Wall clock time and date at job start Fri Apr 10 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 116.99960 * 2 1 4 4 O 1.21504 * 120.00089 * 359.97438 * 3 2 1 5 5 N 1.34785 * 119.99660 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99770 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47002 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99907 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00065 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63305 * 179.97438 * 9 7 6 11 11 C 1.53191 * 108.77765 * 233.62992 * 10 9 7 12 12 C 1.53042 * 109.31213 * 305.36864 * 11 10 9 13 13 O 1.42898 * 109.45707 * 301.35558 * 12 11 10 14 14 C 1.53006 * 109.45627 * 181.38563 * 12 11 10 15 15 N 1.46498 * 109.46687 * 184.99631 * 14 12 11 16 16 C 1.36943 * 119.99784 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47161 * 120.00112 * 20 18 16 23 23 H 1.48501 * 109.47165 * 240.00189 * 20 18 16 24 24 C 1.53032 * 109.54267 * 61.36468 * 12 11 10 25 25 C 1.46930 * 120.63018 * 0.02562 * 9 7 6 26 26 H 1.09001 * 109.46635 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47250 * 300.00452 * 1 2 3 29 29 H 0.97003 * 120.00205 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47154 * 59.99015 * 6 5 3 31 31 H 1.09000 * 109.46925 * 299.99612 * 6 5 3 32 32 H 1.08997 * 109.58457 * 113.84471 * 10 9 7 33 33 H 1.09000 * 109.70357 * 353.48852 * 10 9 7 34 34 H 1.08996 * 109.49697 * 185.41557 * 11 10 9 35 35 H 1.09008 * 109.49708 * 65.31800 * 11 10 9 36 36 H 0.96702 * 113.99989 * 180.02562 * 13 12 11 37 37 H 1.08992 * 109.47046 * 304.99549 * 14 12 11 38 38 H 1.08997 * 109.47395 * 65.00090 * 14 12 11 39 39 H 0.97004 * 120.00552 * 359.97438 * 15 14 12 40 40 H 0.96998 * 120.00449 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49818 * 58.58154 * 24 12 11 42 42 H 1.08994 * 109.50136 * 178.68248 * 24 12 11 43 43 H 1.08996 * 109.58964 * 246.15670 * 25 9 7 44 44 H 1.09001 * 109.58715 * 6.58115 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0022 8 8 6.0318 1.2571 -0.0021 9 7 6.3894 3.4467 -0.0034 10 6 7.8480 3.2702 -0.0040 11 6 8.4414 4.0657 1.1630 12 6 7.9845 5.5231 1.0662 13 8 8.4058 6.0720 -0.1841 14 6 8.6033 6.3283 2.2108 15 7 8.0734 7.6939 2.1893 16 6 8.4856 8.6031 3.1267 17 1 9.2017 8.3135 3.8815 18 6 7.9839 9.8972 3.1060 19 7 7.1116 10.2503 2.1858 20 14 8.5468 11.1377 4.3842 21 1 9.5234 10.4958 5.3005 22 1 9.1890 12.2915 3.7050 23 1 7.3751 11.6116 5.1638 24 6 6.4587 5.5888 1.1634 25 6 5.8428 4.8105 -0.0031 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.9375 0.4565 -0.0005 30 1 3.7817 3.1327 0.8888 31 1 3.7812 3.1321 -0.8911 32 1 8.2601 3.6377 -0.9437 33 1 8.0905 2.2140 0.1131 34 1 9.5295 4.0217 1.1172 35 1 8.0989 3.6389 2.1057 36 1 8.1503 6.9956 -0.3142 37 1 8.3553 5.8572 3.1618 38 1 9.6863 6.3569 2.0909 39 1 7.4304 7.9541 1.5111 40 1 6.7607 11.1544 2.1716 41 1 6.1348 5.1476 2.1060 42 1 6.1356 6.6287 1.1179 43 1 6.0911 5.3040 -0.9427 44 1 4.7601 4.7703 0.1159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674062026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:17 Heat of formation + Delta-G solvation = -172.763781 kcal Electronic energy + Delta-G solvation = -26909.346896 eV Core-core repulsion = 22861.397791 eV Total energy + Delta-G solvation = -4047.949104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.84522 -41.25791 -39.83571 -37.74956 -36.89000 -35.80221 -35.77823 -33.52408 -32.70068 -31.80779 -29.90696 -28.37913 -27.50714 -25.48141 -24.50468 -23.43830 -22.47229 -21.53713 -20.62262 -19.76335 -19.43655 -18.26287 -17.79072 -17.73275 -17.28442 -17.12484 -16.71809 -16.62492 -15.88436 -15.70930 -15.57775 -15.18284 -15.05826 -14.96571 -14.61203 -14.45249 -14.21898 -14.05906 -13.64464 -13.45282 -13.21150 -12.99533 -12.96298 -12.81563 -12.69826 -12.28467 -12.19999 -12.04095 -11.97294 -11.89327 -11.81785 -11.31154 -11.10904 -10.97949 -10.72211 -10.48183 -9.73081 -9.01233 -7.96898 -5.24546 0.97402 1.36380 1.47648 1.48981 1.57771 1.62850 1.92282 2.54951 3.18909 3.25002 3.27976 3.41660 3.66431 3.75586 3.90234 4.03425 4.17939 4.20735 4.25562 4.34611 4.36005 4.38652 4.42234 4.58679 4.69148 4.73004 4.77977 4.82797 4.89341 4.95240 5.02182 5.09165 5.18106 5.28608 5.34621 5.45273 5.50525 6.20429 6.24817 6.25943 6.76893 6.89358 7.15431 7.33995 8.05130 8.30424 9.25862 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002672 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.454290 B =10475.859599 C =11566.872450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.374 6.374 3 C 0.649 3.351 4 O -0.600 6.600 5 N -0.694 5.694 6 C 0.119 3.881 7 C 0.516 3.484 8 O -0.569 6.569 9 N -0.596 5.596 10 C 0.124 3.876 11 C -0.112 4.112 12 C 0.137 3.863 13 O -0.561 6.561 14 C 0.127 3.873 15 N -0.736 5.736 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.067 4.067 19 N -0.962 5.962 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.152 4.152 25 C 0.112 3.888 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.420 0.580 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.382 0.618 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 -19.855 -6.602 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.402 3.598 4 O -0.491 6.491 5 N -0.356 5.356 6 C -0.007 4.007 7 C 0.304 3.696 8 O -0.449 6.449 9 N -0.328 5.328 10 C 0.002 3.998 11 C -0.150 4.150 12 C 0.096 3.904 13 O -0.369 6.369 14 C 0.000 4.000 15 N -0.381 5.381 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.191 4.191 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.259 0.741 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.231 0.769 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.212 0.788 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.062 -20.533 -6.532 23.006 hybrid contribution 0.020 1.618 0.728 1.774 sum -8.042 -18.915 -5.804 21.358 Atomic orbital electron populations 1.23548 0.72394 1.05772 1.02799 1.86262 1.26067 1.29779 1.86657 1.18084 0.83202 0.82446 0.76028 1.91005 1.65263 1.35804 1.57072 1.44228 1.03026 1.10744 1.77593 1.21159 0.88234 0.84767 1.06521 1.20480 0.89013 0.84321 0.75797 1.90681 1.77678 1.24329 1.52185 1.48065 1.07005 1.06296 1.71424 1.21507 0.78219 1.01097 0.99017 1.21831 1.02191 0.91585 0.99416 1.21235 0.92685 0.93226 0.83246 1.86372 1.81828 1.31944 1.36714 1.21463 0.96239 0.85419 0.96871 1.42440 1.52373 1.07451 1.35856 1.19568 1.19473 0.91735 1.06922 0.91195 1.25435 1.00299 0.99253 1.01056 1.69754 1.35134 1.19059 1.37322 0.85169 0.77264 0.79170 0.78707 1.19519 1.22082 1.22079 1.22432 0.95670 1.01503 0.99507 1.21882 0.99318 0.80359 0.99419 0.91756 0.84554 0.91919 0.74065 0.86887 0.86417 0.90277 0.89036 0.89276 0.89897 0.76865 0.95626 0.96161 0.78759 0.93898 0.90848 0.90639 0.89411 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -7.09 10.62 -55.45 -0.59 -7.68 16 3 C 0.65 14.68 8.75 129.79 1.14 15.81 16 4 O -0.60 -16.72 16.13 19.83 0.32 -16.40 16 5 N -0.69 -13.78 5.53 -594.61 -3.29 -17.07 16 6 C 0.12 2.16 4.50 85.63 0.39 2.54 16 7 C 0.52 11.07 7.77 87.66 0.68 11.75 16 8 O -0.57 -15.15 15.08 -3.03 -0.05 -15.20 16 9 N -0.60 -12.38 2.97 -818.98 -2.43 -14.82 16 10 C 0.12 2.70 6.19 86.36 0.53 3.23 16 11 C -0.11 -2.62 5.11 30.67 0.16 -2.46 16 12 C 0.14 3.86 0.71 -10.77 -0.01 3.86 16 13 O -0.56 -16.35 11.70 -148.98 -1.74 -18.09 16 14 C 0.13 4.68 5.43 86.38 0.47 5.15 16 15 N -0.74 -33.96 5.07 -343.46 -1.74 -35.70 16 16 C -0.25 -13.03 9.99 84.03 0.84 -12.19 16 17 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.96 -55.38 13.06 21.65 0.28 -55.10 16 20 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 C -0.15 -3.94 4.87 30.66 0.15 -3.79 16 25 C 0.11 2.20 6.10 86.35 0.53 2.73 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.14 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.42 8.07 7.55 -92.71 -0.70 7.37 16 30 H 0.11 1.92 7.69 -2.39 -0.02 1.91 16 31 H 0.12 1.85 7.94 -2.39 -0.02 1.83 16 32 H 0.08 1.76 7.81 -2.39 -0.02 1.74 16 33 H 0.09 2.03 7.01 -2.39 -0.02 2.01 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.38 11.39 8.19 -74.06 -0.61 10.78 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.38 17.77 5.55 -92.71 -0.51 17.26 16 40 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.30 6.53 -2.39 -0.02 2.28 16 43 H 0.09 1.68 7.81 -2.39 -0.02 1.67 16 44 H 0.11 1.64 5.93 -2.39 -0.01 1.63 16 Total: -1.00 -68.47 359.80 -1.45 -69.92 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.77 Total: 38.22 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 6.53 Total: 25.19 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -7.18 Total: -122.68 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -2.06 Total: -57.36 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.47 -1.45 -69.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674062026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.846 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds