Wall clock time and date at job start Fri Apr 10 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99917 * 2 1 4 4 H 1.08997 * 110.88471 * 333.88162 * 3 2 1 5 5 C 1.54912 * 111.03435 * 97.78427 * 3 2 1 6 6 N 1.47427 * 104.82882 * 155.09600 * 5 3 2 7 7 C 1.34773 * 125.64841 * 155.91585 * 6 5 3 8 8 O 1.21586 * 120.00212 * 179.97438 * 7 6 5 9 9 N 1.34782 * 120.00019 * 359.95078 * 7 6 5 10 10 C 1.46499 * 120.00338 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47455 * 179.97438 * 10 9 7 12 12 O 1.21300 * 119.99786 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00321 * 180.02562 * 11 10 9 14 14 C 1.37096 * 120.00013 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00171 * 359.97438 * 14 13 11 16 16 C 1.38944 * 119.99719 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00477 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99745 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47074 * 60.00473 * 18 16 14 20 20 H 1.48503 * 109.46919 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47072 * 299.99909 * 18 16 14 22 22 C 1.47023 * 108.70434 * 335.87471 * 6 5 3 23 23 C 1.52996 * 110.01038 * 120.54974 * 22 6 5 24 24 C 1.53002 * 109.87920 * 241.64011 * 22 6 5 25 25 O 1.42905 * 109.47079 * 302.80563 * 24 22 6 26 26 C 1.54321 * 107.27347 * 1.05434 * 22 6 5 27 27 H 1.08996 * 109.47054 * 300.00041 * 1 2 3 28 28 H 1.08998 * 109.46986 * 59.99634 * 1 2 3 29 29 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 30 30 H 1.08992 * 110.37102 * 273.93417 * 5 3 2 31 31 H 1.08998 * 110.36759 * 36.26340 * 5 3 2 32 32 H 0.96998 * 119.99743 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46588 * 300.00138 * 10 9 7 34 34 H 1.09001 * 109.47100 * 59.99531 * 10 9 7 35 35 H 0.97005 * 119.99554 * 359.97438 * 13 11 10 36 36 H 0.96997 * 120.00783 * 179.97438 * 17 16 14 37 37 H 1.09008 * 109.47049 * 181.79869 * 23 22 6 38 38 H 1.09005 * 109.47175 * 301.79110 * 23 22 6 39 39 H 1.08999 * 109.47660 * 61.79524 * 23 22 6 40 40 H 1.09004 * 109.46930 * 182.80790 * 24 22 6 41 41 H 1.09000 * 109.47312 * 62.80734 * 24 22 6 42 42 H 0.96705 * 113.99788 * 180.02562 * 25 24 22 43 43 H 1.08993 * 110.72117 * 140.55398 * 26 22 6 44 44 H 1.08996 * 110.72091 * 263.65887 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3330 2.0324 -0.4483 5 6 2.4153 1.7338 1.4326 6 7 3.4905 2.7241 1.2405 7 6 3.8369 3.6874 2.1171 8 8 4.7443 4.4522 1.8528 9 7 3.1770 3.8032 3.2867 10 6 3.5532 4.8506 4.2394 11 6 2.6679 4.7647 5.4559 12 8 1.8071 3.9126 5.5206 13 7 2.8320 5.6353 6.4716 14 6 2.0270 5.5567 7.5786 15 1 1.2611 4.7975 7.6365 16 6 2.1965 6.4539 8.6259 17 7 3.1281 7.3780 8.5552 18 14 1.0992 6.3473 10.1339 19 1 1.2624 5.0163 10.7718 20 1 1.4801 7.4094 11.0993 21 1 -0.3177 6.5319 9.7291 22 6 4.1229 2.4861 -0.0652 23 6 3.9970 3.7330 -0.9429 24 6 5.5990 2.1331 0.1282 25 8 6.2507 3.1853 0.8427 26 6 3.3825 1.3033 -0.7242 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5684 2.1883 1.9464 31 1 2.7854 0.8763 1.9945 32 1 2.4526 3.1935 3.4972 33 1 4.5933 4.7154 4.5360 34 1 3.4330 5.8277 3.7713 35 1 3.5202 6.3170 6.4197 36 1 3.2462 8.0046 9.2862 37 1 4.4401 3.5363 -1.9193 38 1 2.9438 3.9857 -1.0662 39 1 4.5172 4.5652 -0.4688 40 1 6.0730 2.0070 -0.8452 41 1 5.6795 1.2052 0.6945 42 1 7.1918 3.0288 1.0013 43 1 3.2547 1.4756 -1.7929 44 1 3.9139 0.3684 -0.5465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680956996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:26 Heat of formation + Delta-G solvation = -143.237429 kcal Electronic energy + Delta-G solvation = -27415.684608 eV Core-core repulsion = 23369.015863 eV Total energy + Delta-G solvation = -4046.668746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65670 -38.77461 -38.02631 -37.16073 -35.73627 -34.30110 -33.55589 -31.96269 -31.29807 -30.59949 -27.40464 -26.76390 -26.67344 -25.36458 -24.41193 -22.20899 -21.09257 -19.52490 -18.97026 -18.05447 -17.70288 -17.16941 -17.05653 -16.15067 -15.54878 -15.43360 -15.14885 -15.07387 -14.79585 -14.49178 -14.38358 -14.00542 -13.90805 -13.61029 -13.44049 -13.10695 -12.86621 -12.45008 -12.26714 -12.13264 -11.91379 -11.85080 -11.70871 -11.59386 -11.43405 -11.16541 -11.07360 -10.81672 -10.48357 -10.27951 -10.02913 -9.83111 -9.58839 -9.48064 -8.63807 -8.56516 -8.34288 -8.05656 -6.47549 -3.89529 2.66071 3.16176 3.23312 3.27026 3.36138 3.64316 3.81437 4.09116 4.12590 4.18918 4.37099 4.52463 4.65062 4.84900 4.95109 4.98297 5.06432 5.10507 5.21176 5.21456 5.28177 5.36261 5.41452 5.45061 5.54894 5.56019 5.64041 5.71088 5.89318 5.98999 6.10549 6.14940 6.26951 6.51614 6.83523 6.94763 7.31785 7.49191 7.82292 7.96678 8.38161 8.50236 9.06528 9.09100 9.44378 9.92669 10.69418 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003028 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.822314 B = 9243.797214 C =10519.632800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.375 6.375 3 C 0.079 3.921 4 H 0.081 0.919 5 C 0.079 3.921 6 N -0.626 5.626 7 C 0.720 3.280 8 O -0.548 6.548 9 N -0.729 5.729 10 C 0.132 3.868 11 C 0.430 3.570 12 O -0.599 6.599 13 N -0.550 5.550 14 C -0.305 4.305 15 H 0.104 0.896 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.188 3.812 23 C -0.155 4.155 24 C 0.069 3.931 25 O -0.522 6.522 26 C -0.120 4.120 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.360 0.640 43 H 0.090 0.910 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -11.668 -19.917 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.020 3.980 4 H 0.099 0.901 5 C -0.046 4.046 6 N -0.367 5.367 7 C 0.421 3.579 8 O -0.422 6.422 9 N -0.388 5.388 10 C 0.004 3.996 11 C 0.216 3.784 12 O -0.486 6.486 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.122 0.878 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.102 3.898 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.324 6.324 26 C -0.158 4.158 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.240 0.760 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.205 0.795 43 H 0.108 0.892 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.750 -11.301 -19.837 22.842 hybrid contribution -0.168 -0.028 0.957 0.972 sum 0.582 -11.329 -18.879 22.026 Atomic orbital electron populations 1.22867 0.80509 1.03053 1.00416 1.87906 1.20132 1.26448 1.94774 1.23200 0.94742 0.85241 0.94824 0.90077 1.22666 0.91213 0.93033 0.97642 1.47391 1.37206 1.33423 1.18681 1.15306 0.82087 0.80837 0.79623 1.90946 1.30860 1.43638 1.76796 1.44834 1.39492 1.37018 1.17450 1.20719 0.98815 0.91180 0.88925 1.19819 0.87830 0.85402 0.85398 1.90482 1.37901 1.38837 1.81343 1.41780 1.32482 1.28821 1.15421 1.19671 1.14174 1.15701 0.93890 0.87802 1.25309 0.97397 0.95467 0.99533 1.69605 1.32238 1.17827 1.33913 0.85883 0.79887 0.77988 0.80252 1.19808 1.20876 1.19822 1.20735 0.91176 0.94885 0.82985 1.22144 1.01968 0.98743 0.98470 1.22506 0.92554 0.90689 0.95324 1.87163 1.25254 1.42533 1.77439 1.22777 0.94672 0.98230 1.00078 0.93468 0.93852 0.89369 0.90481 0.90663 0.76034 0.90158 0.90250 0.77018 0.91577 0.92230 0.92872 0.89567 0.93558 0.94130 0.79507 0.89163 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.61 10.52 -35.23 -0.37 -3.98 16 3 C 0.08 0.74 3.54 -24.58 -0.09 0.65 16 4 H 0.08 0.69 7.83 -51.93 -0.41 0.29 16 5 C 0.08 0.92 6.31 -2.53 -0.02 0.91 16 6 N -0.63 -8.69 2.82 -161.45 -0.46 -9.15 16 7 C 0.72 12.67 7.88 -86.92 -0.68 11.98 16 8 O -0.55 -10.93 12.02 -19.39 -0.23 -11.16 16 9 N -0.73 -13.34 5.49 -66.41 -0.36 -13.70 16 10 C 0.13 2.59 6.15 -5.20 -0.03 2.56 16 11 C 0.43 10.18 7.85 -10.99 -0.09 10.09 16 12 O -0.60 -15.72 15.24 5.54 0.08 -15.64 16 13 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 14 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 18 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.19 2.13 0.79 -130.84 -0.10 2.03 16 23 C -0.16 -1.77 8.26 37.16 0.31 -1.46 16 24 C 0.07 0.76 6.01 37.16 0.22 0.98 16 25 O -0.52 -7.21 9.34 -59.91 -0.56 -7.77 16 26 C -0.12 -1.02 5.76 -24.90 -0.14 -1.17 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.92 7.30 -51.93 -0.38 0.54 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 7.33 5.92 -40.82 -0.24 7.09 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.40 9.68 7.90 -40.82 -0.32 9.36 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.29 6.44 -51.93 -0.33 0.95 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.36 3.54 9.12 45.56 0.42 3.96 16 43 H 0.09 0.61 7.83 -51.93 -0.41 0.20 16 44 H 0.09 0.73 7.80 -51.93 -0.41 0.33 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.68 360.15 -6.41 -40.09 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -5.81 Total: 17.75 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 0.23 Total: 19.89 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.15 Total: -60.37 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.08 Total: -38.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.68 -6.41 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680956996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.152 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds