Wall clock time and date at job start Fri Apr 10 2020 18:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.09000 * 109.47098 * 55.00221 * 3 2 1 5 5 C 1.52996 * 109.47143 * 295.00194 * 3 2 1 6 6 C 1.52996 * 109.46951 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47365 * 59.99890 * 6 5 3 8 8 C 1.52996 * 109.47176 * 299.99973 * 7 6 5 9 9 H 1.09006 * 109.46822 * 300.00209 * 8 7 6 10 10 N 1.46499 * 109.47653 * 179.97438 * 8 7 6 11 11 C 1.34778 * 119.99800 * 84.99438 * 10 8 7 12 12 O 1.21590 * 120.00174 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99860 * 180.02562 * 11 10 8 14 14 C 1.46501 * 119.99921 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.46932 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00046 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99765 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00072 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99784 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00075 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00171 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47039 * 119.99973 * 22 20 18 25 25 H 1.48497 * 109.47471 * 240.00380 * 22 20 18 26 26 C 1.52997 * 109.46821 * 175.00086 * 3 2 1 27 27 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 28 28 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 30 30 H 1.09006 * 109.46822 * 299.99683 * 5 3 2 31 31 H 1.08997 * 109.47474 * 59.99798 * 5 3 2 32 32 H 1.08993 * 109.47243 * 299.99585 * 6 5 3 33 33 H 1.09007 * 109.46984 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47083 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46998 * 59.99958 * 7 6 5 36 36 H 0.96998 * 120.00251 * 265.00912 * 10 8 7 37 37 H 0.96998 * 120.00191 * 0.02562 * 13 11 10 38 38 H 1.08996 * 109.47324 * 300.00297 * 14 13 11 39 39 H 1.09003 * 109.47002 * 60.01008 * 14 13 11 40 40 H 0.97000 * 120.00420 * 359.97438 * 17 15 14 41 41 H 0.97000 * 119.99879 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47394 * 299.99438 * 26 3 2 43 43 H 1.08990 * 109.47621 * 60.00338 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0875 3.8922 -1.3075 7 6 3.6025 4.0653 -1.1821 8 6 4.0818 3.4312 0.1252 9 1 3.5895 3.9182 0.9670 10 7 5.5325 3.5964 0.2451 11 6 6.0410 4.7332 0.7606 12 8 5.2957 5.6214 1.1266 13 7 7.3756 4.8853 0.8704 14 6 7.9283 6.1207 1.4313 15 6 9.4330 6.0381 1.4427 16 8 9.9890 5.0451 1.0231 17 7 10.1608 7.0676 1.9191 18 6 11.5297 6.9926 1.9290 19 1 12.0248 6.1085 1.5554 20 6 12.2801 8.0541 2.4196 21 7 11.6777 9.1297 2.8747 22 14 14.1452 7.9517 2.4337 23 1 14.5735 6.6454 1.8721 24 1 14.7077 9.0522 1.6104 25 1 14.6374 8.0762 3.8293 26 6 3.7370 1.9411 0.1257 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2354 1.9149 -2.1491 31 1 0.6636 2.2779 -1.3969 32 1 1.5953 4.3791 -0.4658 33 1 1.7465 4.3438 -2.2391 34 1 3.8482 5.1273 -1.1827 35 1 4.0948 3.5784 -2.0240 36 1 6.1271 2.8878 -0.0467 37 1 7.9702 4.1769 0.5781 38 1 7.6159 6.9683 0.8213 39 1 7.5636 6.2522 2.4501 40 1 9.7162 7.8618 2.2543 41 1 12.2015 9.8706 3.2176 42 1 4.0784 1.4894 1.0571 43 1 4.2295 1.4545 -0.7160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358307591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:44 Heat of formation + Delta-G solvation = -111.432097 kcal Electronic energy + Delta-G solvation = -23514.752503 eV Core-core repulsion = 19912.215811 eV Total energy + Delta-G solvation = -3602.536692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38096 -40.20321 -39.16185 -36.23824 -35.26251 -35.20951 -33.36606 -31.88102 -30.92987 -29.61227 -28.67449 -26.34533 -23.90014 -23.47618 -21.82029 -21.36395 -21.10214 -20.10697 -19.47163 -18.00507 -17.40462 -16.99906 -16.82438 -16.48416 -16.22149 -15.91757 -15.71951 -15.48970 -15.30446 -15.19338 -14.90930 -14.48115 -14.31692 -13.99106 -13.93221 -13.55866 -13.54933 -13.46662 -12.92625 -12.89421 -12.56609 -12.44164 -12.29401 -12.10958 -11.82046 -11.66586 -11.57687 -11.55626 -11.27600 -10.71873 -10.55159 -10.35994 -10.09619 -9.80822 -8.67488 -8.50765 -6.00905 0.70099 1.35502 1.42987 1.55753 1.62948 1.66594 1.90217 2.12990 2.29001 3.03356 3.16509 3.29582 3.61649 3.75236 3.84838 4.09220 4.12149 4.22047 4.32128 4.36345 4.37600 4.38964 4.40284 4.45234 4.47228 4.59729 4.85978 4.89290 5.00652 5.02021 5.07738 5.20575 5.26158 5.32664 5.38654 5.40014 5.56642 5.92114 5.97483 6.48573 7.03977 7.04070 7.43435 7.54852 7.95042 8.66379 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039757 B = 0.001966 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.118123 B =14242.061069 C =14604.784199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.305 6.305 3 C -0.038 4.038 4 H 0.090 0.910 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.129 4.129 8 C 0.173 3.827 9 H 0.071 0.929 10 N -0.729 5.729 11 C 0.706 3.294 12 O -0.630 6.630 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.098 4.098 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.409 0.591 37 H 0.410 0.590 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.879 -14.114 -7.582 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.077 6.077 3 C -0.167 4.167 4 H 0.109 0.891 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.168 4.168 8 C 0.067 3.933 9 H 0.089 0.911 10 N -0.385 5.385 11 C 0.406 3.594 12 O -0.511 6.511 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.137 4.137 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.440 -14.707 -7.408 27.834 hybrid contribution 0.542 1.077 0.189 1.220 sum -21.898 -13.630 -7.219 26.785 Atomic orbital electron populations 1.23450 0.91401 1.07311 1.05877 1.87074 1.10563 1.11986 1.98049 1.23034 0.98686 0.92811 1.02138 0.89137 1.21859 1.01818 0.95171 0.95795 1.21472 0.94288 0.96024 1.03008 1.21940 0.97135 1.00440 0.97267 1.20755 0.78470 0.95562 0.98522 0.91076 1.45024 1.08320 1.17688 1.67435 1.15931 0.81696 0.83257 0.78543 1.90878 1.59150 1.43242 1.57832 1.44703 1.05345 1.20450 1.67747 1.20572 0.89502 0.87861 1.00691 1.20430 0.89557 0.84377 0.83547 1.90468 1.73427 1.33356 1.53954 1.41841 1.06715 1.16662 1.54304 1.19777 0.82005 1.03615 1.41178 0.89564 1.26135 1.05294 0.94255 0.95523 1.69688 1.38452 1.06458 1.41022 0.84802 0.76356 0.78445 0.78310 1.19444 1.19644 1.19658 1.21490 0.93840 0.94293 1.04090 0.89218 0.87305 0.89854 0.90372 0.90346 0.91808 0.90076 0.93384 0.90783 0.75469 0.75248 0.89084 0.89108 0.76694 0.91084 0.90629 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.45 113.37 1.18 0.25 16 2 S -0.31 -4.44 21.79 -56.49 -1.23 -5.67 16 3 C -0.04 -0.49 2.65 30.59 0.08 -0.41 16 4 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.11 -1.15 5.11 30.59 0.16 -0.99 16 6 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 7 C -0.13 -2.29 5.49 30.59 0.17 -2.12 16 8 C 0.17 3.35 2.45 44.98 0.11 3.46 16 9 H 0.07 1.68 7.58 -2.38 -0.02 1.66 16 10 N -0.73 -16.46 5.08 -457.88 -2.33 -18.78 16 11 C 0.71 22.20 8.53 179.06 1.53 23.73 16 12 O -0.63 -24.01 16.01 -4.00 -0.06 -24.07 16 13 N -0.72 -23.92 5.53 -482.29 -2.67 -26.59 16 14 C 0.14 5.26 6.15 85.63 0.53 5.79 16 15 C 0.43 20.08 7.85 87.66 0.69 20.76 16 16 O -0.62 -32.23 15.24 -3.06 -0.05 -32.28 16 17 N -0.56 -28.19 5.29 -306.98 -1.62 -29.81 16 18 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 22 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 C -0.10 -1.45 4.67 30.58 0.14 -1.31 16 27 H 0.09 0.55 7.14 -2.39 -0.02 0.53 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 0.65 6.92 -2.39 -0.02 0.63 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 7.28 8.62 -92.71 -0.80 6.48 16 37 H 0.41 13.14 7.45 -92.71 -0.69 12.45 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 41 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.51 366.11 -0.78 -68.29 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -1.18 Total: 43.47 kcal Atomic # 6 Polarization: 24.01 SS G_CDS: 6.05 Total: 30.06 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.33 Total: -123.65 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.11 Total: -56.35 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -1.23 Total: -5.67 kcal Total: -67.51 -0.78 -68.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358307591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.140 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds