Wall clock time and date at job start Fri Apr 10 2020 18:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99862 * 2 1 4 4 C 1.52999 * 109.47062 * 179.97438 * 3 2 1 5 5 C 1.53006 * 110.38521 * 57.77079 * 4 3 2 6 6 O 1.42901 * 109.46955 * 302.22828 * 5 4 3 7 7 C 1.54283 * 110.34306 * 180.02562 * 4 3 2 8 8 C 1.54391 * 105.05272 * 118.81938 * 7 4 3 9 9 N 1.48317 * 104.53792 * 336.26252 * 8 7 4 10 10 C 1.34769 * 127.77054 * 219.51516 * 9 8 7 11 11 O 1.21585 * 120.00443 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00046 * 359.93336 * 10 9 8 13 13 C 1.46497 * 120.00091 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46950 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00000 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99732 * 180.02562 * 14 13 12 17 17 C 1.37093 * 119.99800 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99894 * 0.02562 * 17 16 14 19 19 C 1.38955 * 120.00139 * 179.97438 * 17 16 14 20 20 N 1.31405 * 119.99974 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99753 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47257 * 89.99660 * 21 19 17 23 23 H 1.48497 * 109.46695 * 209.99891 * 21 19 17 24 24 H 1.48507 * 109.47096 * 329.99413 * 21 19 17 25 25 C 1.48146 * 104.39133 * 39.45765 * 9 8 7 26 26 H 1.09000 * 109.47079 * 59.99928 * 1 2 3 27 27 H 1.09005 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47115 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.46866 * 59.99739 * 3 2 1 30 30 H 1.08997 * 109.47055 * 299.99802 * 3 2 1 31 31 H 1.08996 * 109.47103 * 62.23335 * 5 4 3 32 32 H 1.09004 * 109.46596 * 182.22864 * 5 4 3 33 33 H 0.96701 * 113.99730 * 179.97438 * 6 5 4 34 34 H 1.09002 * 110.34406 * 237.74521 * 7 4 3 35 35 H 1.09000 * 110.34365 * 359.89689 * 7 4 3 36 36 H 1.09000 * 110.40460 * 94.96891 * 8 7 4 37 37 H 1.08992 * 110.40933 * 217.40455 * 8 7 4 38 38 H 0.96999 * 119.99439 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47349 * 299.99368 * 13 12 10 40 40 H 1.09003 * 109.47038 * 59.99826 * 13 12 10 41 41 H 0.97003 * 120.00144 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99797 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.40949 * 201.69443 * 25 9 8 44 44 H 1.09000 * 110.50841 * 79.31045 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0069 0.3799 -1.2123 6 8 3.3954 -0.9116 -1.1939 7 6 4.1843 2.5844 0.0013 8 6 5.0044 2.6456 1.3080 9 7 4.3581 1.6525 2.2000 10 6 4.1287 1.7582 3.5239 11 8 3.5832 0.8502 4.1208 12 7 4.5048 2.8700 4.1864 13 6 4.2560 2.9846 5.6255 14 6 4.7684 4.3130 6.1196 15 8 5.2905 5.0874 5.3459 16 7 4.6474 4.6398 7.4216 17 6 5.1140 5.8480 7.8712 18 1 5.5782 6.5379 7.1820 19 6 4.9889 6.1852 9.2134 20 7 5.4366 7.3430 9.6444 21 14 4.1854 4.9921 10.4051 22 1 5.2201 4.0972 10.9827 23 1 3.5236 5.7523 11.4957 24 1 3.1735 4.1785 9.6843 25 6 4.0207 0.5198 1.3068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.7254 0.9022 -2.1266 32 1 5.0907 0.2694 -1.1759 33 1 3.6491 -1.4775 -1.9358 34 1 4.8390 2.6991 -0.8627 35 1 3.4165 3.3580 -0.0007 36 1 6.0414 2.3679 1.1191 37 1 4.9505 3.6429 1.7443 38 1 4.9409 3.5940 3.7103 39 1 3.1850 2.9145 5.8158 40 1 4.7716 2.1793 6.1486 41 1 4.2302 4.0203 8.0405 42 1 5.3495 7.5783 10.5814 43 1 3.2259 -0.0849 1.7434 44 1 4.9023 -0.0924 1.1169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:53 Heat of formation + Delta-G solvation = -141.866276 kcal Electronic energy + Delta-G solvation = -26872.746644 eV Core-core repulsion = 22826.137356 eV Total energy + Delta-G solvation = -4046.609288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.52097 -39.11365 -38.22499 -37.11769 -36.32694 -34.48496 -33.72723 -32.60578 -31.78511 -29.68323 -28.16763 -27.24142 -25.72301 -25.51035 -24.04208 -23.09675 -19.90630 -19.67306 -19.53081 -18.80548 -17.94704 -17.33451 -16.56714 -16.28492 -16.03024 -15.90427 -15.53364 -15.33440 -15.01592 -14.82884 -14.38778 -14.25274 -13.96088 -13.74628 -13.15443 -13.12016 -12.86723 -12.69052 -12.50941 -12.36220 -12.15354 -12.06902 -11.93226 -11.55428 -11.38477 -11.22827 -11.19785 -10.78160 -10.63389 -10.16348 -10.06656 -10.02154 -9.70518 -9.69301 -9.00655 -8.76173 -8.52475 -8.29879 -6.40513 -3.92977 2.61305 3.00683 3.05490 3.13361 3.31796 3.51641 3.58690 3.82295 4.03980 4.09426 4.25958 4.50039 4.58059 4.66685 4.83005 4.91368 5.01566 5.07512 5.10174 5.14785 5.22048 5.28660 5.34844 5.39355 5.45120 5.53589 5.59458 5.64513 5.72176 5.76252 5.81657 5.87795 5.95076 6.17833 6.66962 7.06917 7.17092 7.45472 7.46905 8.00736 8.14778 8.44929 8.76077 8.82049 9.30377 9.64139 10.71658 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.002545 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.015288 B =11000.068989 C =11455.896473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.080 3.920 4 C -0.072 4.072 5 C 0.096 3.904 6 O -0.546 6.546 7 C -0.122 4.122 8 C 0.099 3.901 9 N -0.645 5.645 10 C 0.729 3.271 11 O -0.593 6.593 12 N -0.724 5.724 13 C 0.126 3.874 14 C 0.439 3.561 15 O -0.580 6.580 16 N -0.576 5.576 17 C -0.310 4.310 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.266 1.266 25 C 0.146 3.854 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.370 0.630 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.407 0.593 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.375 0.625 42 H 0.275 0.725 43 H 0.093 0.907 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -13.891 -22.638 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.003 3.997 4 C -0.074 4.074 5 C 0.017 3.983 6 O -0.349 6.349 7 C -0.160 4.160 8 C -0.024 4.024 9 N -0.384 5.384 10 C 0.431 3.569 11 O -0.471 6.471 12 N -0.382 5.382 13 C -0.003 4.003 14 C 0.225 3.775 15 O -0.464 6.464 16 N -0.214 5.214 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.514 5.514 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C 0.022 3.978 26 H 0.053 0.947 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.216 0.784 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.245 0.755 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.208 0.792 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.368 -13.766 -21.790 26.327 hybrid contribution -0.338 -0.242 0.338 0.536 sum -5.706 -14.008 -21.451 26.248 Atomic orbital electron populations 1.22705 0.82029 1.02487 0.99400 1.88095 1.18361 1.26193 1.95117 1.22410 0.91878 0.85622 0.99806 1.21594 0.94659 0.95367 0.95741 1.22076 0.95593 0.84784 0.95823 1.86751 1.71646 1.25423 1.51116 1.22526 0.99928 0.95293 0.98283 1.22388 0.96632 0.93805 0.89593 1.48048 1.63994 1.20590 1.05764 1.15233 0.79252 0.82789 0.79644 1.90915 1.49471 1.40383 1.66358 1.44761 1.65031 1.19321 1.09113 1.20812 1.01637 0.97215 0.80597 1.19650 0.85879 0.88600 0.83329 1.90524 1.48669 1.52434 1.54818 1.42116 1.53705 1.18174 1.07413 1.19435 1.36443 0.93189 0.94749 0.86101 1.25064 0.97345 0.96519 0.96983 1.69616 1.44766 1.20563 1.16435 0.86670 0.80010 0.81149 0.81679 1.19374 1.20001 1.19180 1.22049 1.00814 0.88049 0.86841 0.94693 0.89795 0.94463 0.93251 0.93612 0.93702 0.93474 0.78439 0.89529 0.90075 0.90756 0.89828 0.75511 0.89909 0.89845 0.79206 0.91396 0.88822 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.36 -4.15 8.02 -57.53 -0.46 -4.61 16 3 C 0.08 0.80 4.60 37.16 0.17 0.97 16 4 C -0.07 -0.65 0.73 -153.11 -0.11 -0.76 16 5 C 0.10 0.67 5.64 37.16 0.21 0.88 16 6 O -0.55 -4.60 11.35 -57.53 -0.65 -5.26 16 7 C -0.12 -0.88 6.30 -25.33 -0.16 -1.04 16 8 C 0.10 0.95 6.92 -2.31 -0.02 0.93 16 9 N -0.65 -8.59 3.32 -174.88 -0.58 -9.17 16 10 C 0.73 12.48 8.57 -86.92 -0.74 11.74 16 11 O -0.59 -12.13 16.61 5.29 0.09 -12.04 16 12 N -0.72 -12.37 5.50 -66.41 -0.37 -12.74 16 13 C 0.13 2.28 6.15 -5.19 -0.03 2.25 16 14 C 0.44 9.79 7.85 -10.98 -0.09 9.70 16 15 O -0.58 -14.69 15.24 5.55 0.08 -14.60 16 16 N -0.58 -13.53 5.09 -10.96 -0.06 -13.58 16 17 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -25.02 13.96 55.50 0.77 -24.25 16 21 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 25 C 0.15 1.75 5.87 -2.41 -0.01 1.73 16 26 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.27 8.10 -51.93 -0.42 -0.15 16 33 H 0.37 1.50 9.12 45.56 0.42 1.92 16 34 H 0.09 0.42 7.71 -51.93 -0.40 0.02 16 35 H 0.08 0.57 7.71 -51.93 -0.40 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.82 6.87 -51.93 -0.36 0.46 16 38 H 0.41 6.76 5.84 -40.82 -0.24 6.52 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 42 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.09 1.40 7.17 -51.93 -0.37 1.03 16 44 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -35.59 361.94 -6.12 -41.72 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -5.78 Total: 14.46 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 0.08 Total: 20.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.23 Total: -59.74 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.94 Total: -36.52 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.59 -6.12 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.150 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds