Wall clock time and date at job start Fri Apr 10 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00269 * 2 1 4 4 H 1.08997 * 110.88563 * 32.43321 * 3 2 1 5 5 C 1.54909 * 111.00715 * 268.54434 * 3 2 1 6 6 N 1.47422 * 104.83335 * 204.91419 * 5 3 2 7 7 C 1.34769 * 125.64911 * 204.08769 * 6 5 3 8 8 O 1.21592 * 120.00236 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00053 * 0.03307 * 7 6 5 10 10 C 1.46497 * 120.00024 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47128 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.37090 * 119.99722 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00228 * 0.02562 * 14 13 11 16 16 C 1.38955 * 119.99996 * 179.97438 * 14 13 11 17 17 N 1.31411 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00198 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 90.00074 * 18 16 14 20 20 H 1.48495 * 109.47293 * 210.00276 * 18 16 14 21 21 H 1.48502 * 109.47297 * 330.00060 * 18 16 14 22 22 C 1.47019 * 108.70165 * 24.36242 * 6 5 3 23 23 C 1.52996 * 109.88656 * 118.12763 * 22 6 5 24 24 C 1.53007 * 109.87914 * 239.29235 * 22 6 5 25 25 O 1.42894 * 109.46889 * 303.54356 * 24 22 6 26 26 C 1.54335 * 107.26986 * 358.57979 * 22 6 5 27 27 H 1.08998 * 109.46930 * 59.99996 * 1 2 3 28 28 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46871 * 299.99723 * 1 2 3 30 30 H 1.09002 * 110.35983 * 86.07662 * 5 3 2 31 31 H 1.09003 * 110.36499 * 323.75864 * 5 3 2 32 32 H 0.97000 * 120.00235 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47268 * 60.00051 * 10 9 7 34 34 H 1.08997 * 109.47471 * 300.00459 * 10 9 7 35 35 H 0.96995 * 120.00015 * 359.72695 * 13 11 10 36 36 H 0.97000 * 120.00310 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.47348 * 61.45346 * 23 22 6 38 38 H 1.09004 * 109.47447 * 181.45322 * 23 22 6 39 39 H 1.08998 * 109.46997 * 301.45087 * 23 22 6 40 40 H 1.09000 * 109.47223 * 63.54798 * 24 22 6 41 41 H 1.09001 * 109.46878 * 183.54628 * 24 22 6 42 42 H 0.96706 * 113.99605 * 180.02562 * 25 24 22 43 43 H 1.08997 * 110.85695 * 219.67750 * 26 22 6 44 44 H 1.08993 * 110.66674 * 96.52363 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3832 2.0100 0.5462 5 6 2.2697 1.7977 -1.4457 6 7 3.3612 2.7806 -1.3194 7 6 3.6197 3.7826 -2.1829 8 8 4.5512 4.5367 -1.9778 9 7 2.8456 3.9488 -3.2736 10 6 3.1263 5.0383 -4.2119 11 6 2.1234 5.0037 -5.3362 12 8 1.2590 4.1530 -5.3520 13 7 2.1871 5.9182 -6.3244 14 6 1.2752 5.8864 -7.3475 15 1 0.5055 5.1289 -7.3615 16 6 1.3404 6.8295 -8.3659 17 7 2.2766 7.7515 -8.3486 18 14 0.0974 6.7866 -9.7596 19 1 -1.0778 7.6204 -9.4005 20 1 0.7225 7.3189 -10.9969 21 1 -0.3407 5.3864 -9.9893 22 6 4.1251 2.4826 -0.0991 23 6 5.5709 2.1375 -0.4614 24 6 4.0951 3.6894 0.8411 25 8 4.5996 4.8383 0.1576 26 6 3.4487 1.2737 0.5811 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.3762 2.2730 -1.8505 31 1 2.5789 0.9667 -2.0797 32 1 2.1027 3.3470 -3.4374 33 1 4.1308 4.9186 -4.6177 34 1 3.0562 5.9933 -3.6912 35 1 2.8759 6.6009 -6.3097 36 1 2.3220 8.4101 -9.0593 37 1 6.0367 2.9923 -0.9517 38 1 6.1243 1.8927 0.4453 39 1 5.5820 1.2813 -1.1360 40 1 3.0695 3.8768 1.1591 41 1 4.7147 3.4850 1.7143 42 1 4.6101 5.6424 0.6948 43 1 3.4300 1.3979 1.6638 44 1 3.9540 0.3470 0.3094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680956998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:33 Heat of formation + Delta-G solvation = -142.467703 kcal Electronic energy + Delta-G solvation = -27447.975727 eV Core-core repulsion = 23401.340359 eV Total energy + Delta-G solvation = -4046.635368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66609 -38.77967 -38.02839 -37.15727 -35.71650 -34.30016 -33.55067 -31.95510 -31.30025 -30.66961 -27.41553 -26.83668 -26.54012 -25.33372 -24.42135 -22.24981 -21.08984 -19.52902 -18.96553 -18.05728 -17.71455 -17.31988 -16.92300 -16.14576 -15.54729 -15.41860 -15.15930 -15.12963 -14.80921 -14.61012 -14.37208 -13.93813 -13.82871 -13.48158 -13.38218 -13.27232 -12.79344 -12.47635 -12.23313 -12.15675 -12.06539 -11.85641 -11.67160 -11.60172 -11.47324 -11.10477 -11.03563 -10.82105 -10.43769 -10.28642 -10.06425 -9.82717 -9.60058 -9.46361 -8.62843 -8.56862 -8.34466 -8.05895 -6.47938 -3.89758 2.66309 3.13833 3.23686 3.28997 3.37335 3.63920 3.81060 4.07886 4.12545 4.18200 4.34700 4.49633 4.66795 4.86065 4.93724 4.97192 5.04045 5.10840 5.20992 5.21440 5.25184 5.37362 5.41581 5.42039 5.56687 5.58898 5.63876 5.70149 5.92583 5.99156 6.10291 6.14693 6.27601 6.50438 6.83147 6.94706 7.31735 7.49128 7.81940 7.96605 8.38095 8.49933 9.06765 9.09082 9.44167 9.92374 10.69103 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003030 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.895798 B = 9237.390631 C =10459.006770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.077 3.923 4 H 0.079 0.921 5 C 0.077 3.923 6 N -0.626 5.626 7 C 0.719 3.281 8 O -0.545 6.545 9 N -0.729 5.729 10 C 0.132 3.868 11 C 0.430 3.570 12 O -0.599 6.599 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.188 3.812 23 C -0.154 4.154 24 C 0.067 3.933 25 O -0.517 6.517 26 C -0.117 4.117 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.357 0.643 43 H 0.087 0.913 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -11.029 20.273 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.018 3.982 4 H 0.097 0.903 5 C -0.048 4.048 6 N -0.367 5.367 7 C 0.420 3.580 8 O -0.419 6.419 9 N -0.388 5.388 10 C 0.004 3.996 11 C 0.216 3.784 12 O -0.485 6.485 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.122 0.878 16 C -0.178 4.178 17 N -0.536 5.536 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C 0.102 3.898 23 C -0.212 4.212 24 C -0.012 4.012 25 O -0.319 6.319 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.240 0.760 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.202 0.798 43 H 0.106 0.894 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.981 -11.372 19.667 22.804 hybrid contribution -0.964 0.757 -0.358 1.277 sum 1.017 -10.615 19.309 22.058 Atomic orbital electron populations 1.22856 0.80524 1.03065 1.00438 1.87910 1.20123 1.26376 1.94811 1.23222 0.94697 0.85130 0.95153 0.90345 1.22708 0.91201 0.93046 0.97810 1.47400 1.32643 1.31372 1.25285 1.15320 0.82926 0.80393 0.79350 1.90953 1.31175 1.45218 1.74552 1.44833 1.35037 1.34988 1.23949 1.20719 0.98732 0.90326 0.89862 1.19822 0.88170 0.85275 0.85165 1.90480 1.39459 1.39696 1.78911 1.41786 1.29384 1.27124 1.20245 1.19719 1.09630 1.14186 0.99830 0.87755 1.25315 0.97865 0.95450 0.99122 1.69617 1.32874 1.16496 1.34572 0.85821 0.79784 0.78781 0.79681 1.20317 1.20821 1.19348 1.20744 0.92688 0.92359 0.83976 1.22117 0.94583 1.02905 1.01601 1.22528 0.97097 0.87866 0.93742 1.87258 1.86743 1.18019 1.39888 1.22752 0.94054 0.98205 1.00475 0.93445 0.89351 0.93879 0.90559 0.90588 0.76050 0.90220 0.90194 0.77023 0.91637 0.89811 0.92220 0.92607 0.94425 0.93564 0.79758 0.89401 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.89 101.05 1.10 1.30 16 2 O -0.37 -3.61 10.51 -35.23 -0.37 -3.98 16 3 C 0.08 0.72 3.49 -24.58 -0.09 0.63 16 4 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 5 C 0.08 0.90 6.31 -2.53 -0.02 0.88 16 6 N -0.63 -8.67 2.82 -161.44 -0.45 -9.13 16 7 C 0.72 12.61 7.90 -86.92 -0.69 11.93 16 8 O -0.54 -10.82 11.93 -19.71 -0.24 -11.05 16 9 N -0.73 -13.31 5.49 -66.42 -0.36 -13.67 16 10 C 0.13 2.58 6.15 -5.20 -0.03 2.55 16 11 C 0.43 10.17 7.85 -10.98 -0.09 10.08 16 12 O -0.60 -15.70 15.24 5.55 0.08 -15.61 16 13 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 15 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 18 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.19 2.13 0.80 -130.84 -0.10 2.03 16 23 C -0.15 -1.80 8.32 37.16 0.31 -1.49 16 24 C 0.07 0.72 5.97 37.16 0.22 0.94 16 25 O -0.52 -7.05 9.15 -60.22 -0.55 -7.61 16 26 C -0.12 -1.00 5.75 -24.89 -0.14 -1.14 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 30 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.40 7.32 5.92 -40.82 -0.24 7.07 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.40 9.67 7.90 -40.82 -0.32 9.34 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.08 1.26 6.59 -51.93 -0.34 0.92 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.36 3.48 9.12 45.56 0.42 3.89 16 43 H 0.09 0.57 7.83 -51.93 -0.41 0.16 16 44 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -33.62 360.22 -6.41 -40.03 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -5.83 Total: 17.60 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 0.24 Total: 19.74 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.15 Total: -60.29 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.07 Total: -38.25 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.62 -6.41 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680956998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.434 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds