Wall clock time and date at job start Fri Apr 10 2020 18:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 120.00138 * 2 1 4 4 O 1.42098 * 104.27986 * 308.93149 * 3 2 1 5 5 O 1.42101 * 104.27754 * 181.07078 * 3 2 1 6 6 C 1.81397 * 104.44796 * 65.00287 * 3 2 1 7 7 H 1.09008 * 109.50183 * 300.07869 * 6 3 2 8 8 C 1.53120 * 109.50503 * 60.19224 * 6 3 2 9 9 C 1.53123 * 109.16070 * 177.59183 * 8 6 3 10 10 C 1.53034 * 109.28182 * 302.35293 * 9 8 6 11 11 N 1.46839 * 109.52552 * 59.17780 * 10 9 8 12 12 C 1.46901 * 111.00222 * 174.16216 * 11 10 9 13 13 C 1.53000 * 109.46769 * 294.21135 * 12 11 10 14 14 H 1.08990 * 109.47170 * 54.99770 * 13 12 11 15 15 C 1.47196 * 109.47160 * 294.99517 * 13 12 11 16 16 N 7.90435 * 77.04204 * 32.08495 * 2 1 3 17 17 C 1.53002 * 109.46776 * 174.99873 * 13 12 11 18 18 C 1.50701 * 109.46807 * 184.99822 * 17 13 12 19 19 H 1.07998 * 120.00496 * 359.97438 * 18 17 13 20 20 C 1.37879 * 119.99849 * 180.02562 * 18 17 13 21 21 N 1.31514 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46778 * 89.99942 * 22 20 18 24 24 H 1.48494 * 109.46946 * 209.99639 * 22 20 18 25 25 H 1.48502 * 109.47167 * 330.00099 * 22 20 18 26 26 C 1.46849 * 111.20047 * 298.25821 * 11 10 9 27 27 H 1.09002 * 109.47257 * 59.99740 * 1 2 3 28 28 H 1.09004 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46999 * 299.99764 * 1 2 3 30 30 H 0.97003 * 119.99378 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.52612 * 297.50545 * 8 6 3 32 32 H 1.08999 * 109.51658 * 57.63137 * 8 6 3 33 33 H 1.09006 * 109.49682 * 62.29343 * 9 8 6 34 34 H 1.09003 * 109.50315 * 182.40562 * 9 8 6 35 35 H 1.09006 * 109.45860 * 299.16276 * 10 9 8 36 36 H 1.09002 * 109.46096 * 179.19442 * 10 9 8 37 37 H 1.09002 * 109.47401 * 174.20842 * 12 11 10 38 38 H 1.09001 * 109.46874 * 54.20855 * 12 11 10 39 39 H 1.08993 * 109.47416 * 304.99509 * 17 13 12 40 40 H 1.09001 * 109.46966 * 65.00241 * 17 13 12 41 41 H 0.97010 * 119.99808 * 180.02562 * 21 20 18 42 42 H 1.08991 * 109.46839 * 181.75791 * 26 11 10 43 43 H 1.09005 * 109.46224 * 301.74076 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1703 -1.0712 5 8 3.6607 1.0491 -0.0257 6 6 1.8765 2.1972 1.5921 7 1 0.7986 2.3485 1.6522 8 6 2.3292 1.2808 2.7322 9 6 2.0284 1.9591 4.0717 10 6 2.7369 3.3147 4.1220 11 7 2.2692 4.1544 3.0119 12 6 2.8238 5.5113 3.1082 13 6 2.2670 6.2025 4.3544 14 1 2.4682 5.5875 5.2314 15 6 0.8140 6.3854 4.2062 16 7 -0.3074 6.5265 4.0917 17 6 2.9382 7.5670 4.5235 18 6 2.4815 8.1948 5.8152 19 1 1.7822 7.6730 6.4516 20 6 2.9557 9.4358 6.1839 21 7 3.8061 10.0719 5.4082 22 14 2.3891 10.2144 7.7847 23 1 3.3058 9.8130 8.8819 24 1 2.3995 11.6929 7.6469 25 1 1.0118 9.7560 8.0978 26 6 2.5893 3.5459 1.7143 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9499 -0.8401 -0.0004 31 1 1.7916 0.3345 2.6743 32 1 3.4003 1.0971 2.6483 33 1 0.9530 2.1066 4.1715 34 1 2.3873 1.3304 4.8866 35 1 3.8132 3.1653 4.0360 36 1 2.5131 3.8065 5.0687 37 1 2.5457 6.0812 2.2217 38 1 3.9101 5.4556 3.1783 39 1 4.0204 7.4396 4.5442 40 1 2.6642 8.2125 3.6890 41 1 4.1400 10.9450 5.6678 42 1 2.2584 4.2056 0.9123 43 1 3.6663 3.3953 1.6397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370857095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:04 Heat of formation + Delta-G solvation = -54.061822 kcal Electronic energy + Delta-G solvation = -24691.689470 eV Core-core repulsion = 21091.640540 eV Total energy + Delta-G solvation = -3600.048930 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.37919 -37.39080 -36.52415 -36.22900 -35.40770 -34.26135 -33.18533 -31.44595 -31.14900 -27.09809 -26.37365 -24.77471 -23.78448 -22.41876 -21.70406 -20.41016 -19.46714 -18.06745 -17.29837 -16.70204 -16.52386 -16.39755 -15.81839 -15.13789 -14.93467 -14.74573 -14.54122 -14.35951 -13.99222 -13.78017 -13.28332 -13.21595 -13.07992 -12.82804 -12.36795 -12.33922 -12.26186 -12.14681 -11.99531 -11.97031 -11.64041 -11.46997 -11.34908 -11.13468 -11.00719 -10.85176 -10.78004 -10.58998 -10.49542 -10.14618 -9.87913 -9.57109 -9.25125 -8.48616 -8.36293 -6.12089 -4.15522 -0.04739 2.39497 3.27146 3.34470 3.38399 3.41222 3.68634 3.78212 3.82773 3.88820 4.14022 4.36014 4.39456 4.58308 4.67121 4.82199 4.87361 4.98157 5.04722 5.17969 5.25863 5.26535 5.28471 5.33544 5.36221 5.44032 5.51571 5.58087 5.64256 5.73924 5.85677 5.97058 6.08834 6.29351 6.44911 6.52788 6.97507 7.03764 7.39025 7.49362 7.82747 8.19861 8.54694 8.89067 9.50139 10.98761 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.002821 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.225977 B = 9921.435454 C =10032.934171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.122 6.122 3 S 2.613 3.387 4 O -0.954 6.954 5 O -0.956 6.956 6 C -0.583 4.583 7 H 0.144 0.856 8 C -0.102 4.102 9 C -0.108 4.108 10 C 0.044 3.956 11 N -0.531 5.531 12 C 0.058 3.942 13 C 0.011 3.989 14 H 0.101 0.899 15 C 0.255 3.745 16 N -0.478 5.478 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.071 3.929 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.417 0.583 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.090 0.910 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -23.139 -7.926 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.882 5.882 3 S 2.705 3.295 4 O -0.944 6.944 5 O -0.946 6.946 6 C -0.693 4.693 7 H 0.162 0.838 8 C -0.141 4.141 9 C -0.147 4.147 10 C -0.083 4.083 11 N -0.256 5.256 12 C -0.070 4.070 13 C -0.011 4.011 14 H 0.119 0.881 15 C -0.061 4.061 16 N -0.155 5.155 17 C -0.008 4.008 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.059 4.059 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.251 0.749 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.199 -22.245 -8.807 24.138 hybrid contribution 0.748 0.104 1.522 1.699 sum -2.450 -22.141 -7.285 23.437 Atomic orbital electron populations 1.21514 0.78654 1.04216 1.02130 1.55359 1.15994 1.24530 1.92268 1.05079 0.73762 0.73951 0.76724 1.93608 1.78816 1.72233 1.49719 1.93596 1.32612 1.81183 1.87232 1.30559 1.11795 1.07129 1.19826 0.83771 1.21366 1.02119 0.96676 0.93896 1.21514 1.01968 0.95526 0.95711 1.22259 0.97264 0.93447 0.95367 1.61918 1.60155 1.02573 1.00973 1.22313 0.97893 0.87442 0.99346 1.19255 0.82674 1.01708 0.97481 0.88120 1.28831 0.94657 0.90865 0.91788 1.80987 1.13402 1.11127 1.10000 1.19182 0.96075 0.87396 0.98109 1.21120 1.26998 1.02987 1.05396 0.92516 1.24954 0.94874 0.97021 0.97103 1.69939 1.31190 1.14630 1.37180 0.86589 0.79252 0.78547 0.83684 1.20479 1.21128 1.19848 1.21720 0.97480 0.92065 0.94608 0.91326 0.89982 0.92079 0.74924 0.90536 0.90242 0.90756 0.90788 0.94084 0.89292 0.89817 0.92334 0.94405 0.95481 0.92756 0.89180 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.03 59.85 0.66 1.05 16 2 N -1.12 -6.99 5.85 -16.63 -0.10 -7.08 16 3 S 2.61 24.95 4.90 -107.50 -0.53 24.42 16 4 O -0.95 -12.56 17.73 -57.54 -1.02 -13.58 16 5 O -0.96 -11.69 17.90 -57.54 -1.03 -12.72 16 6 C -0.58 -5.11 2.86 -26.65 -0.08 -5.19 16 7 H 0.14 1.15 7.77 -51.92 -0.40 0.75 16 8 C -0.10 -0.77 5.15 -26.61 -0.14 -0.91 16 9 C -0.11 -0.94 6.09 -26.65 -0.16 -1.10 16 10 C 0.04 0.48 5.30 -3.84 -0.02 0.46 16 11 N -0.53 -6.72 4.36 -234.67 -1.02 -7.74 16 12 C 0.06 0.84 4.32 -3.82 -0.02 0.82 16 13 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 14 H 0.10 1.66 6.22 -51.93 -0.32 1.34 16 15 C 0.26 5.22 13.67 -20.76 -0.28 4.93 16 16 N -0.48 -10.66 18.54 42.16 0.78 -9.87 16 17 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 18 C -0.53 -13.82 8.60 -34.44 -0.30 -14.11 16 19 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.07 0.78 4.75 -3.83 -0.02 0.77 16 27 H 0.07 0.39 8.04 -51.93 -0.42 -0.02 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.23 7.72 -51.93 -0.40 -0.17 16 30 H 0.42 1.86 8.92 -34.47 -0.31 1.55 16 31 H 0.08 0.40 8.01 -51.93 -0.42 -0.02 16 32 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.02 6.12 -51.93 -0.32 0.70 16 37 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 38 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.09 0.98 8.01 -51.93 -0.42 0.56 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -35.09 365.08 -9.22 -44.30 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.75 Total: -3.66 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.77 Total: -11.09 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.40 Total: -49.26 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -2.05 Total: -26.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 24.95 SS G_CDS: -0.53 Total: 24.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.09 -9.22 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370857095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.759 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds