Wall clock time and date at job start Fri Apr 10 2020 18:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47243 * 2 1 4 4 C 1.42904 * 114.00048 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46909 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.51502 * 304.90537 * 5 4 3 7 7 C 1.52880 * 109.62349 * 184.90717 * 5 4 3 8 8 N 1.47150 * 108.60692 * 187.90006 * 7 5 4 9 9 C 1.34784 * 120.98021 * 230.50131 * 8 7 5 10 10 O 1.21585 * 119.99853 * 184.69904 * 9 8 7 11 11 N 1.34781 * 119.99811 * 4.70048 * 9 8 7 12 12 C 1.46496 * 119.99528 * 174.91334 * 11 9 8 13 13 C 1.50701 * 109.47061 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99921 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00197 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99752 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00494 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99896 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00147 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46909 * 60.00223 * 20 18 16 22 22 H 1.48503 * 109.46960 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47206 * 300.00040 * 20 18 16 24 24 C 1.47150 * 118.03747 * 50.22817 * 8 7 5 25 25 C 1.53288 * 108.38652 * 309.71472 * 24 8 7 26 26 O 1.42962 * 109.51211 * 65.00371 * 5 4 3 27 27 H 1.08997 * 109.47235 * 299.99368 * 1 2 3 28 28 H 1.09000 * 109.47484 * 59.99485 * 1 2 3 29 29 H 1.09005 * 109.47447 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.46865 * 240.00274 * 2 1 3 31 31 H 1.09005 * 109.47162 * 120.00869 * 2 1 3 32 32 H 1.08998 * 109.46208 * 60.00526 * 4 3 2 33 33 H 1.09000 * 109.47316 * 300.00533 * 4 3 2 34 34 H 1.09004 * 109.61314 * 68.08134 * 7 5 4 35 35 H 1.08996 * 109.52753 * 307.66441 * 7 5 4 36 36 H 0.96996 * 120.00174 * 354.91135 * 11 9 8 37 37 H 1.09006 * 109.47277 * 60.00265 * 12 11 9 38 38 H 1.09004 * 109.47613 * 299.99989 * 12 11 9 39 39 H 0.97002 * 119.99904 * 0.02562 * 15 13 12 40 40 H 0.96998 * 119.99745 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.67790 * 69.44218 * 24 8 7 42 42 H 1.09006 * 109.68184 * 189.94983 * 24 8 7 43 43 H 1.08997 * 109.51306 * 172.21976 * 25 24 8 44 44 H 1.09001 * 109.51176 * 292.38026 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3515 3.4419 -0.8414 7 6 5.3440 3.0645 -0.1214 8 7 5.7150 4.4752 0.0720 9 6 6.5155 5.1090 -0.8080 10 8 6.8801 6.2477 -0.5873 11 7 6.9115 4.4805 -1.9325 12 6 7.6884 5.2048 -2.9415 13 6 8.0025 4.2824 -4.0911 14 8 7.6151 3.1332 -4.0699 15 7 8.7131 4.7347 -5.1433 16 6 8.9983 3.8957 -6.1893 17 1 8.6534 2.8724 -6.1705 18 6 9.7313 4.3618 -7.2738 19 7 10.1515 5.6068 -7.2966 20 14 10.1206 3.2185 -8.6988 21 1 8.8544 2.7327 -9.3038 22 1 10.9087 3.9525 -9.7213 23 1 10.9088 2.0613 -8.2039 24 6 5.1815 5.1754 1.2512 25 6 3.6665 4.9479 1.3041 26 8 3.3978 3.5461 1.2225 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.8339 0.9764 -0.8892 33 1 3.8333 0.9766 0.8907 34 1 5.6599 2.7341 -1.1109 35 1 5.8233 2.4510 0.6414 36 1 6.6822 3.5486 -2.0738 37 1 8.6181 5.5610 -2.4975 38 1 7.1101 6.0545 -3.3045 39 1 9.0226 5.6538 -5.1604 40 1 10.6635 5.9320 -8.0535 41 1 5.6442 4.7780 2.1546 42 1 5.3906 6.2421 1.1705 43 1 3.2719 5.3402 2.2413 44 1 3.1921 5.4588 0.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:40 Heat of formation + Delta-G solvation = -146.840955 kcal Electronic energy + Delta-G solvation = -26494.544084 eV Core-core repulsion = 22447.719078 eV Total energy + Delta-G solvation = -4046.825006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.61884 -39.04918 -38.23318 -37.75670 -34.78833 -34.55275 -33.77647 -32.85165 -31.40970 -31.07704 -28.97690 -27.18970 -25.95845 -24.57814 -23.15670 -23.03796 -21.63762 -19.77420 -19.67986 -18.52250 -17.94278 -17.18240 -16.98922 -16.23173 -15.90600 -15.82162 -15.65955 -15.39390 -15.13714 -14.65140 -14.52949 -14.39158 -14.02747 -13.68342 -13.55946 -13.47193 -13.28186 -12.84614 -12.46155 -12.21962 -11.96545 -11.87905 -11.75748 -11.64987 -11.61096 -11.26544 -11.12454 -10.88523 -10.52710 -10.34527 -10.32236 -10.03375 -9.86735 -9.65090 -8.98217 -8.66169 -8.50196 -8.12557 -6.53485 -3.95732 2.49069 3.11744 3.19954 3.20675 3.23638 3.31291 3.45235 3.71935 3.91392 4.11905 4.52465 4.61913 4.71964 4.76211 4.82437 4.84655 4.92276 4.98752 5.05698 5.10343 5.15056 5.18008 5.23680 5.28086 5.39857 5.54588 5.56270 5.63172 5.73061 5.83249 5.86344 5.96851 6.04365 6.26720 6.67600 6.85561 6.88425 6.96529 7.43639 7.89562 8.04142 8.42359 8.66468 9.02052 9.36747 9.84395 10.63263 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002766 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.141629 B =10120.453219 C =11917.131318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.072 3.928 5 C 0.081 3.919 6 H 0.074 0.926 7 C 0.084 3.916 8 N -0.634 5.634 9 C 0.711 3.289 10 O -0.591 6.591 11 N -0.724 5.724 12 C 0.127 3.873 13 C 0.428 3.572 14 O -0.600 6.600 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.096 3.904 25 C 0.048 3.952 26 O -0.368 6.368 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.405 0.595 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 -6.001 16.000 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.005 4.005 5 C 0.022 3.978 6 H 0.092 0.908 7 C -0.040 4.040 8 N -0.373 5.373 9 C 0.412 3.588 10 O -0.470 6.470 11 N -0.383 5.383 12 C -0.001 4.001 13 C 0.214 3.786 14 O -0.487 6.487 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.027 4.027 25 C -0.030 4.030 26 O -0.287 6.287 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.975 -5.742 16.104 22.082 hybrid contribution 0.697 -0.478 -1.065 1.359 sum -13.278 -6.219 15.039 21.004 Atomic orbital electron populations 1.21734 0.93725 1.02165 1.03205 1.22477 0.95684 0.83731 1.00141 1.87935 1.20247 1.26361 1.95443 1.22406 0.82347 0.94318 1.01468 1.22327 0.93149 0.93551 0.88755 0.90807 1.22124 0.95057 0.83229 1.03638 1.47151 1.52351 1.11567 1.26203 1.15700 0.79046 0.84233 0.79779 1.90900 1.61040 1.17622 1.77414 1.44944 1.58388 1.16206 1.18786 1.20820 0.96547 0.94461 0.88321 1.19730 0.85089 0.88781 0.85025 1.90478 1.58143 1.19255 1.80783 1.41780 1.46124 1.14025 1.16293 1.19675 1.32109 0.95968 0.95785 0.87724 1.25334 0.96535 0.96612 0.99213 1.69609 1.36631 1.14792 1.32371 0.85866 0.78698 0.79503 0.79861 1.19762 1.20835 1.19777 1.22165 0.93768 0.99698 0.87116 1.23032 0.94464 0.82428 1.03059 1.88004 1.81631 1.21802 1.37226 0.91834 0.91822 0.91145 0.93259 0.93363 0.91131 0.92102 0.88603 0.90183 0.75460 0.89839 0.89996 0.76981 0.91498 0.90920 0.87818 0.87481 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.21 10.31 -39.98 -0.41 -4.62 16 4 C 0.07 0.68 5.61 37.15 0.21 0.89 16 5 C 0.08 0.87 3.04 -26.80 -0.08 0.79 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.08 0.91 5.90 -3.75 -0.02 0.89 16 8 N -0.63 -8.35 3.03 -178.26 -0.54 -8.89 16 9 C 0.71 11.88 8.31 -86.91 -0.72 11.16 16 10 O -0.59 -11.58 15.84 5.29 0.08 -11.50 16 11 N -0.72 -12.37 5.44 -66.41 -0.36 -12.73 16 12 C 0.13 2.36 6.16 -5.20 -0.03 2.33 16 13 C 0.43 9.73 7.85 -10.98 -0.09 9.65 16 14 O -0.60 -15.07 15.24 5.55 0.08 -14.98 16 15 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 16 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 17 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 19 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16 20 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.10 1.05 6.62 -3.54 -0.02 1.02 16 25 C 0.05 0.46 6.99 37.31 0.26 0.72 16 26 O -0.37 -4.22 10.35 -39.98 -0.41 -4.63 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 1.05 5.67 -51.93 -0.29 0.76 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.41 6.71 4.95 -40.82 -0.20 6.50 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 40 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.21 7.12 -51.93 -0.37 0.84 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -32.72 367.10 -7.11 -39.83 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.62 Total: 13.51 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: -0.11 Total: 19.67 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.23 Total: -58.15 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.66 Total: -35.73 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.72 -7.11 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.008 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds