Wall clock time and date at job start Fri Apr 10 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 116.99960 * 2 1 4 4 O 1.21504 * 120.00089 * 359.97438 * 3 2 1 5 5 N 1.34785 * 119.99660 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99770 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47002 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99907 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00065 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63305 * 179.97438 * 9 7 6 11 11 C 1.53191 * 108.77765 * 233.62992 * 10 9 7 12 12 C 1.53042 * 109.31213 * 305.36864 * 11 10 9 13 13 O 1.42898 * 109.45707 * 301.35558 * 12 11 10 14 14 C 1.53006 * 109.45627 * 181.38563 * 12 11 10 15 15 N 1.46498 * 109.46687 * 184.99631 * 14 12 11 16 16 C 1.36943 * 119.99784 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47161 * 120.00112 * 20 18 16 23 23 H 1.48501 * 109.47165 * 240.00189 * 20 18 16 24 24 C 1.53032 * 109.54267 * 61.36468 * 12 11 10 25 25 C 1.46930 * 120.63018 * 0.02562 * 9 7 6 26 26 H 1.09001 * 109.46635 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47250 * 300.00452 * 1 2 3 29 29 H 0.97003 * 120.00205 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47154 * 59.99015 * 6 5 3 31 31 H 1.09000 * 109.46925 * 299.99612 * 6 5 3 32 32 H 1.08997 * 109.58457 * 113.84471 * 10 9 7 33 33 H 1.09000 * 109.70357 * 353.48852 * 10 9 7 34 34 H 1.08996 * 109.49697 * 185.41557 * 11 10 9 35 35 H 1.09008 * 109.49708 * 65.31800 * 11 10 9 36 36 H 0.96702 * 113.99989 * 180.02562 * 13 12 11 37 37 H 1.08992 * 109.47046 * 304.99549 * 14 12 11 38 38 H 1.08997 * 109.47395 * 65.00090 * 14 12 11 39 39 H 0.97004 * 120.00552 * 359.97438 * 15 14 12 40 40 H 0.96998 * 120.00449 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49818 * 58.58154 * 24 12 11 42 42 H 1.08994 * 109.50136 * 178.68248 * 24 12 11 43 43 H 1.08996 * 109.58964 * 246.15670 * 25 9 7 44 44 H 1.09001 * 109.58715 * 6.58115 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0022 8 8 6.0318 1.2571 -0.0021 9 7 6.3894 3.4467 -0.0034 10 6 7.8480 3.2702 -0.0040 11 6 8.4414 4.0657 1.1630 12 6 7.9845 5.5231 1.0662 13 8 8.4058 6.0720 -0.1841 14 6 8.6033 6.3283 2.2108 15 7 8.0734 7.6939 2.1893 16 6 8.4856 8.6031 3.1267 17 1 9.2017 8.3135 3.8815 18 6 7.9839 9.8972 3.1060 19 7 7.1116 10.2503 2.1858 20 14 8.5468 11.1377 4.3842 21 1 9.5234 10.4958 5.3005 22 1 9.1890 12.2915 3.7050 23 1 7.3751 11.6116 5.1638 24 6 6.4587 5.5888 1.1634 25 6 5.8428 4.8105 -0.0031 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.9375 0.4565 -0.0005 30 1 3.7817 3.1327 0.8888 31 1 3.7812 3.1321 -0.8911 32 1 8.2601 3.6377 -0.9437 33 1 8.0905 2.2140 0.1131 34 1 9.5295 4.0217 1.1172 35 1 8.0989 3.6389 2.1057 36 1 8.1503 6.9956 -0.3142 37 1 8.3553 5.8572 3.1618 38 1 9.6863 6.3569 2.0909 39 1 7.4304 7.9541 1.5111 40 1 6.7607 11.1544 2.1716 41 1 6.1348 5.1476 2.1060 42 1 6.1356 6.6287 1.1179 43 1 6.0911 5.3040 -0.9427 44 1 4.7601 4.7703 0.1159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674062026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:19 Heat of formation + Delta-G solvation = -146.121583 kcal Electronic energy + Delta-G solvation = -26908.191603 eV Core-core repulsion = 22861.397791 eV Total energy + Delta-G solvation = -4046.793812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.93346 -40.31248 -38.70860 -36.91619 -35.71368 -34.87846 -34.09419 -32.17940 -31.39048 -30.41503 -29.04055 -27.39873 -26.32952 -23.88312 -23.45619 -22.13228 -21.52437 -20.42843 -19.69552 -18.81539 -17.59939 -17.34070 -16.95566 -16.81314 -16.23350 -16.08188 -15.56810 -15.02265 -14.80997 -14.48095 -14.31190 -14.25917 -14.15766 -13.60878 -13.42774 -13.30633 -12.91521 -12.82309 -12.56819 -12.38651 -12.34599 -11.97929 -11.61988 -11.18481 -11.11721 -11.07777 -11.06110 -10.94802 -10.89192 -10.37810 -10.19450 -10.07211 -9.73569 -9.63775 -9.50684 -8.99798 -8.73216 -7.05955 -5.88375 -3.17519 1.75504 2.28095 2.52482 2.82048 3.37416 3.43879 3.45542 3.97029 4.10426 4.47111 4.49830 4.72060 4.83466 4.89873 4.91760 4.95725 4.97912 5.04523 5.10950 5.18203 5.32519 5.42835 5.47010 5.55982 5.70937 5.74074 5.81849 5.89398 5.95718 6.02648 6.04747 6.26048 6.28923 6.45540 6.62531 6.63774 7.06371 7.16822 7.61793 7.81836 8.00834 8.01148 8.30433 9.41669 9.94707 10.28817 11.34427 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002672 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.454290 B =10475.859599 C =11566.872450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.571 6.571 5 N -0.698 5.698 6 C 0.118 3.882 7 C 0.511 3.489 8 O -0.545 6.545 9 N -0.598 5.598 10 C 0.119 3.881 11 C -0.117 4.117 12 C 0.130 3.870 13 O -0.561 6.561 14 C 0.128 3.872 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.158 4.158 25 C 0.106 3.894 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.418 0.582 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.383 0.617 37 H 0.026 0.974 38 H 0.030 0.970 39 H 0.381 0.619 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 -18.762 -6.547 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.460 6.460 5 N -0.360 5.360 6 C -0.009 4.009 7 C 0.298 3.702 8 O -0.423 6.423 9 N -0.330 5.330 10 C -0.003 4.003 11 C -0.156 4.156 12 C 0.088 3.912 13 O -0.369 6.369 14 C 0.000 4.000 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.197 4.197 25 C -0.017 4.017 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.257 0.743 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.763 -19.398 -6.482 21.876 hybrid contribution -0.101 1.357 0.699 1.530 sum -7.864 -18.042 -5.782 20.513 Atomic orbital electron populations 1.23227 0.74100 1.03568 1.02903 1.86246 1.24377 1.30774 1.87032 1.17964 0.83041 0.82330 0.76420 1.91028 1.64627 1.34780 1.55563 1.44214 1.03280 1.10398 1.78142 1.21097 0.89556 0.84736 1.05472 1.20290 0.88472 0.84821 0.76582 1.90687 1.77147 1.23413 1.51050 1.48063 1.07132 1.06129 1.71704 1.21582 0.77954 1.01264 0.99516 1.21857 1.01737 0.93209 0.98747 1.21291 0.92064 0.92834 0.84966 1.86367 1.81705 1.31994 1.36795 1.21324 0.96713 0.86901 0.95047 1.42337 1.52451 1.06201 1.36631 1.19245 1.20228 0.91003 1.06711 0.91094 1.24732 0.99539 0.97496 0.99015 1.69631 1.33820 1.19013 1.35750 0.86103 0.77779 0.81465 0.80740 1.20561 1.21788 1.21814 1.22547 0.96549 1.02255 0.98331 1.21885 0.98201 0.81090 1.00490 0.91724 0.87871 0.91691 0.74332 0.87683 0.87822 0.90275 0.89181 0.89796 0.90371 0.76749 0.95639 0.95253 0.78440 0.93428 0.90627 0.88630 0.89978 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.76 10.62 -40.31 -0.43 -4.19 16 3 C 0.65 7.73 8.75 54.06 0.47 8.20 16 4 O -0.57 -8.24 16.13 -19.27 -0.31 -8.55 16 5 N -0.70 -7.44 5.53 -66.47 -0.37 -7.80 16 6 C 0.12 1.18 4.50 -5.19 -0.02 1.16 16 7 C 0.51 5.97 7.77 -10.99 -0.09 5.89 16 8 O -0.54 -7.67 15.08 5.56 0.08 -7.59 16 9 N -0.60 -6.80 2.97 -172.79 -0.51 -7.31 16 10 C 0.12 1.40 6.19 -3.71 -0.02 1.38 16 11 C -0.12 -1.46 5.11 -26.61 -0.14 -1.60 16 12 C 0.13 1.88 0.71 -90.58 -0.06 1.82 16 13 O -0.56 -8.43 11.70 -35.23 -0.41 -8.84 16 14 C 0.13 2.38 5.43 -4.04 -0.02 2.36 16 15 N -0.73 -16.81 5.07 -59.91 -0.30 -17.11 16 16 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C -0.16 -2.13 4.87 -26.64 -0.13 -2.26 16 25 C 0.11 1.14 6.10 -3.73 -0.02 1.12 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.42 4.29 7.55 -40.82 -0.31 3.98 16 30 H 0.11 1.01 7.69 -51.93 -0.40 0.61 16 31 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 33 H 0.09 1.08 7.01 -51.93 -0.36 0.71 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.38 5.77 8.19 45.56 0.37 6.14 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 8.86 5.55 -40.82 -0.23 8.64 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.10 1.47 6.53 -51.93 -0.34 1.13 16 43 H 0.08 0.88 7.81 -51.93 -0.41 0.47 16 44 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -32.59 359.80 -6.07 -38.66 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -5.72 Total: 14.01 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 0.79 Total: 12.55 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.46 Total: -58.19 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.07 Total: -29.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.59 -6.07 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674062026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.463 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds