Wall clock time and date at job start Fri Apr 10 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00429 * 2 1 4 4 C 1.50692 * 109.47502 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00253 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99875 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46715 * 184.91789 * 7 6 4 9 9 H 1.09007 * 109.50732 * 174.07288 * 8 7 6 10 10 C 1.53103 * 109.50954 * 294.15972 * 8 7 6 11 11 O 1.43009 * 109.26067 * 176.78829 * 10 8 7 12 12 C 1.43015 * 113.73572 * 301.32722 * 11 10 8 13 13 C 1.53098 * 109.26112 * 58.67112 * 12 11 10 14 14 N 1.47010 * 109.25762 * 303.15529 * 13 12 11 15 15 C 1.46904 * 110.99983 * 182.38932 * 14 13 12 16 16 C 1.50701 * 109.47192 * 300.85264 * 15 14 13 17 17 O 1.21296 * 119.99734 * 354.45308 * 16 15 14 18 18 N 1.34777 * 119.99989 * 174.45586 * 16 15 14 19 19 C 1.37094 * 119.99839 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00141 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47476 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47328 * 120.00268 * 23 21 19 26 26 H 1.48499 * 109.47444 * 240.00058 * 23 21 19 27 27 H 1.09002 * 109.47302 * 60.00254 * 1 2 3 28 28 H 1.09007 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47101 * 299.99919 * 1 2 3 30 30 H 1.09010 * 109.47077 * 59.99629 * 3 2 1 31 31 H 1.09002 * 109.46975 * 300.00308 * 3 2 1 32 32 H 0.97003 * 119.99994 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47614 * 64.91906 * 7 6 4 34 34 H 1.09002 * 109.47174 * 304.91271 * 7 6 4 35 35 H 1.09006 * 109.50161 * 296.72133 * 10 8 7 36 36 H 1.09001 * 109.50231 * 56.80362 * 10 8 7 37 37 H 1.09006 * 109.50881 * 178.60835 * 12 11 10 38 38 H 1.09000 * 109.50838 * 298.69409 * 12 11 10 39 39 H 1.09003 * 109.50235 * 63.08815 * 13 12 11 40 40 H 1.08999 * 109.51160 * 183.16831 * 13 12 11 41 41 H 1.09004 * 109.46900 * 60.84913 * 15 14 13 42 42 H 1.08994 * 109.47265 * 180.84687 * 15 14 13 43 43 H 0.97002 * 119.99935 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00033 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 5.7369 2.1809 -0.0014 8 6 6.3589 3.5733 0.1230 9 1 7.4400 3.4810 0.2281 10 6 6.0351 4.3918 -1.1297 11 8 6.5544 5.7153 -0.9757 12 6 6.0371 6.4077 0.1637 13 6 6.3609 5.6098 1.4295 14 7 5.8066 4.2541 1.3031 15 6 6.0467 3.4713 2.5229 16 6 7.5290 3.3837 2.7799 17 8 8.3125 3.8329 1.9701 18 7 7.9841 2.8062 3.9094 19 6 9.3327 2.7261 4.1429 20 1 10.0303 3.1261 3.4220 21 6 9.8019 2.1312 5.3077 22 7 8.9531 1.6449 6.1851 23 14 11.6393 2.0226 5.6262 24 1 12.3754 2.6396 4.4936 25 1 11.9677 2.7450 6.8815 26 1 12.0357 0.5975 5.7571 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8594 3.1725 0.0001 33 1 6.0641 1.7188 -0.9328 34 1 6.0533 1.5652 0.8405 35 1 6.4916 3.9206 -2.0003 36 1 4.9545 4.4374 -1.2653 37 1 6.4949 7.3949 0.2286 38 1 4.9566 6.5135 0.0658 39 1 7.4419 5.5507 1.5559 40 1 5.9199 6.1049 2.2947 41 1 5.5595 3.9573 3.3682 42 1 5.6398 2.4681 2.3967 43 1 7.3575 2.4473 4.5571 44 1 9.2806 1.2293 6.9980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673021319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:09 Heat of formation + Delta-G solvation = -141.631129 kcal Electronic energy + Delta-G solvation = -27637.297034 eV Core-core repulsion = 23590.697942 eV Total energy + Delta-G solvation = -4046.599091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.36562 -39.41918 -37.99229 -37.56157 -35.69612 -34.46663 -33.67860 -31.49333 -31.38761 -29.31142 -28.81251 -26.73707 -25.67732 -25.29498 -23.74596 -22.45321 -20.85645 -20.00484 -19.16486 -17.94685 -17.49679 -16.88578 -16.63452 -16.28369 -16.13065 -16.00786 -15.53690 -15.00942 -14.84366 -14.70908 -14.44486 -14.20185 -14.08419 -13.82038 -13.68077 -13.20827 -13.04122 -12.92867 -12.25769 -12.00929 -11.88198 -11.70666 -11.59793 -11.57546 -11.25436 -10.99898 -10.70946 -10.44043 -10.39592 -10.29070 -10.04009 -9.78399 -9.56384 -9.53611 -9.31782 -8.95305 -8.06161 -7.59695 -6.50798 -3.92316 2.63654 2.79785 3.09854 3.22314 3.28967 3.73096 3.89131 3.96069 4.09644 4.11363 4.68004 4.84255 4.87506 4.93684 4.95250 4.99187 5.05902 5.11081 5.13396 5.21951 5.31504 5.39579 5.43278 5.49867 5.66511 5.75476 5.82912 5.84671 5.97244 6.06382 6.11443 6.29726 6.48871 6.58607 6.74930 7.09431 7.14169 7.26504 7.46564 7.55709 7.94802 8.26855 8.48354 9.07049 9.42153 9.91583 10.65624 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003822 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.423713 B = 7323.568194 C = 9070.145414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.508 3.492 5 O -0.523 6.523 6 N -0.714 5.714 7 C 0.130 3.870 8 C 0.016 3.984 9 H 0.112 0.888 10 C 0.076 3.924 11 O -0.382 6.382 12 C 0.069 3.931 13 C -0.002 4.002 14 N -0.506 5.506 15 C 0.036 3.964 16 C 0.403 3.597 17 O -0.593 6.593 18 N -0.552 5.552 19 C -0.303 4.303 20 H 0.104 0.896 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.280 1.280 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.393 0.607 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 5.095 -10.547 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.293 3.707 5 O -0.398 6.398 6 N -0.369 5.369 7 C 0.007 3.993 8 C -0.093 4.093 9 H 0.130 0.870 10 C -0.002 4.002 11 O -0.300 6.300 12 C -0.008 4.008 13 C -0.130 4.130 14 N -0.230 5.230 15 C -0.095 4.095 16 C 0.189 3.811 17 O -0.481 6.481 18 N -0.186 5.186 19 C -0.433 4.433 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.206 1.206 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.226 0.774 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.410 4.444 -11.081 19.494 hybrid contribution 0.707 0.138 1.208 1.406 sum -14.704 4.582 -9.873 18.294 Atomic orbital electron populations 1.22830 0.80546 1.03245 1.00041 1.88030 1.19631 1.25342 1.95402 1.22238 0.91996 0.86858 1.02524 1.20223 0.88560 0.84780 0.77153 1.90754 1.74572 1.26571 1.47901 1.45808 1.07039 1.08682 1.75391 1.21398 0.78702 0.96535 1.02696 1.22919 1.02476 0.92481 0.91422 0.87045 1.22615 0.97940 0.82937 0.96691 1.87982 1.68746 1.26958 1.46347 1.22622 0.97975 0.95255 0.84977 1.23037 1.02973 0.89030 0.97945 1.62720 1.55918 1.02471 1.01904 1.22106 0.94390 0.99757 0.93279 1.20949 0.90647 0.85213 0.84283 1.90411 1.57744 1.53230 1.46732 1.42057 1.08325 1.50111 1.18120 1.19766 0.82667 1.36152 1.04736 0.87821 1.25308 1.00433 0.96453 0.95543 1.69614 1.34895 1.38614 1.10464 0.85799 0.82052 0.78040 0.78454 1.19184 1.20668 1.20599 0.93932 0.89174 0.93781 0.90155 0.90469 0.75952 0.91023 0.90564 0.88792 0.93315 0.88947 0.93227 0.89310 0.90604 0.89266 0.88954 0.77373 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.37 -4.48 10.24 -55.14 -0.56 -5.05 16 3 C 0.04 0.43 6.42 36.00 0.23 0.66 16 4 C 0.51 6.85 7.91 -10.99 -0.09 6.76 16 5 O -0.52 -9.75 16.50 -14.35 -0.24 -9.99 16 6 N -0.71 -8.28 5.11 -60.29 -0.31 -8.59 16 7 C 0.13 1.83 4.66 -4.04 -0.02 1.81 16 8 C 0.02 0.23 1.91 -67.60 -0.13 0.10 16 9 H 0.11 2.13 5.61 -51.93 -0.29 1.84 16 10 C 0.08 0.95 6.20 37.21 0.23 1.18 16 11 O -0.38 -5.56 10.83 -35.23 -0.38 -5.94 16 12 C 0.07 0.86 7.01 37.21 0.26 1.12 16 13 C 0.00 -0.03 5.25 -3.71 -0.02 -0.05 16 14 N -0.51 -7.30 4.21 -227.77 -0.96 -8.26 16 15 C 0.04 0.60 5.55 -4.97 -0.03 0.57 16 16 C 0.40 8.85 7.15 -10.98 -0.08 8.78 16 17 O -0.59 -14.57 11.16 5.54 0.06 -14.51 16 18 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 23 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.41 3.78 7.27 -40.82 -0.30 3.48 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.29 6.62 -51.93 -0.34 0.94 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.51 7.07 -51.93 -0.37 0.14 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.71 5.55 -51.93 -0.29 1.42 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.50 6.16 -51.93 -0.32 1.18 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -33.49 356.71 -6.53 -40.01 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.39 Total: 13.61 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 1.23 Total: 14.45 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.60 Total: -53.78 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.12 Total: -35.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.49 -6.53 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673021319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.618 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds