Wall clock time and date at job start Fri Apr 10 2020 18:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45191 * 109.47370 * 2 1 4 4 C 1.34641 * 117.00189 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99582 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99954 * 179.97438 * 4 3 2 7 7 C 1.47029 * 125.64635 * 179.97438 * 6 4 3 8 8 C 1.54324 * 107.26890 * 178.89588 * 7 6 4 9 9 H 1.09010 * 110.71717 * 96.17405 * 8 7 6 10 10 C 1.52997 * 110.87446 * 219.37308 * 8 7 6 11 11 O 1.42904 * 109.47022 * 288.61639 * 10 8 7 12 12 C 1.55153 * 102.94606 * 337.80925 * 8 7 6 13 13 H 1.08996 * 111.00558 * 277.38744 * 12 8 7 14 14 N 1.46502 * 111.00411 * 153.57298 * 12 8 7 15 15 C 1.34782 * 119.99706 * 155.00087 * 14 12 8 16 16 O 1.21586 * 119.99799 * 0.02562 * 15 14 12 17 17 N 1.34771 * 119.99751 * 180.02562 * 15 14 12 18 18 C 1.46503 * 119.99737 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46825 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00803 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47422 * 125.65237 * 359.95080 * 6 4 3 28 28 H 1.08996 * 109.47504 * 59.99975 * 1 2 3 29 29 H 1.09002 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47310 * 299.99859 * 1 2 3 31 31 H 1.08999 * 109.46863 * 239.99889 * 2 1 3 32 32 H 1.09006 * 109.47015 * 120.00120 * 2 1 3 33 33 H 1.08997 * 109.87876 * 59.48009 * 7 6 4 34 34 H 1.08996 * 110.01127 * 298.38761 * 7 6 4 35 35 H 1.09002 * 109.47018 * 48.60833 * 10 8 7 36 36 H 1.08998 * 109.47816 * 168.61421 * 10 8 7 37 37 H 0.96705 * 114.00201 * 180.02562 * 11 10 8 38 38 H 0.96994 * 120.00458 * 335.00048 * 14 12 8 39 39 H 0.96997 * 120.00373 * 0.02562 * 17 15 14 40 40 H 1.09004 * 109.46958 * 60.00450 * 18 17 15 41 41 H 1.08997 * 109.47731 * 300.00126 * 18 17 15 42 42 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.36849 * 85.33100 * 27 6 4 44 44 H 1.09004 * 110.36724 * 323.00979 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0889 0.5816 -0.0015 6 7 3.8639 2.7906 -0.0011 7 6 5.2955 3.1258 -0.0012 8 6 5.4057 4.6648 -0.0303 9 1 5.5382 5.0610 0.9766 10 6 6.5510 5.1122 -0.9408 11 8 7.8009 4.8016 -0.3217 12 6 4.0366 5.1003 -0.6160 13 1 4.0400 5.0394 -1.7042 14 7 3.6796 6.4492 -0.1694 15 6 2.8433 7.2045 -0.9088 16 8 2.3847 6.7661 -1.9461 17 7 2.5153 8.4456 -0.4983 18 6 1.6066 9.2667 -1.3023 19 6 1.4050 10.5995 -0.6284 20 1 1.9041 10.8137 0.3051 21 6 0.5834 11.5456 -1.2036 22 7 0.4078 12.7089 -0.6158 23 14 -0.2805 11.1750 -2.8178 24 1 -1.6019 10.5561 -2.5415 25 1 0.5473 10.2375 -3.6185 26 1 -0.4739 12.4366 -3.5769 27 6 3.0854 4.0425 -0.0022 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7751 2.7030 -0.8840 34 1 5.7696 2.7371 0.9000 35 1 6.4798 4.5924 -1.8963 36 1 6.4848 6.1875 -1.1064 37 1 8.5732 5.0583 -0.8441 38 1 4.0451 6.7987 0.6582 39 1 2.8814 8.7954 0.3290 40 1 0.6469 8.7589 -1.3983 41 1 2.0363 9.4217 -2.2919 42 1 -0.1705 13.3743 -1.0203 43 1 2.8140 4.3214 1.0160 44 1 2.1922 3.9333 -0.6174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682122098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:10 Heat of formation + Delta-G solvation = -155.326018 kcal Electronic energy + Delta-G solvation = -26576.170515 eV Core-core repulsion = 22528.977569 eV Total energy + Delta-G solvation = -4047.192946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90294 -39.81632 -38.61000 -36.93694 -36.38119 -34.49504 -34.06403 -32.48398 -32.14701 -31.34860 -29.02896 -27.44522 -26.38992 -23.76685 -23.08661 -21.97983 -21.14250 -20.74334 -20.24962 -18.44809 -18.36762 -17.52587 -17.21256 -17.08428 -16.45356 -16.29817 -15.45413 -15.09486 -14.91830 -14.50525 -14.44370 -14.32818 -13.97273 -13.55335 -13.33500 -13.30367 -13.14851 -12.94975 -12.66848 -12.39836 -12.24042 -12.07524 -12.00566 -11.82801 -11.61484 -11.08965 -10.99301 -10.83375 -10.77810 -10.74209 -10.31588 -10.00337 -9.72566 -9.50086 -9.19178 -8.95324 -8.79348 -8.12570 -6.23684 -4.26046 1.79912 2.60777 2.97098 3.25631 3.32923 3.40581 3.56270 3.64152 3.80102 4.19896 4.29377 4.31515 4.65592 4.68060 4.72175 4.82605 4.89789 4.99041 5.00985 5.03043 5.11925 5.20166 5.22815 5.36257 5.46027 5.50813 5.55814 5.62381 5.68933 5.81894 5.86826 6.15070 6.55273 6.66668 7.06606 7.15499 7.16034 7.28167 7.32210 7.46975 8.05324 8.22947 8.60519 8.76128 9.08405 9.36823 10.88233 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003054 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.228756 B = 9164.981612 C =10952.844981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 O -0.366 6.366 4 C 0.668 3.332 5 O -0.574 6.574 6 N -0.603 5.603 7 C 0.140 3.860 8 C -0.107 4.107 9 H 0.103 0.897 10 C 0.086 3.914 11 O -0.573 6.573 12 C 0.164 3.836 13 H 0.111 0.889 14 N -0.744 5.744 15 C 0.696 3.304 16 O -0.600 6.600 17 N -0.719 5.719 18 C 0.238 3.762 19 C -0.544 4.544 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.893 5.893 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.260 1.260 26 H -0.284 1.284 27 C 0.092 3.908 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.383 0.617 38 H 0.398 0.602 39 H 0.394 0.606 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.268 0.732 43 H 0.077 0.923 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 -20.980 2.420 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 O -0.280 6.280 4 C 0.423 3.577 5 O -0.463 6.463 6 N -0.344 5.344 7 C 0.019 3.981 8 C -0.127 4.127 9 H 0.121 0.879 10 C 0.008 3.992 11 O -0.379 6.379 12 C 0.056 3.944 13 H 0.129 0.871 14 N -0.401 5.401 15 C 0.396 3.604 16 O -0.479 6.479 17 N -0.371 5.371 18 C 0.116 3.884 19 C -0.582 4.582 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.530 5.530 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.184 1.184 26 H -0.209 1.209 27 C -0.033 4.033 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.232 0.768 39 H 0.227 0.773 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.262 -21.811 1.883 23.399 hybrid contribution 0.143 0.467 -0.377 0.617 sum 8.404 -21.344 1.506 22.988 Atomic orbital electron populations 1.21836 0.92418 1.03031 1.03832 1.22967 0.94939 0.78606 1.02690 1.86282 1.21697 1.33201 1.86804 1.17431 0.81251 0.82627 0.76390 1.90996 1.60050 1.38871 1.56428 1.46935 1.08123 1.03137 1.76232 1.21883 0.79016 0.93747 1.03475 1.22543 0.93843 0.94624 1.01683 0.87913 1.22120 0.82989 0.99658 0.94415 1.86450 1.15628 1.85989 1.49854 1.21688 0.90888 0.81151 1.00651 0.87088 1.44976 1.52387 1.15099 1.27606 1.16108 0.79468 0.81442 0.83424 1.90885 1.58630 1.73283 1.25060 1.45411 1.50741 1.13425 1.27544 1.19382 0.88131 0.89595 0.91320 1.21083 1.30174 0.97036 1.09863 0.90275 1.24785 0.95735 0.94587 0.97506 1.69879 1.37772 1.05873 1.39460 0.86815 0.80735 0.78217 0.83898 1.19831 1.18444 1.20938 1.22849 0.95792 0.82374 1.02240 0.91281 0.89984 0.91365 0.91172 0.91211 0.90539 0.90317 0.92875 0.92214 0.76970 0.76806 0.77319 0.96258 0.95848 0.92238 0.90455 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 2 C 0.08 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -4.56 9.75 -40.33 -0.39 -4.96 16 4 C 0.67 9.16 8.62 54.05 0.47 9.63 16 5 O -0.57 -9.13 16.46 -19.28 -0.32 -9.44 16 6 N -0.60 -7.15 3.33 -176.28 -0.59 -7.74 16 7 C 0.14 1.41 6.41 -3.06 -0.02 1.39 16 8 C -0.11 -0.93 2.85 -88.79 -0.25 -1.19 16 9 H 0.10 0.82 8.00 -51.92 -0.42 0.40 16 10 C 0.09 0.69 6.39 37.16 0.24 0.92 16 11 O -0.57 -4.51 13.60 -35.23 -0.48 -4.99 16 12 C 0.16 1.80 2.87 -65.77 -0.19 1.61 16 13 H 0.11 1.41 7.45 -51.93 -0.39 1.02 16 14 N -0.74 -9.04 5.20 -56.57 -0.29 -9.34 16 15 C 0.70 12.35 8.57 -86.92 -0.74 11.61 16 16 O -0.60 -13.03 15.98 5.29 0.08 -12.95 16 17 N -0.72 -13.73 5.55 -66.41 -0.37 -14.10 16 18 C 0.24 5.67 4.50 -5.19 -0.02 5.65 16 19 C -0.54 -14.52 9.83 -34.44 -0.34 -14.85 16 20 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 22 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 23 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.09 1.05 6.62 -2.52 -0.02 1.03 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.40 7.94 -51.93 -0.41 -0.02 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.38 1.45 9.12 45.56 0.42 1.87 16 38 H 0.40 3.74 8.58 -40.82 -0.35 3.39 16 39 H 0.39 6.51 8.34 -40.82 -0.34 6.17 16 40 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 41 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -35.34 371.87 -7.05 -42.39 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.03 Total: 6.28 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: -0.37 Total: 18.18 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.48 Total: -56.49 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.11 Total: -32.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.34 -7.05 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682122098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.938 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds