Wall clock time and date at job start Fri Apr 10 2020 18:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45191 * 109.47370 * 2 1 4 4 C 1.34641 * 117.00189 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99582 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99954 * 179.97438 * 4 3 2 7 7 C 1.47029 * 125.64635 * 179.97438 * 6 4 3 8 8 C 1.54324 * 107.26890 * 178.89588 * 7 6 4 9 9 H 1.09010 * 110.71717 * 96.17405 * 8 7 6 10 10 C 1.52997 * 110.87446 * 219.37308 * 8 7 6 11 11 O 1.42904 * 109.47022 * 288.61639 * 10 8 7 12 12 C 1.55153 * 102.94606 * 337.80925 * 8 7 6 13 13 H 1.08996 * 111.00558 * 277.38744 * 12 8 7 14 14 N 1.46502 * 111.00411 * 153.57298 * 12 8 7 15 15 C 1.34782 * 119.99706 * 155.00087 * 14 12 8 16 16 O 1.21586 * 119.99799 * 0.02562 * 15 14 12 17 17 N 1.34771 * 119.99751 * 180.02562 * 15 14 12 18 18 C 1.46503 * 119.99737 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46825 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00803 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47422 * 125.65237 * 359.95080 * 6 4 3 28 28 H 1.08996 * 109.47504 * 59.99975 * 1 2 3 29 29 H 1.09002 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47310 * 299.99859 * 1 2 3 31 31 H 1.08999 * 109.46863 * 239.99889 * 2 1 3 32 32 H 1.09006 * 109.47015 * 120.00120 * 2 1 3 33 33 H 1.08997 * 109.87876 * 59.48009 * 7 6 4 34 34 H 1.08996 * 110.01127 * 298.38761 * 7 6 4 35 35 H 1.09002 * 109.47018 * 48.60833 * 10 8 7 36 36 H 1.08998 * 109.47816 * 168.61421 * 10 8 7 37 37 H 0.96705 * 114.00201 * 180.02562 * 11 10 8 38 38 H 0.96994 * 120.00458 * 335.00048 * 14 12 8 39 39 H 0.96997 * 120.00373 * 0.02562 * 17 15 14 40 40 H 1.09004 * 109.46958 * 60.00450 * 18 17 15 41 41 H 1.08997 * 109.47731 * 300.00126 * 18 17 15 42 42 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.36849 * 85.33100 * 27 6 4 44 44 H 1.09004 * 110.36724 * 323.00979 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0889 0.5816 -0.0015 6 7 3.8639 2.7906 -0.0011 7 6 5.2955 3.1258 -0.0012 8 6 5.4057 4.6648 -0.0303 9 1 5.5382 5.0610 0.9766 10 6 6.5510 5.1122 -0.9408 11 8 7.8009 4.8016 -0.3217 12 6 4.0366 5.1003 -0.6160 13 1 4.0400 5.0394 -1.7042 14 7 3.6796 6.4492 -0.1694 15 6 2.8433 7.2045 -0.9088 16 8 2.3847 6.7661 -1.9461 17 7 2.5153 8.4456 -0.4983 18 6 1.6066 9.2667 -1.3023 19 6 1.4050 10.5995 -0.6284 20 1 1.9041 10.8137 0.3051 21 6 0.5834 11.5456 -1.2036 22 7 0.4078 12.7089 -0.6158 23 14 -0.2805 11.1750 -2.8178 24 1 -1.6019 10.5561 -2.5415 25 1 0.5473 10.2375 -3.6185 26 1 -0.4739 12.4366 -3.5769 27 6 3.0854 4.0425 -0.0022 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7751 2.7030 -0.8840 34 1 5.7696 2.7371 0.9000 35 1 6.4798 4.5924 -1.8963 36 1 6.4848 6.1875 -1.1064 37 1 8.5732 5.0583 -0.8441 38 1 4.0451 6.7987 0.6582 39 1 2.8814 8.7954 0.3290 40 1 0.6469 8.7589 -1.3983 41 1 2.0363 9.4217 -2.2919 42 1 -0.1705 13.3743 -1.0203 43 1 2.8140 4.3214 1.0160 44 1 2.1922 3.9333 -0.6174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682122098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:09 Heat of formation + Delta-G solvation = -185.382557 kcal Electronic energy + Delta-G solvation = -26577.473864 eV Core-core repulsion = 22528.977569 eV Total energy + Delta-G solvation = -4048.496296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89843 -41.03897 -39.71351 -37.73234 -37.26594 -36.16004 -35.34846 -34.35473 -33.06504 -32.13263 -30.35625 -29.01084 -27.15769 -24.84751 -24.11518 -23.42080 -22.08270 -21.93208 -21.40256 -19.87777 -19.36762 -18.41608 -18.27009 -18.06948 -18.01348 -17.35952 -16.77237 -16.43435 -16.09395 -15.69085 -15.60909 -15.20556 -15.05588 -14.90145 -14.58379 -14.35381 -14.27352 -14.07962 -14.05843 -13.55243 -13.27932 -13.03308 -12.96170 -12.80122 -12.67791 -12.56602 -12.43316 -11.91089 -11.90147 -11.82401 -11.61330 -11.57884 -11.29226 -10.90436 -10.88513 -10.40236 -9.98805 -9.68741 -8.36554 -6.43014 0.89395 1.36427 1.38824 1.51235 1.55807 1.75873 2.18358 2.31610 2.76875 2.99537 3.00770 3.33277 3.40064 3.62151 3.93758 3.99289 4.04867 4.06748 4.13902 4.30897 4.32141 4.50897 4.55443 4.59955 4.67695 4.70841 4.75066 4.83787 4.89267 4.97870 5.03016 5.08366 5.10490 5.29328 5.32931 5.46719 5.57446 5.98548 6.16804 6.29334 6.59899 6.89752 7.03971 7.17162 7.27752 7.67045 8.78130 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003054 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.228756 B = 9164.981612 C =10952.844981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 O -0.374 6.374 4 C 0.663 3.337 5 O -0.601 6.601 6 N -0.600 5.600 7 C 0.139 3.861 8 C -0.091 4.091 9 H 0.119 0.881 10 C 0.089 3.911 11 O -0.585 6.585 12 C 0.167 3.833 13 H 0.097 0.903 14 N -0.718 5.718 15 C 0.700 3.300 16 O -0.638 6.638 17 N -0.719 5.719 18 C 0.251 3.749 19 C -0.544 4.544 20 H 0.060 0.940 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.258 1.258 26 H -0.276 1.276 27 C 0.096 3.904 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.416 0.584 39 H 0.406 0.594 40 H 0.010 0.990 41 H 0.012 0.988 42 H 0.272 0.728 43 H 0.090 0.910 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 -21.915 2.490 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 O -0.288 6.288 4 C 0.418 3.582 5 O -0.493 6.493 6 N -0.341 5.341 7 C 0.018 3.982 8 C -0.111 4.111 9 H 0.137 0.863 10 C 0.011 3.989 11 O -0.394 6.394 12 C 0.059 3.941 13 H 0.115 0.885 14 N -0.375 5.375 15 C 0.399 3.601 16 O -0.520 6.520 17 N -0.372 5.372 18 C 0.127 3.873 19 C -0.582 4.582 20 H 0.078 0.922 21 C -0.174 4.174 22 N -0.572 5.572 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.182 1.182 26 H -0.201 1.201 27 C -0.028 4.028 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.253 0.747 39 H 0.242 0.758 40 H 0.028 0.972 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.812 -22.756 2.000 24.484 hybrid contribution 0.054 0.696 -0.332 0.773 sum 8.867 -22.060 1.668 23.834 Atomic orbital electron populations 1.21856 0.90428 1.04609 1.03525 1.23265 0.96459 0.77419 1.02868 1.86300 1.21019 1.34976 1.86539 1.17636 0.81510 0.82829 0.76248 1.90967 1.60692 1.39764 1.57855 1.47023 1.08922 1.02740 1.75453 1.22008 0.78035 0.94565 1.03617 1.22451 0.92664 0.93409 1.02530 0.86322 1.22045 0.82933 0.99681 0.94238 1.86401 1.16205 1.86177 1.50620 1.21666 0.92348 0.80078 0.99994 0.88546 1.44663 1.50554 1.14873 1.27425 1.16132 0.79666 0.81070 0.83196 1.90866 1.60199 1.73965 1.26982 1.45089 1.50558 1.13821 1.27759 1.18949 0.88564 0.88741 0.91049 1.21295 1.29397 0.98259 1.09204 0.92173 1.25576 0.96631 0.94447 1.00752 1.69983 1.39000 1.06957 1.41246 0.85874 0.79765 0.78285 0.80060 1.19111 1.18204 1.20107 1.22783 0.95159 0.82267 1.02590 0.91753 0.87446 0.91413 0.91204 0.90885 0.90653 0.89978 0.92497 0.92087 0.74902 0.74659 0.75811 0.97193 0.97000 0.91926 0.89176 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.07 1.35 6.19 71.98 0.45 1.80 16 3 O -0.37 -9.23 9.75 -55.50 -0.54 -9.77 16 4 C 0.66 17.92 8.62 129.79 1.12 19.04 16 5 O -0.60 -19.00 16.46 19.81 0.33 -18.67 16 6 N -0.60 -13.66 3.33 -942.05 -3.13 -16.80 16 7 C 0.14 2.57 6.41 86.73 0.56 3.13 16 8 C -0.09 -1.37 2.85 -9.61 -0.03 -1.40 16 9 H 0.12 1.48 8.00 -2.38 -0.02 1.46 16 10 C 0.09 1.21 6.39 71.98 0.46 1.67 16 11 O -0.59 -7.73 13.60 -148.98 -2.03 -9.76 16 12 C 0.17 3.38 2.87 46.39 0.13 3.52 16 13 H 0.10 2.35 7.45 -2.39 -0.02 2.33 16 14 N -0.72 -15.97 5.20 -451.15 -2.35 -18.32 16 15 C 0.70 23.91 8.57 179.05 1.53 25.44 16 16 O -0.64 -27.30 15.98 -3.99 -0.06 -27.36 16 17 N -0.72 -26.65 5.55 -482.29 -2.68 -29.33 16 18 C 0.25 11.82 4.50 85.63 0.38 12.20 16 19 C -0.54 -29.02 9.83 25.60 0.25 -28.77 16 20 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 21 C 0.03 1.44 5.47 84.65 0.46 1.90 16 22 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 23 Si 0.94 43.09 27.47 68.60 1.88 44.98 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.10 2.07 6.62 86.86 0.57 2.65 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.43 7.69 -2.39 -0.02 1.42 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 0.74 7.94 -2.39 -0.02 0.72 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.40 2.07 9.12 -74.05 -0.68 1.39 16 38 H 0.42 6.58 8.58 -92.71 -0.80 5.79 16 39 H 0.41 12.88 8.34 -92.71 -0.77 12.11 16 40 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 41 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 42 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -75.67 371.87 -2.90 -78.57 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -1.26 Total: 20.89 kcal Atomic # 6 Polarization: 33.42 SS G_CDS: 6.63 Total: 40.05 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -7.86 Total: -118.93 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -2.30 Total: -65.56 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Total: -75.67 -2.90 -78.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682122098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.809 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds