Wall clock time and date at job start Fri Apr 10 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 120.00138 * 2 1 4 4 O 1.42098 * 104.27986 * 308.93149 * 3 2 1 5 5 O 1.42101 * 104.27754 * 181.07078 * 3 2 1 6 6 C 1.81397 * 104.44796 * 65.00287 * 3 2 1 7 7 H 1.09008 * 109.50183 * 300.07869 * 6 3 2 8 8 C 1.53120 * 109.50503 * 60.19224 * 6 3 2 9 9 C 1.53123 * 109.16070 * 177.59183 * 8 6 3 10 10 C 1.53034 * 109.28182 * 302.35293 * 9 8 6 11 11 N 1.46839 * 109.52552 * 59.17780 * 10 9 8 12 12 C 1.46901 * 111.00222 * 174.16216 * 11 10 9 13 13 C 1.53000 * 109.46769 * 294.21135 * 12 11 10 14 14 H 1.08990 * 109.47170 * 54.99770 * 13 12 11 15 15 C 1.47196 * 109.47160 * 294.99517 * 13 12 11 16 16 N 7.90435 * 77.04204 * 32.08495 * 2 1 3 17 17 C 1.53002 * 109.46776 * 174.99873 * 13 12 11 18 18 C 1.50701 * 109.46807 * 184.99822 * 17 13 12 19 19 H 1.07998 * 120.00496 * 359.97438 * 18 17 13 20 20 C 1.37879 * 119.99849 * 180.02562 * 18 17 13 21 21 N 1.31514 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46778 * 89.99942 * 22 20 18 24 24 H 1.48494 * 109.46946 * 209.99639 * 22 20 18 25 25 H 1.48502 * 109.47167 * 330.00099 * 22 20 18 26 26 C 1.46849 * 111.20047 * 298.25821 * 11 10 9 27 27 H 1.09002 * 109.47257 * 59.99740 * 1 2 3 28 28 H 1.09004 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46999 * 299.99764 * 1 2 3 30 30 H 0.97003 * 119.99378 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.52612 * 297.50545 * 8 6 3 32 32 H 1.08999 * 109.51658 * 57.63137 * 8 6 3 33 33 H 1.09006 * 109.49682 * 62.29343 * 9 8 6 34 34 H 1.09003 * 109.50315 * 182.40562 * 9 8 6 35 35 H 1.09006 * 109.45860 * 299.16276 * 10 9 8 36 36 H 1.09002 * 109.46096 * 179.19442 * 10 9 8 37 37 H 1.09002 * 109.47401 * 174.20842 * 12 11 10 38 38 H 1.09001 * 109.46874 * 54.20855 * 12 11 10 39 39 H 1.08993 * 109.47416 * 304.99509 * 17 13 12 40 40 H 1.09001 * 109.46966 * 65.00241 * 17 13 12 41 41 H 0.97010 * 119.99808 * 180.02562 * 21 20 18 42 42 H 1.08991 * 109.46839 * 181.75791 * 26 11 10 43 43 H 1.09005 * 109.46224 * 301.74076 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1703 -1.0712 5 8 3.6607 1.0491 -0.0257 6 6 1.8765 2.1972 1.5921 7 1 0.7986 2.3485 1.6522 8 6 2.3292 1.2808 2.7322 9 6 2.0284 1.9591 4.0717 10 6 2.7369 3.3147 4.1220 11 7 2.2692 4.1544 3.0119 12 6 2.8238 5.5113 3.1082 13 6 2.2670 6.2025 4.3544 14 1 2.4682 5.5875 5.2314 15 6 0.8140 6.3854 4.2062 16 7 -0.3074 6.5265 4.0917 17 6 2.9382 7.5670 4.5235 18 6 2.4815 8.1948 5.8152 19 1 1.7822 7.6730 6.4516 20 6 2.9557 9.4358 6.1839 21 7 3.8061 10.0719 5.4082 22 14 2.3891 10.2144 7.7847 23 1 3.3058 9.8130 8.8819 24 1 2.3995 11.6929 7.6469 25 1 1.0118 9.7560 8.0978 26 6 2.5893 3.5459 1.7143 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9499 -0.8401 -0.0004 31 1 1.7916 0.3345 2.6743 32 1 3.4003 1.0971 2.6483 33 1 0.9530 2.1066 4.1715 34 1 2.3873 1.3304 4.8866 35 1 3.8132 3.1653 4.0360 36 1 2.5131 3.8065 5.0687 37 1 2.5457 6.0812 2.2217 38 1 3.9101 5.4556 3.1783 39 1 4.0204 7.4396 4.5442 40 1 2.6642 8.2125 3.6890 41 1 4.1400 10.9450 5.6678 42 1 2.2584 4.2056 0.9123 43 1 3.6663 3.3953 1.6397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370857095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:03 Heat of formation + Delta-G solvation = -80.847309 kcal Electronic energy + Delta-G solvation = -24692.850976 eV Core-core repulsion = 21091.640540 eV Total energy + Delta-G solvation = -3601.210436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31135 -38.27487 -37.96888 -37.09461 -35.99590 -35.70902 -34.78234 -32.77492 -32.10699 -28.67932 -26.82812 -25.97790 -24.68438 -23.74611 -23.19742 -21.17528 -20.17272 -18.80977 -18.58236 -18.20370 -17.79763 -17.18756 -16.81192 -16.49502 -15.91643 -15.76306 -15.64096 -15.28508 -14.75301 -14.66439 -14.50104 -14.33409 -14.20890 -13.83273 -13.73871 -13.61634 -13.26600 -13.20774 -13.16172 -13.03721 -12.93367 -12.74642 -12.52678 -12.49422 -12.40338 -12.25523 -11.89946 -11.75768 -11.60621 -11.36389 -11.29798 -10.99100 -10.55028 -10.40333 -9.32504 -8.19698 -6.28085 -0.79504 1.40113 1.42444 1.51395 1.75384 2.05768 2.13109 2.41081 2.63508 2.94939 3.12991 3.15958 3.32969 3.40322 3.63936 3.97734 4.03129 4.17096 4.23884 4.30142 4.32305 4.41765 4.60827 4.65783 4.69242 4.73354 4.74920 4.78843 4.88879 4.91652 4.97748 5.02300 5.09535 5.18612 5.39803 5.46133 5.60464 5.78572 5.97571 6.09804 6.14071 6.20352 6.82848 6.92799 7.40690 8.91224 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.002821 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.225977 B = 9921.435454 C =10032.934171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.111 6.111 3 S 2.628 3.372 4 O -0.996 6.996 5 O -0.986 6.986 6 C -0.571 4.571 7 H 0.154 0.846 8 C -0.103 4.103 9 C -0.105 4.105 10 C 0.036 3.964 11 N -0.540 5.540 12 C 0.065 3.935 13 C 0.022 3.978 14 H 0.120 0.880 15 C 0.266 3.734 16 N -0.512 5.512 17 C 0.037 3.963 18 C -0.538 4.538 19 H 0.055 0.945 20 C 0.011 3.989 21 N -0.924 5.924 22 Si 0.949 3.051 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.060 3.940 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.427 0.573 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.084 0.916 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 -25.321 -6.910 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.874 5.874 3 S 2.721 3.279 4 O -0.986 6.986 5 O -0.976 6.976 6 C -0.683 4.683 7 H 0.172 0.828 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.092 4.092 11 N -0.265 5.265 12 C -0.064 4.064 13 C 0.001 3.999 14 H 0.138 0.862 15 C -0.050 4.050 16 N -0.190 5.190 17 C -0.002 4.002 18 C -0.576 4.576 19 H 0.073 0.927 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.775 3.225 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.264 0.736 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.477 -24.460 -7.803 25.909 hybrid contribution 0.812 0.749 1.207 1.636 sum -2.665 -23.711 -6.596 24.755 Atomic orbital electron populations 1.21764 0.77426 1.06092 1.02270 1.55016 1.16662 1.23697 1.91975 1.04395 0.72956 0.74112 0.76439 1.93558 1.79344 1.73658 1.52002 1.93550 1.34582 1.81732 1.87701 1.30452 1.12179 1.06099 1.19544 0.82778 1.21474 1.02778 0.97433 0.92469 1.21511 1.01317 0.94519 0.97013 1.22409 0.98173 0.94352 0.94230 1.61867 1.60425 1.01985 1.02259 1.22146 0.98539 0.88561 0.97158 1.19187 0.80782 0.99730 1.00227 0.86201 1.29296 0.95100 0.89922 0.90688 1.80983 1.14538 1.12051 1.11381 1.19000 0.96172 0.89346 0.95660 1.21536 1.26414 1.03167 1.06497 0.92693 1.25721 0.95168 0.97821 1.00082 1.70038 1.32473 1.15049 1.38808 0.85684 0.78772 0.77525 0.80537 1.19091 1.21141 1.20023 1.21838 0.98366 0.93147 0.93623 0.92627 0.87261 0.90661 0.73640 0.87581 0.89999 0.91385 0.88720 0.93236 0.90064 0.90355 0.90860 0.94651 0.98107 0.92724 0.89713 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.03 127.77 1.41 1.92 16 2 N -1.11 -11.48 5.85 -206.53 -1.21 -12.69 16 3 S 2.63 47.34 4.90 -56.49 -0.28 47.06 16 4 O -1.00 -26.18 17.73 -127.65 -2.26 -28.45 16 5 O -0.99 -23.19 17.90 -127.65 -2.28 -25.47 16 6 C -0.57 -8.94 2.86 30.65 0.09 -8.85 16 7 H 0.15 2.12 7.77 -2.39 -0.02 2.11 16 8 C -0.10 -1.23 5.15 30.68 0.16 -1.08 16 9 C -0.10 -1.50 6.09 30.65 0.19 -1.32 16 10 C 0.04 0.70 5.30 86.33 0.46 1.16 16 11 N -0.54 -12.90 4.36 -896.36 -3.91 -16.80 16 12 C 0.06 1.81 4.32 86.30 0.37 2.18 16 13 C 0.02 0.79 2.14 -12.60 -0.03 0.76 16 14 H 0.12 3.78 6.22 -2.39 -0.01 3.77 16 15 C 0.27 10.78 13.67 89.44 1.22 12.00 16 16 N -0.51 -22.73 18.54 20.01 0.37 -22.36 16 17 C 0.04 1.69 4.42 29.85 0.13 1.82 16 18 C -0.54 -28.18 8.60 25.60 0.22 -27.96 16 19 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 20 C 0.01 0.60 5.46 84.66 0.46 1.06 16 21 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 22 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.06 1.25 4.75 86.33 0.41 1.66 16 27 H 0.05 0.57 8.04 -2.39 -0.02 0.55 16 28 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 0.35 7.72 -2.39 -0.02 0.33 16 30 H 0.43 2.78 8.92 -96.74 -0.86 1.91 16 31 H 0.11 0.67 8.01 -2.39 -0.02 0.65 16 32 H 0.08 0.99 8.04 -2.39 -0.02 0.97 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 1.70 6.12 -2.39 -0.01 1.69 16 37 H 0.08 2.26 7.99 -2.39 -0.02 2.24 16 38 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.08 1.82 8.01 -2.39 -0.02 1.81 16 43 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -75.40 365.08 -2.02 -77.41 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.15 Total: 5.40 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.09 Total: -16.64 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -4.46 Total: -104.44 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -4.55 Total: -53.92 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 47.34 SS G_CDS: -0.28 Total: 47.06 kcal Total: -75.40 -2.02 -77.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370857095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.436 kcal (2) G-P(sol) polarization free energy of solvation -75.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds