O -0.56 -27.30 15.00 -3.02 -0.05 -27.35 16 14 N -0.72 -15.95 5.56 -463.06 -2.57 -18.52 16 15 C 0.11 2.59 6.00 86.38 0.52 3.11 16 16 C 0.12 1.61 6.72 86.38 0.58 2.19 16 17 N -0.13 -2.70 4.00 -187.68 -0.75 -3.45 16 18 N -0.32 -6.45 12.13 -61.10 -0.74 -7.19 16 19 C 0.15 2.67 13.26 180.69 2.40 5.06 16 20 N -0.32 -7.74 12.50 -61.11 -0.76 -8.51 16 21 N -0.08 -2.00 13.25 37.02 0.49 -1.51 16 22 C -0.06 -2.42 4.77 -19.86 -0.09 -2.51 16 23 C -0.12 -4.19 8.87 22.27 0.20 -3.99 16 24 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 25 C -0.14 -3.77 10.05 22.27 0.22 -3.55 16 26 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 27 C -0.15 -5.49 9.13 22.27 0.20 -5.29 16 28 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 29 H 0.10 3.02 7.80 -2.39 -0.02 3.00 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.42 5.00 8.47 -92.71 -0.79 4.22 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.16 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.28 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.11 4.05 7.77 -2.91 -0.02 4.03 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.11 3.85 6.95 -2.91 -0.02 3.83 16 Total: -1.00 -87.23 352.97 3.76 -83.47 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.08 Total: 12.97 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 5.91 Total: -17.87 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.04 Total: -101.17 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.85 Total: 49.95 kcal Total: -87.23 3.76 -83.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356387144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.131 kcal (2) G-P(sol) polarization free energy of solvation -87.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds