Wall clock time and date at job start Fri Apr 10 2020 18:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00278 * 2 1 4 4 C 1.50690 * 109.47504 * 275.00020 * 3 2 1 5 5 H 1.08007 * 120.00199 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00104 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00083 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99907 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47043 * 90.00080 * 8 6 4 10 10 H 1.48501 * 109.47088 * 209.99921 * 8 6 4 11 11 H 1.48504 * 109.47038 * 329.99783 * 8 6 4 12 12 S 1.65604 * 119.99993 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40236 * 156.46275 * 12 2 1 14 14 O 1.42095 * 106.40023 * 23.54106 * 12 2 1 15 15 N 1.65600 * 107.21781 * 270.00188 * 12 2 1 16 16 C 1.47024 * 125.65072 * 90.02164 * 15 12 2 17 17 C 1.54322 * 107.27320 * 178.89624 * 16 15 12 18 18 C 1.55149 * 102.94197 * 337.80858 * 17 16 15 19 19 H 1.09002 * 111.00848 * 277.38881 * 18 17 16 20 20 N 1.46902 * 111.00463 * 153.57982 * 18 17 16 21 21 C 1.48221 * 111.00247 * 71.45084 * 20 18 17 22 22 C 1.51125 * 105.44007 * 144.85390 * 21 20 18 23 23 C 1.31118 * 109.36885 * 343.14410 * 22 21 20 24 24 C 1.48226 * 110.99914 * 185.09347 * 20 18 17 25 25 C 1.47426 * 125.64935 * 269.97468 * 15 12 2 26 26 H 1.08993 * 109.47532 * 269.99913 * 1 2 3 27 27 H 1.09004 * 109.46766 * 30.00173 * 1 2 3 28 28 H 1.08996 * 109.47173 * 149.99683 * 1 2 3 29 29 H 1.09006 * 109.46833 * 35.00313 * 3 2 1 30 30 H 1.08998 * 109.47407 * 154.99480 * 3 2 1 31 31 H 0.97007 * 120.00076 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.88241 * 59.47501 * 16 15 12 33 33 H 1.09003 * 109.88163 * 298.32055 * 16 15 12 34 34 H 1.09003 * 110.71708 * 219.44595 * 17 16 15 35 35 H 1.09000 * 110.71735 * 96.17532 * 17 16 15 36 36 H 1.09002 * 110.26794 * 263.87454 * 21 20 18 37 37 H 1.09003 * 110.26777 * 25.83869 * 21 20 18 38 38 H 1.08000 * 125.26831 * 163.06632 * 22 21 20 39 39 H 1.08004 * 125.24529 * 179.97438 * 23 22 21 40 40 H 1.09000 * 110.27046 * 334.06789 * 24 20 18 41 41 H 1.09002 * 110.27137 * 96.03479 * 24 20 18 42 42 H 1.08998 * 110.37149 * 85.33144 * 25 15 12 43 43 H 1.09001 * 110.36130 * 323.00772 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9290 1.1935 -2.2332 6 6 2.9999 2.9509 -1.6662 7 7 3.5018 3.6478 -0.6703 8 14 3.1777 3.5673 -3.4206 9 1 2.0168 4.4276 -3.7630 10 1 4.4308 4.3546 -3.5440 11 1 3.2270 2.4096 -4.3494 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5449 14 8 1.4113 -2.4062 -0.5455 15 7 2.5380 -1.8594 1.5810 16 6 1.6304 -2.6772 2.3989 17 6 2.2818 -2.8333 3.7892 18 6 3.7834 -2.5701 3.5009 19 1 4.2728 -3.4691 3.1262 20 7 4.4678 -2.0611 4.6970 21 6 4.6223 -3.1275 5.7148 22 6 5.9509 -2.8571 6.3824 23 6 6.6566 -2.0447 5.6332 24 6 5.8710 -1.6949 4.3905 25 6 3.7029 -1.4815 2.4017 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6501 2.0042 0.5895 30 1 3.1857 1.1177 0.4344 31 1 3.9646 4.4819 -0.8468 32 1 1.4982 -3.6567 1.9393 33 1 0.6664 -2.1775 2.4951 34 1 2.1340 -3.8427 4.1731 35 1 1.8871 -2.0932 4.4853 36 1 3.8147 -3.0725 6.4449 37 1 4.6324 -4.1071 5.2369 38 1 6.2681 -3.2682 7.3294 39 1 7.6470 -1.6831 5.8675 40 1 6.2344 -2.2709 3.5395 41 1 5.9460 -0.6274 4.1829 42 1 3.5487 -0.5001 2.8503 43 1 4.6100 -1.4850 1.7973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360573069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:51 Heat of formation + Delta-G solvation = -51.926912 kcal Electronic energy + Delta-G solvation = -25382.707053 eV Core-core repulsion = 21782.750700 eV Total energy + Delta-G solvation = -3599.956354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85306 -38.61758 -38.37155 -37.25298 -36.92413 -34.53192 -33.38979 -30.91618 -29.70891 -29.34073 -28.61919 -26.81756 -24.30492 -23.78131 -22.98968 -21.35536 -20.31294 -19.72740 -19.08210 -18.52189 -18.33652 -17.77277 -17.22022 -16.59206 -16.22809 -16.13767 -15.35474 -14.99472 -14.71389 -14.57822 -14.42561 -14.34432 -14.08287 -14.01745 -13.90810 -13.39362 -13.33352 -13.22654 -13.14302 -13.07171 -12.96160 -12.67549 -12.50643 -12.42645 -12.36521 -12.12156 -12.00245 -11.94167 -11.80084 -11.77724 -10.62196 -10.45825 -10.09255 -9.81357 -9.26982 -8.22499 -6.35170 -0.46322 1.28099 1.37515 1.39886 1.50659 1.95864 2.37461 2.49986 2.89119 3.07976 3.16017 3.43956 3.70439 3.76871 3.98859 4.03953 4.09637 4.28510 4.37074 4.43732 4.55242 4.56335 4.62260 4.68402 4.74810 4.75519 4.78698 4.81971 4.91627 5.02325 5.03122 5.09674 5.13516 5.21723 5.31304 5.47791 5.48719 5.59923 5.67184 5.90252 5.95843 6.01100 6.07357 6.72720 7.33867 8.85153 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.004068 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.278543 B = 6881.476071 C = 7990.569001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.004 6.004 3 C 0.275 3.725 4 C -0.553 4.553 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.275 1.275 12 S 2.809 3.191 13 O -1.006 7.006 14 O -1.001 7.001 15 N -1.020 6.020 16 C 0.111 3.889 17 C -0.103 4.103 18 C 0.068 3.932 19 H 0.067 0.933 20 N -0.504 5.504 21 C 0.051 3.949 22 C -0.166 4.166 23 C -0.178 4.178 24 C 0.040 3.960 25 C 0.123 3.877 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -14.539 16.085 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.846 5.846 3 C 0.151 3.849 4 C -0.592 4.592 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.200 1.200 12 S 2.819 3.181 13 O -0.990 6.990 14 O -0.985 6.985 15 N -0.861 5.861 16 C -0.014 4.014 17 C -0.142 4.142 18 C -0.042 4.042 19 H 0.084 0.916 20 N -0.228 5.228 21 C -0.076 4.076 22 C -0.184 4.184 23 C -0.197 4.197 24 C -0.088 4.088 25 C -0.003 4.003 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.498 -14.372 15.429 21.092 hybrid contribution 0.753 0.385 -1.209 1.476 sum 0.255 -13.987 14.220 19.947 Atomic orbital electron populations 1.21574 0.77952 1.03625 1.02473 1.57604 1.15894 1.22061 1.89023 1.18576 0.90188 0.80184 0.95962 1.21821 1.36573 1.06793 0.94027 0.93057 1.25757 0.94629 0.96655 1.01607 1.70010 1.37721 1.15640 1.32838 0.85565 0.78257 0.78315 0.79644 1.18887 1.20187 1.19964 1.00856 0.72282 0.72357 0.72618 1.93552 1.42876 1.85510 1.77039 1.93490 1.67378 1.60452 1.77201 1.58951 1.31254 1.65854 1.30059 1.21996 0.93028 0.94975 0.91375 1.22626 0.91758 1.04488 0.95285 1.23009 0.96762 0.95093 0.89359 0.91563 1.65636 1.14063 1.34308 1.08835 1.22176 0.97412 0.93492 0.94528 1.23865 0.95390 0.98836 1.00356 1.23730 1.00624 0.99804 0.95505 1.22165 0.87649 1.01867 0.97104 1.21966 0.87370 0.98994 0.91947 0.90991 0.90980 0.90600 0.95508 0.96902 0.92284 0.90464 0.90285 0.87309 0.89027 0.88205 0.91545 0.82340 0.83319 0.92734 0.90418 0.91382 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.07 10.68 127.77 1.36 4.44 16 2 N -1.00 -43.51 3.23 -543.26 -1.75 -45.26 16 3 C 0.27 14.45 5.08 85.63 0.43 14.88 16 4 C -0.55 -32.21 9.38 25.60 0.24 -31.96 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 S 2.81 117.49 6.31 -56.49 -0.36 117.14 16 13 O -1.01 -51.16 16.43 -128.00 -2.10 -53.26 16 14 O -1.00 -42.28 16.32 -128.00 -2.09 -44.36 16 15 N -1.02 -32.58 3.76 -506.41 -1.90 -34.48 16 16 C 0.11 2.54 6.99 86.73 0.61 3.14 16 17 C -0.10 -1.79 6.22 31.78 0.20 -1.59 16 18 C 0.07 1.50 2.24 46.30 0.10 1.60 16 19 H 0.07 1.39 7.95 -2.39 -0.02 1.37 16 20 N -0.50 -10.51 5.42 -863.03 -4.68 -15.19 16 21 C 0.05 0.77 6.27 85.44 0.54 1.30 16 22 C -0.17 -2.34 10.96 25.66 0.28 -2.06 16 23 C -0.18 -2.98 10.95 25.66 0.28 -2.70 16 24 C 0.04 0.85 5.99 85.43 0.51 1.36 16 25 C 0.12 3.73 6.06 86.86 0.53 4.25 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.08 2.44 7.02 -2.39 -0.02 2.43 16 29 H 0.03 1.43 8.11 -2.38 -0.02 1.41 16 30 H 0.01 0.74 7.61 -2.39 -0.02 0.72 16 31 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 0.90 7.67 -2.39 -0.02 0.88 16 38 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.05 1.20 7.79 -2.39 -0.02 1.18 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.07 7.78 -2.39 -0.02 2.05 16 Total: -1.00 -73.74 361.26 -4.05 -77.79 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.98 Total: 11.02 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.55 Total: -6.10 kcal Atomic # 7 Polarization: -141.51 SS G_CDS: -8.05 Total: -149.56 kcal Atomic # 8 Polarization: -93.43 SS G_CDS: -4.19 Total: -97.62 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 117.49 SS G_CDS: -0.36 Total: 117.14 kcal Total: -73.74 -4.05 -77.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360573069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.866 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds