Wall clock time and date at job start Fri Apr 10 2020 18:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46766 * 2 1 4 4 C 1.34638 * 116.99976 * 179.97438 * 3 2 1 5 5 O 1.21511 * 119.99767 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00154 * 180.02562 * 4 3 2 7 7 C 1.47026 * 125.65100 * 180.02562 * 6 4 3 8 8 C 1.54316 * 107.27365 * 180.79395 * 7 6 4 9 9 H 1.09002 * 110.72355 * 263.82891 * 8 7 6 10 10 C 1.53001 * 110.72168 * 140.73218 * 8 7 6 11 11 O 1.42899 * 109.46838 * 66.45641 * 10 8 7 12 12 C 1.55160 * 102.94268 * 22.19228 * 8 7 6 13 13 H 1.09002 * 111.00329 * 206.42655 * 12 8 7 14 14 N 1.46496 * 111.00726 * 82.61262 * 12 8 7 15 15 C 1.34770 * 120.00229 * 154.99932 * 14 12 8 16 16 O 1.21588 * 120.00051 * 359.97438 * 15 14 12 17 17 N 1.34774 * 119.99971 * 180.02562 * 15 14 12 18 18 C 1.46499 * 120.00198 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47440 * 179.97438 * 18 17 15 20 20 H 1.07994 * 119.99799 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00470 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99811 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46918 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47140 * 120.00217 * 23 21 19 26 26 H 1.48501 * 109.46793 * 240.00259 * 23 21 19 27 27 C 1.47425 * 125.64767 * 359.69215 * 6 4 3 28 28 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47281 * 299.99564 * 1 2 3 30 30 H 1.09003 * 109.47376 * 59.99763 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00718 * 2 1 3 32 32 H 1.08993 * 109.47028 * 120.00618 * 2 1 3 33 33 H 1.09004 * 109.87531 * 300.21113 * 7 6 4 34 34 H 1.08996 * 109.88343 * 61.21833 * 7 6 4 35 35 H 1.08999 * 109.47085 * 186.45250 * 10 8 7 36 36 H 1.08992 * 109.47027 * 306.45142 * 10 8 7 37 37 H 0.96701 * 114.00027 * 180.02562 * 11 10 8 38 38 H 0.97001 * 119.99335 * 334.99902 * 14 12 8 39 39 H 0.97001 * 120.00280 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47094 * 300.00018 * 18 17 15 41 41 H 1.09001 * 109.47134 * 59.99258 * 18 17 15 42 42 H 0.96990 * 120.00285 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.36478 * 274.97629 * 27 6 4 44 44 H 1.08998 * 110.36859 * 37.30006 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5455 0.0005 5 8 4.0889 0.5819 0.0005 6 7 3.8638 2.7909 0.0011 7 6 5.2953 3.1262 0.0012 8 6 5.4055 4.6652 0.0223 9 1 5.5390 5.0563 -0.9864 10 6 6.5521 5.1135 0.9307 11 8 7.7972 4.6964 0.3671 12 6 4.0355 5.1037 0.6041 13 1 3.7702 6.1056 0.2662 14 7 4.0383 5.0296 2.0671 15 6 3.1975 5.8025 2.7827 16 8 2.4370 6.5618 2.2139 17 7 3.2005 5.7346 4.1287 18 6 2.2862 6.5744 4.9065 19 6 2.4877 6.3090 6.3762 20 1 3.2236 5.5873 6.6986 21 6 1.7334 6.9884 7.3092 22 7 0.8376 7.8677 6.9167 23 14 1.9838 6.6599 9.1311 24 1 3.0434 5.6346 9.3081 25 1 2.3931 7.9162 9.8089 26 1 0.7144 6.1682 9.7243 27 6 3.0851 4.0427 -0.0053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.7738 2.7080 0.8868 34 1 5.7687 2.7306 -0.8974 35 1 6.5402 6.1996 1.0218 36 1 6.4310 4.6650 1.9167 37 1 8.5700 4.9469 0.8917 38 1 4.6453 4.4241 2.5208 39 1 3.8074 5.1291 4.5825 40 1 2.4888 7.6244 4.6954 41 1 1.2571 6.3410 4.6333 42 1 0.3073 8.3458 7.5730 43 1 2.8149 4.3162 -1.0252 44 1 2.1912 3.9366 0.6094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682122096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:59 Heat of formation + Delta-G solvation = -185.985851 kcal Electronic energy + Delta-G solvation = -27007.791508 eV Core-core repulsion = 22959.269051 eV Total energy + Delta-G solvation = -4048.522456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94581 -41.02621 -39.65652 -37.71630 -37.23186 -36.12313 -35.14779 -34.28905 -32.95227 -32.07191 -30.17363 -28.81479 -27.13805 -25.01950 -24.35890 -23.60447 -22.26309 -21.63119 -21.07045 -20.06430 -19.13389 -18.44988 -18.13887 -18.01037 -17.80224 -17.35555 -16.79664 -16.41120 -16.19364 -15.73384 -15.54986 -15.16962 -15.04853 -14.88510 -14.50708 -14.19758 -14.02327 -13.90703 -13.70526 -13.53326 -13.45988 -12.96068 -12.86904 -12.76313 -12.65458 -12.52052 -12.35494 -12.21128 -11.98238 -11.82686 -11.57960 -11.42891 -11.23059 -10.87648 -10.79913 -10.41953 -9.91218 -9.57121 -8.27256 -6.42850 0.96800 1.44341 1.45110 1.57975 1.59896 1.81457 2.23344 2.39858 2.76835 3.01570 3.08137 3.39757 3.45278 3.52255 3.98213 4.03401 4.05720 4.11854 4.29262 4.30267 4.35836 4.50986 4.56169 4.61757 4.66217 4.72842 4.85318 4.88330 4.99916 5.04587 5.08690 5.14023 5.31091 5.33834 5.50387 5.50700 5.67702 5.87443 6.20438 6.21723 6.69143 6.90688 7.07579 7.25206 7.28915 7.72193 8.85042 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.003456 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.738635 B = 8099.518483 C = 9726.388511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 O -0.375 6.375 4 C 0.660 3.340 5 O -0.604 6.604 6 N -0.599 5.599 7 C 0.135 3.865 8 C -0.089 4.089 9 H 0.129 0.871 10 C 0.091 3.909 11 O -0.585 6.585 12 C 0.161 3.839 13 H 0.119 0.881 14 N -0.724 5.724 15 C 0.697 3.303 16 O -0.638 6.638 17 N -0.724 5.724 18 C 0.286 3.714 19 C -0.554 4.554 20 H 0.081 0.919 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.982 3.018 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.280 1.280 27 C 0.093 3.907 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.400 0.600 38 H 0.405 0.595 39 H 0.402 0.598 40 H -0.010 1.010 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.106 0.894 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -11.758 -14.927 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 O -0.289 6.289 4 C 0.415 3.585 5 O -0.496 6.496 6 N -0.339 5.339 7 C 0.014 3.986 8 C -0.108 4.108 9 H 0.147 0.853 10 C 0.013 3.987 11 O -0.394 6.394 12 C 0.054 3.946 13 H 0.136 0.864 14 N -0.381 5.381 15 C 0.397 3.603 16 O -0.520 6.520 17 N -0.377 5.377 18 C 0.163 3.837 19 C -0.592 4.592 20 H 0.099 0.901 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.805 3.195 24 H -0.179 1.179 25 H -0.204 1.204 26 H -0.206 1.206 27 C -0.030 4.030 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.242 0.758 39 H 0.237 0.763 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.695 -11.605 -15.809 21.453 hybrid contribution 0.467 -0.310 1.740 1.828 sum 9.162 -11.916 -14.069 20.588 Atomic orbital electron populations 1.21851 0.90483 1.04587 1.03455 1.23236 0.96434 0.77530 1.02734 1.86299 1.21229 1.34828 1.86586 1.17683 0.81409 0.83027 0.76337 1.90961 1.60667 1.39960 1.58022 1.47167 1.08846 1.02743 1.75167 1.22023 0.77929 0.95351 1.03256 1.22524 0.92461 0.93182 1.02649 0.85256 1.21960 0.83010 0.98970 0.94801 1.86398 1.16528 1.82508 1.53929 1.21922 0.94167 0.99923 0.78568 0.86365 1.44885 1.42092 1.44921 1.06230 1.16194 0.81092 0.80898 0.82086 1.90859 1.45322 1.44796 1.71047 1.45326 1.42847 1.45575 1.03963 1.18400 0.87090 0.88486 0.89704 1.21625 1.22277 1.24644 0.90619 0.90082 1.25994 0.94193 0.94230 1.04933 1.70132 1.23822 1.26409 1.36408 0.85154 0.78370 0.78378 0.77555 1.17872 1.20398 1.20610 1.22946 0.94988 0.82380 1.02720 0.87446 0.92140 0.91138 0.90706 0.91606 0.91185 0.90234 0.91947 0.92829 0.74934 0.75813 0.76281 0.99200 0.99649 0.92269 0.87641 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.07 1.54 6.19 71.98 0.45 1.98 16 3 O -0.38 -10.04 9.75 -55.47 -0.54 -10.58 16 4 C 0.66 18.93 8.62 129.79 1.12 20.05 16 5 O -0.60 -20.15 16.46 19.81 0.33 -19.82 16 6 N -0.60 -14.14 3.33 -942.07 -3.13 -17.27 16 7 C 0.14 2.59 6.31 86.73 0.55 3.14 16 8 C -0.09 -1.36 3.10 -9.61 -0.03 -1.38 16 9 H 0.13 1.57 8.14 -2.39 -0.02 1.56 16 10 C 0.09 1.26 5.92 71.98 0.43 1.69 16 11 O -0.58 -7.86 13.50 -148.98 -2.01 -9.87 16 12 C 0.16 3.38 3.18 46.39 0.15 3.53 16 13 H 0.12 2.67 7.54 -2.39 -0.02 2.65 16 14 N -0.72 -18.57 4.56 -451.16 -2.06 -20.63 16 15 C 0.70 26.61 8.57 179.06 1.53 28.14 16 16 O -0.64 -30.09 15.98 -3.99 -0.06 -30.16 16 17 N -0.72 -29.68 5.55 -482.30 -2.68 -32.36 16 18 C 0.29 15.39 5.43 85.63 0.46 15.86 16 19 C -0.55 -29.60 9.28 25.60 0.24 -29.36 16 20 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 23 Si 0.98 41.82 29.54 68.60 2.03 43.84 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.09 2.07 6.62 86.86 0.57 2.65 16 28 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.41 7.77 -2.38 -0.02 1.39 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.71 6.50 -2.39 -0.02 0.70 16 37 H 0.40 2.24 9.12 -74.06 -0.68 1.56 16 38 H 0.41 8.54 7.21 -92.71 -0.67 7.87 16 39 H 0.40 13.75 8.34 -92.71 -0.77 12.98 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H 0.27 14.86 8.31 -92.72 -0.77 14.09 16 43 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 Total: -1.00 -78.19 372.20 -2.25 -80.44 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -1.07 Total: 25.70 kcal Atomic # 6 Polarization: 38.95 SS G_CDS: 6.67 Total: 45.62 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -7.58 Total: -125.17 kcal Atomic # 8 Polarization: -68.13 SS G_CDS: -2.29 Total: -70.43 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -78.19 -2.25 -80.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682122096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.550 kcal (2) G-P(sol) polarization free energy of solvation -78.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds