Wall clock time and date at job start Fri Apr 10 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99862 * 2 1 4 4 C 1.52999 * 109.47062 * 179.97438 * 3 2 1 5 5 C 1.53006 * 110.38521 * 57.77079 * 4 3 2 6 6 O 1.42901 * 109.46955 * 302.22828 * 5 4 3 7 7 C 1.54283 * 110.34306 * 180.02562 * 4 3 2 8 8 C 1.54391 * 105.05272 * 118.81938 * 7 4 3 9 9 N 1.48317 * 104.53792 * 336.26252 * 8 7 4 10 10 C 1.34769 * 127.77054 * 219.51516 * 9 8 7 11 11 O 1.21585 * 120.00443 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00046 * 359.93336 * 10 9 8 13 13 C 1.46497 * 120.00091 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46950 * 179.97438 * 13 12 10 15 15 O 1.21289 * 120.00000 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99732 * 180.02562 * 14 13 12 17 17 C 1.37093 * 119.99800 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99894 * 0.02562 * 17 16 14 19 19 C 1.38955 * 120.00139 * 179.97438 * 17 16 14 20 20 N 1.31405 * 119.99974 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99753 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47257 * 89.99660 * 21 19 17 23 23 H 1.48497 * 109.46695 * 209.99891 * 21 19 17 24 24 H 1.48507 * 109.47096 * 329.99413 * 21 19 17 25 25 C 1.48146 * 104.39133 * 39.45765 * 9 8 7 26 26 H 1.09000 * 109.47079 * 59.99928 * 1 2 3 27 27 H 1.09005 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47115 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.46866 * 59.99739 * 3 2 1 30 30 H 1.08997 * 109.47055 * 299.99802 * 3 2 1 31 31 H 1.08996 * 109.47103 * 62.23335 * 5 4 3 32 32 H 1.09004 * 109.46596 * 182.22864 * 5 4 3 33 33 H 0.96701 * 113.99730 * 179.97438 * 6 5 4 34 34 H 1.09002 * 110.34406 * 237.74521 * 7 4 3 35 35 H 1.09000 * 110.34365 * 359.89689 * 7 4 3 36 36 H 1.09000 * 110.40460 * 94.96891 * 8 7 4 37 37 H 1.08992 * 110.40933 * 217.40455 * 8 7 4 38 38 H 0.96999 * 119.99439 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47349 * 299.99368 * 13 12 10 40 40 H 1.09003 * 109.47038 * 59.99826 * 13 12 10 41 41 H 0.97003 * 120.00144 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99797 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.40949 * 201.69443 * 25 9 8 44 44 H 1.09000 * 110.50841 * 79.31045 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0069 0.3799 -1.2123 6 8 3.3954 -0.9116 -1.1939 7 6 4.1843 2.5844 0.0013 8 6 5.0044 2.6456 1.3080 9 7 4.3581 1.6525 2.2000 10 6 4.1287 1.7582 3.5239 11 8 3.5832 0.8502 4.1208 12 7 4.5048 2.8700 4.1864 13 6 4.2560 2.9846 5.6255 14 6 4.7684 4.3130 6.1196 15 8 5.2905 5.0874 5.3459 16 7 4.6474 4.6398 7.4216 17 6 5.1140 5.8480 7.8712 18 1 5.5782 6.5379 7.1820 19 6 4.9889 6.1852 9.2134 20 7 5.4366 7.3430 9.6444 21 14 4.1854 4.9921 10.4051 22 1 5.2201 4.0972 10.9827 23 1 3.5236 5.7523 11.4957 24 1 3.1735 4.1785 9.6843 25 6 4.0207 0.5198 1.3068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.7254 0.9022 -2.1266 32 1 5.0907 0.2694 -1.1759 33 1 3.6491 -1.4775 -1.9358 34 1 4.8390 2.6991 -0.8627 35 1 3.4165 3.3580 -0.0007 36 1 6.0414 2.3679 1.1191 37 1 4.9505 3.6429 1.7443 38 1 4.9409 3.5940 3.7103 39 1 3.1850 2.9145 5.8158 40 1 4.7716 2.1793 6.1486 41 1 4.2302 4.0203 8.0405 42 1 5.3495 7.5783 10.5814 43 1 3.2259 -0.0849 1.7434 44 1 4.9023 -0.0924 1.1169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:52 Heat of formation + Delta-G solvation = -171.961631 kcal Electronic energy + Delta-G solvation = -26874.051677 eV Core-core repulsion = 22826.137356 eV Total energy + Delta-G solvation = -4047.914321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59213 -40.52027 -39.66136 -37.96644 -37.00327 -36.30306 -35.35154 -33.86343 -33.49544 -30.45869 -29.64582 -28.01535 -26.94964 -26.26594 -25.63071 -23.92499 -21.50645 -21.16059 -20.58620 -20.29643 -19.26174 -18.00041 -17.59335 -17.41538 -17.10661 -17.06486 -16.77594 -16.71344 -16.45356 -15.99211 -15.78653 -15.28265 -14.95644 -14.88125 -14.74217 -14.33898 -14.11628 -13.97275 -13.72443 -13.48162 -13.41902 -13.06841 -12.96816 -12.81279 -12.45435 -12.25597 -12.09153 -12.00939 -11.92721 -11.59194 -11.44888 -11.40565 -10.67710 -10.66130 -10.47915 -10.39129 -10.31309 -9.62920 -8.46337 -6.08116 1.30557 1.33605 1.40215 1.44711 1.76665 2.03837 2.19731 2.67893 2.81917 3.02967 3.09936 3.29365 3.53207 3.79935 3.96623 4.00488 4.16332 4.24860 4.34040 4.38551 4.40078 4.44016 4.51034 4.57270 4.60196 4.64756 4.67236 4.81078 4.85046 4.90380 4.95012 4.98700 5.13956 5.25245 5.32558 5.48340 5.86840 5.97907 6.33380 6.47724 6.76738 6.88418 7.14728 7.26734 7.44606 7.76127 8.69961 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.002545 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.015288 B =11000.068989 C =11455.896473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.381 6.381 3 C 0.078 3.922 4 C -0.069 4.069 5 C 0.098 3.902 6 O -0.573 6.573 7 C -0.111 4.111 8 C 0.092 3.908 9 N -0.644 5.644 10 C 0.725 3.275 11 O -0.632 6.632 12 N -0.724 5.724 13 C 0.137 3.863 14 C 0.448 3.552 15 O -0.613 6.613 16 N -0.577 5.577 17 C -0.330 4.330 18 H 0.065 0.935 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.234 1.234 25 C 0.145 3.855 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.388 0.612 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.409 0.591 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.057 0.943 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 -15.605 -23.991 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.299 6.299 3 C 0.001 3.999 4 C -0.070 4.070 5 C 0.020 3.980 6 O -0.379 6.379 7 C -0.149 4.149 8 C -0.030 4.030 9 N -0.382 5.382 10 C 0.427 3.573 11 O -0.514 6.514 12 N -0.383 5.383 13 C 0.009 3.991 14 C 0.235 3.765 15 O -0.499 6.499 16 N -0.217 5.217 17 C -0.459 4.459 18 H 0.083 0.917 19 C -0.207 4.207 20 N -0.564 5.564 21 Si 0.777 3.223 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.158 1.158 25 C 0.023 3.977 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.236 0.764 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.893 -15.489 -23.218 28.525 hybrid contribution -0.129 0.321 0.614 0.705 sum -6.022 -15.168 -22.604 27.879 Atomic orbital electron populations 1.22817 0.81133 1.03202 0.99832 1.88071 1.19535 1.27110 1.95204 1.22490 0.92703 0.85127 0.99580 1.21638 0.93978 0.96446 0.94951 1.22126 0.96374 0.84254 0.95295 1.86706 1.72301 1.26368 1.52542 1.22538 1.00134 0.94136 0.98123 1.22703 0.97874 0.92623 0.89811 1.48122 1.63233 1.21949 1.04886 1.15341 0.79069 0.82117 0.80788 1.90878 1.51258 1.41527 1.67699 1.44697 1.65290 1.19566 1.08718 1.20705 1.02477 0.94531 0.81393 1.20399 0.84015 0.89472 0.82625 1.90511 1.49645 1.53991 1.55706 1.41918 1.54296 1.17277 1.08212 1.19032 1.37912 0.94311 0.94687 0.91679 1.26039 0.97422 0.98572 0.98654 1.69771 1.46200 1.23072 1.17383 0.85464 0.79673 0.78628 0.78497 1.18092 1.19756 1.15762 1.22123 1.00054 0.87756 0.87800 0.93002 0.89043 0.95223 0.95607 0.91571 0.91555 0.91760 0.76412 0.85959 0.89784 0.88770 0.90274 0.75269 0.88303 0.88099 0.77246 0.90893 0.92455 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.38 -8.57 8.02 -127.66 -1.02 -9.59 16 3 C 0.08 1.48 4.60 71.98 0.33 1.81 16 4 C -0.07 -1.09 0.73 -51.27 -0.04 -1.13 16 5 C 0.10 1.06 5.64 71.98 0.41 1.47 16 6 O -0.57 -8.50 11.35 -127.66 -1.45 -9.95 16 7 C -0.11 -1.28 6.30 31.50 0.20 -1.08 16 8 C 0.09 1.57 6.92 86.50 0.60 2.17 16 9 N -0.64 -16.66 3.32 -825.46 -2.74 -19.40 16 10 C 0.72 24.59 8.57 179.06 1.53 26.13 16 11 O -0.63 -25.93 16.61 -3.99 -0.07 -26.00 16 12 N -0.72 -24.30 5.50 -482.29 -2.65 -26.96 16 13 C 0.14 4.81 6.15 85.63 0.53 5.34 16 14 C 0.45 19.87 7.85 87.66 0.69 20.56 16 15 O -0.61 -31.66 15.24 -3.06 -0.05 -31.71 16 16 N -0.58 -26.88 5.09 -306.97 -1.56 -28.44 16 17 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 18 H 0.07 4.35 7.39 -2.91 -0.02 4.33 16 19 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 20 N -0.92 -54.31 13.96 21.66 0.30 -54.01 16 21 Si 0.96 38.46 27.74 68.60 1.90 40.36 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 25 C 0.15 3.39 5.87 86.53 0.51 3.90 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.49 8.10 -2.39 -0.02 0.47 16 33 H 0.39 2.30 9.12 -74.06 -0.68 1.63 16 34 H 0.12 0.60 7.71 -2.39 -0.02 0.58 16 35 H 0.08 0.96 7.71 -2.39 -0.02 0.94 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.44 6.87 -2.39 -0.02 1.42 16 38 H 0.41 13.44 5.84 -92.71 -0.54 12.90 16 39 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 42 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.06 1.77 7.17 -2.39 -0.02 1.75 16 44 H 0.08 1.65 7.83 -2.39 -0.02 1.63 16 Total: -1.00 -81.52 361.94 -0.78 -82.30 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.76 Total: 40.38 kcal Atomic # 6 Polarization: 35.69 SS G_CDS: 7.32 Total: 43.02 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -6.65 Total: -128.80 kcal Atomic # 8 Polarization: -74.67 SS G_CDS: -2.59 Total: -77.25 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Total: -81.52 -0.78 -82.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.667 kcal (2) G-P(sol) polarization free energy of solvation -81.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds