Wall clock time and date at job start Fri Apr 10 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00429 * 2 1 4 4 C 1.50692 * 109.47502 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00253 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99875 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46715 * 184.91789 * 7 6 4 9 9 H 1.09007 * 109.50732 * 174.07288 * 8 7 6 10 10 C 1.53103 * 109.50954 * 294.15972 * 8 7 6 11 11 O 1.43009 * 109.26067 * 176.78829 * 10 8 7 12 12 C 1.43015 * 113.73572 * 301.32722 * 11 10 8 13 13 C 1.53098 * 109.26112 * 58.67112 * 12 11 10 14 14 N 1.47010 * 109.25762 * 303.15529 * 13 12 11 15 15 C 1.46904 * 110.99983 * 182.38932 * 14 13 12 16 16 C 1.50701 * 109.47192 * 300.85264 * 15 14 13 17 17 O 1.21296 * 119.99734 * 354.45308 * 16 15 14 18 18 N 1.34777 * 119.99989 * 174.45586 * 16 15 14 19 19 C 1.37094 * 119.99839 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00141 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47476 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47328 * 120.00268 * 23 21 19 26 26 H 1.48499 * 109.47444 * 240.00058 * 23 21 19 27 27 H 1.09002 * 109.47302 * 60.00254 * 1 2 3 28 28 H 1.09007 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47101 * 299.99919 * 1 2 3 30 30 H 1.09010 * 109.47077 * 59.99629 * 3 2 1 31 31 H 1.09002 * 109.46975 * 300.00308 * 3 2 1 32 32 H 0.97003 * 119.99994 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47614 * 64.91906 * 7 6 4 34 34 H 1.09002 * 109.47174 * 304.91271 * 7 6 4 35 35 H 1.09006 * 109.50161 * 296.72133 * 10 8 7 36 36 H 1.09001 * 109.50231 * 56.80362 * 10 8 7 37 37 H 1.09006 * 109.50881 * 178.60835 * 12 11 10 38 38 H 1.09000 * 109.50838 * 298.69409 * 12 11 10 39 39 H 1.09003 * 109.50235 * 63.08815 * 13 12 11 40 40 H 1.08999 * 109.51160 * 183.16831 * 13 12 11 41 41 H 1.09004 * 109.46900 * 60.84913 * 15 14 13 42 42 H 1.08994 * 109.47265 * 180.84687 * 15 14 13 43 43 H 0.97002 * 119.99935 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00033 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 5.7369 2.1809 -0.0014 8 6 6.3589 3.5733 0.1230 9 1 7.4400 3.4810 0.2281 10 6 6.0351 4.3918 -1.1297 11 8 6.5544 5.7153 -0.9757 12 6 6.0371 6.4077 0.1637 13 6 6.3609 5.6098 1.4295 14 7 5.8066 4.2541 1.3031 15 6 6.0467 3.4713 2.5229 16 6 7.5290 3.3837 2.7799 17 8 8.3125 3.8329 1.9701 18 7 7.9841 2.8062 3.9094 19 6 9.3327 2.7261 4.1429 20 1 10.0303 3.1261 3.4220 21 6 9.8019 2.1312 5.3077 22 7 8.9531 1.6449 6.1851 23 14 11.6393 2.0226 5.6262 24 1 12.3754 2.6396 4.4936 25 1 11.9677 2.7450 6.8815 26 1 12.0357 0.5975 5.7571 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8594 3.1725 0.0001 33 1 6.0641 1.7188 -0.9328 34 1 6.0533 1.5652 0.8405 35 1 6.4916 3.9206 -2.0003 36 1 4.9545 4.4374 -1.2653 37 1 6.4949 7.3949 0.2286 38 1 4.9566 6.5135 0.0658 39 1 7.4419 5.5507 1.5559 40 1 5.9199 6.1049 2.2947 41 1 5.5595 3.9573 3.3682 42 1 5.6398 2.4681 2.3967 43 1 7.3575 2.4473 4.5571 44 1 9.2806 1.2293 6.9980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673021319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:09 Heat of formation + Delta-G solvation = -170.498226 kcal Electronic energy + Delta-G solvation = -27638.548805 eV Core-core repulsion = 23590.697942 eV Total energy + Delta-G solvation = -4047.850863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64416 -40.57283 -39.53218 -38.37840 -36.98513 -36.07392 -35.21692 -33.37477 -32.58027 -30.46890 -29.83627 -27.72622 -27.13187 -26.27127 -25.25823 -23.58212 -21.95209 -21.44853 -20.73728 -19.82240 -18.50392 -17.87896 -17.80865 -17.64876 -17.13059 -17.11060 -16.63763 -16.53911 -16.08240 -15.82082 -15.80752 -15.63265 -15.43878 -15.22800 -15.03116 -14.61474 -14.04101 -13.94388 -13.61730 -13.35671 -13.21236 -13.01204 -12.96296 -12.79966 -12.47193 -12.34753 -12.26004 -12.16767 -11.96192 -11.50211 -11.38984 -11.08251 -10.88352 -10.70895 -10.58148 -10.07383 -10.03541 -9.14815 -8.51140 -6.00964 1.30976 1.37448 1.51032 1.61375 1.87691 1.97027 2.24945 2.74098 2.96575 3.14765 3.19657 3.22245 3.73341 3.78060 3.87073 4.02685 4.24319 4.26286 4.31671 4.33426 4.34158 4.47642 4.50847 4.55346 4.59348 4.62250 4.64105 4.68455 4.76819 4.91271 4.94684 5.05952 5.24760 5.36030 5.39269 5.74783 5.88331 5.95725 6.10639 6.23997 6.52276 6.62891 7.06561 7.28713 7.49082 8.03202 8.64725 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003822 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.423713 B = 7323.568194 C = 9070.145414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.048 3.952 4 C 0.504 3.496 5 O -0.584 6.584 6 N -0.695 5.695 7 C 0.140 3.860 8 C 0.022 3.978 9 H 0.064 0.936 10 C 0.079 3.921 11 O -0.404 6.404 12 C 0.071 3.929 13 C -0.003 4.003 14 N -0.481 5.481 15 C 0.048 3.952 16 C 0.407 3.593 17 O -0.619 6.619 18 N -0.569 5.569 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.272 1.272 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.421 0.579 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.395 0.605 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.590 6.521 -11.179 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.031 4.031 4 C 0.291 3.709 5 O -0.463 6.463 6 N -0.350 5.350 7 C 0.015 3.985 8 C -0.087 4.087 9 H 0.081 0.919 10 C 0.002 3.998 11 O -0.322 6.322 12 C -0.005 4.005 13 C -0.131 4.131 14 N -0.205 5.205 15 C -0.084 4.084 16 C 0.194 3.806 17 O -0.507 6.507 18 N -0.205 5.205 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.228 0.772 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.960 5.923 -11.724 22.250 hybrid contribution 1.439 -0.255 1.320 1.969 sum -16.521 5.668 -10.404 20.330 Atomic orbital electron populations 1.23025 0.78298 1.04023 1.01722 1.87972 1.22163 1.26983 1.95814 1.22359 0.88534 0.86664 1.05531 1.21057 0.90454 0.83877 0.75501 1.90731 1.75953 1.28870 1.50769 1.45594 1.05672 1.09321 1.74436 1.21093 0.80420 0.95493 1.01468 1.22767 0.99653 0.93420 0.92874 0.91862 1.22710 0.99946 0.81843 0.95329 1.87966 1.69715 1.27607 1.46937 1.22754 1.00002 0.94943 0.82810 1.23058 1.00024 0.89508 1.00499 1.62824 1.54609 1.02158 1.00861 1.22130 0.90121 1.00955 0.95184 1.22040 0.92991 0.82809 0.82741 1.90432 1.59514 1.53478 1.47257 1.42140 1.07524 1.51585 1.19231 1.19666 0.83795 1.37688 1.05084 0.90402 1.26039 1.04449 0.95760 0.94950 1.69672 1.36394 1.38988 1.10797 0.84902 0.77094 0.78277 0.78257 1.19859 1.19400 1.19764 0.91925 0.89059 0.92296 0.87358 0.86777 0.74062 0.90783 0.93907 0.87928 0.89950 0.87688 0.89910 0.94157 0.88816 0.86785 0.88321 0.77186 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.30 10.24 -129.94 -1.33 -10.63 16 3 C 0.05 0.79 6.42 71.23 0.46 1.25 16 4 C 0.50 12.85 7.91 87.65 0.69 13.54 16 5 O -0.58 -22.05 16.50 16.00 0.26 -21.79 16 6 N -0.70 -14.69 5.11 -463.06 -2.37 -17.05 16 7 C 0.14 3.93 4.66 86.38 0.40 4.33 16 8 C 0.02 0.64 1.91 44.93 0.09 0.73 16 9 H 0.06 2.53 5.61 -2.38 -0.01 2.52 16 10 C 0.08 1.80 6.20 72.02 0.45 2.24 16 11 O -0.40 -10.92 10.83 -148.98 -1.61 -12.53 16 12 C 0.07 1.59 7.01 72.01 0.50 2.09 16 13 C 0.00 -0.08 5.25 86.31 0.45 0.37 16 14 N -0.48 -13.19 4.21 -874.52 -3.68 -16.88 16 15 C 0.05 1.56 5.55 85.56 0.47 2.03 16 16 C 0.41 18.48 7.15 87.66 0.63 19.11 16 17 O -0.62 -31.91 11.16 -3.08 -0.03 -31.95 16 18 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 19 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.42 6.21 7.27 -92.71 -0.67 5.54 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 35 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.08 1.35 7.07 -2.39 -0.02 1.33 16 37 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.58 5.55 -2.39 -0.01 1.57 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 42 H 0.10 3.18 6.16 -2.39 -0.01 3.16 16 43 H 0.39 19.38 7.90 -92.71 -0.73 18.65 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -77.93 356.71 -1.77 -79.70 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.36 Total: 36.85 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 6.67 Total: 29.06 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -7.39 Total: -114.13 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -2.71 Total: -76.90 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.93 -1.77 -79.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673021319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.797 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds