Wall clock time and date at job start Fri Apr 10 2020 18:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34636 * 117.00339 * 179.97438 * 3 2 1 5 5 O 1.21518 * 119.99793 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00042 * 180.02562 * 4 3 2 7 7 C 1.47013 * 125.64813 * 0.03080 * 6 4 3 8 8 C 1.54329 * 107.27018 * 181.01986 * 7 6 4 9 9 H 1.08992 * 110.72219 * 263.65104 * 8 7 6 10 10 N 1.46507 * 110.71747 * 140.55112 * 8 7 6 11 11 C 1.34781 * 119.99450 * 86.45701 * 10 8 7 12 12 O 1.21582 * 120.00183 * 359.97438 * 11 10 8 13 13 N 1.34778 * 119.99453 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99571 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47341 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00336 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00278 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46990 * 60.00383 * 19 17 15 21 21 H 1.48496 * 109.47038 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47072 * 300.00035 * 19 17 15 23 23 C 1.55156 * 102.94201 * 22.19354 * 8 7 6 24 24 H 1.09001 * 111.00516 * 82.56852 * 23 8 7 25 25 C 1.52994 * 111.00555 * 206.38695 * 23 8 7 26 26 O 1.42899 * 109.47618 * 185.00014 * 25 23 8 27 27 C 1.47423 * 125.64458 * 179.71904 * 6 4 3 28 28 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 33 33 H 1.08999 * 109.88156 * 300.43178 * 7 6 4 34 34 H 1.08995 * 109.88508 * 61.44833 * 7 6 4 35 35 H 0.96990 * 120.00330 * 266.45632 * 10 8 7 36 36 H 0.96990 * 120.00327 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.47282 * 299.99847 * 14 13 11 38 38 H 1.09005 * 109.47437 * 59.99849 * 14 13 11 39 39 H 0.97001 * 120.00862 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46909 * 304.99501 * 25 23 8 41 41 H 1.08992 * 109.47290 * 64.99468 * 25 23 8 42 42 H 0.96694 * 114.00615 * 180.02562 * 26 25 23 43 43 H 1.09000 * 110.37165 * 274.74835 * 27 6 4 44 44 H 1.08997 * 110.37043 * 37.07293 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0011 7 6 3.0874 4.0392 0.0018 8 6 4.0965 5.2066 -0.0240 9 1 4.2789 5.5810 0.9832 10 7 3.6218 6.2829 -0.8971 11 6 2.7979 7.2319 -0.4099 12 8 2.4484 7.1944 0.7540 13 7 2.3616 8.2224 -1.2131 14 6 1.4665 9.2541 -0.6834 15 6 1.1290 10.2356 -1.7760 16 1 1.5399 10.1037 -2.7662 17 6 0.2951 11.3012 -1.5121 18 7 -0.2056 11.4616 -0.3066 19 14 -0.1238 12.5175 -2.8667 20 1 -0.7958 11.8038 -3.9822 21 1 -1.0309 13.5633 -2.3298 22 1 1.1228 13.1523 -3.3648 23 6 5.3741 4.5486 -0.6089 24 1 5.3299 4.5089 -1.6973 25 6 6.6324 5.2821 -0.1404 26 8 7.7778 4.7244 -0.7878 27 6 5.2993 3.1269 0.0076 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 2.4506 4.0802 -0.8819 34 1 2.4757 4.0948 0.9022 35 1 3.9003 6.3127 -1.8257 36 1 2.6401 8.2521 -2.1417 37 1 0.5510 8.7885 -0.3183 38 1 1.9597 9.7774 0.1359 39 1 -0.7921 12.2116 -0.1207 40 1 6.5516 6.3395 -0.3925 41 1 6.7360 5.1728 0.9390 42 1 8.6133 5.1417 -0.5374 43 1 5.6830 3.1327 1.0278 44 1 5.8575 2.4186 -0.6045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682122099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:13 Heat of formation + Delta-G solvation = -188.310527 kcal Electronic energy + Delta-G solvation = -26523.201970 eV Core-core repulsion = 22474.578708 eV Total energy + Delta-G solvation = -4048.623262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.89624 -41.01650 -39.67190 -37.72740 -37.25792 -36.13293 -35.32647 -34.28985 -33.03587 -32.11751 -30.07199 -28.69682 -27.14221 -25.09112 -24.23318 -23.54817 -22.00266 -21.93057 -21.42382 -19.71839 -19.38372 -18.31915 -18.20923 -17.98660 -17.86878 -17.35914 -16.82622 -16.38321 -16.15027 -15.88605 -15.50467 -15.13917 -14.96109 -14.78202 -14.46024 -14.36911 -14.12258 -13.99212 -13.84911 -13.55882 -13.16513 -13.00119 -12.92475 -12.83460 -12.66066 -12.57319 -12.43626 -12.21129 -11.90217 -11.82834 -11.58075 -11.46229 -11.23598 -10.87341 -10.76319 -10.35480 -9.98366 -9.62296 -8.25414 -6.41246 0.90975 1.45706 1.49456 1.55563 1.57360 1.79969 2.22878 2.41235 2.72531 3.02729 3.09835 3.33381 3.45107 3.66854 3.92508 3.98946 4.05269 4.08113 4.12432 4.30487 4.33416 4.50221 4.58646 4.63277 4.65946 4.71454 4.76298 4.88629 4.93187 5.05966 5.08010 5.15251 5.32608 5.32787 5.47771 5.51969 5.70180 5.88798 6.16879 6.24995 6.70592 6.93117 7.03808 7.27615 7.32012 7.73561 8.86454 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.002896 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.113560 B = 9667.829234 C =11413.161817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 O -0.376 6.376 4 C 0.662 3.338 5 O -0.600 6.600 6 N -0.600 5.600 7 C 0.098 3.902 8 C 0.170 3.830 9 H 0.101 0.899 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.641 6.641 13 N -0.721 5.721 14 C 0.286 3.714 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.982 3.018 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.091 4.091 24 H 0.110 0.890 25 C 0.091 3.909 26 O -0.586 6.586 27 C 0.136 3.864 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.414 0.586 36 H 0.405 0.595 37 H -0.014 1.014 38 H -0.012 1.012 39 H 0.268 0.732 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.401 0.599 43 H 0.087 0.913 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -18.397 -3.017 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 O -0.290 6.290 4 C 0.418 3.582 5 O -0.492 6.492 6 N -0.341 5.341 7 C -0.026 4.026 8 C 0.063 3.937 9 H 0.119 0.881 10 N -0.378 5.378 11 C 0.396 3.604 12 O -0.522 6.522 13 N -0.375 5.375 14 C 0.163 3.837 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.111 4.111 24 H 0.128 0.872 25 C 0.013 3.987 26 O -0.395 6.395 27 C 0.015 3.985 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.241 0.759 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.252 0.748 43 H 0.105 0.895 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.798 -19.092 -2.129 22.037 hybrid contribution 0.002 0.964 -0.617 1.144 sum 10.801 -18.128 -2.746 21.279 Atomic orbital electron populations 1.21860 0.90488 1.04623 1.03475 1.23269 0.96430 0.77398 1.02911 1.86313 1.21137 1.35026 1.86507 1.17660 0.81481 0.82871 0.76213 1.90966 1.60643 1.39651 1.57940 1.47089 1.09044 1.02551 1.75430 1.22479 0.94790 0.82356 1.03006 1.21563 0.91439 0.84972 0.95737 0.88085 1.44786 1.51711 1.26384 1.14932 1.16231 0.79403 0.80155 0.84640 1.90867 1.64078 1.78981 1.18315 1.45295 1.51372 1.26934 1.13884 1.18396 0.86816 0.84466 0.94033 1.21584 1.30330 1.09980 0.97358 0.89855 1.26007 0.95179 0.99896 0.98358 1.70124 1.32781 1.31429 1.22562 0.85248 0.78449 0.77554 0.78204 1.18795 1.21272 1.18686 1.22591 0.92871 0.93054 1.02545 0.87211 1.21987 0.84034 0.96140 0.96573 1.86402 1.18173 1.64170 1.70797 1.22422 0.78016 0.95674 1.02402 0.91708 0.87353 0.91604 0.91034 0.90931 0.90634 0.91394 0.74864 0.75944 0.99577 0.99380 0.92296 0.91996 0.91726 0.74832 0.89475 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.29 71.98 0.74 -1.29 16 2 C 0.07 1.42 6.19 71.98 0.45 1.87 16 3 O -0.38 -9.76 9.82 -55.45 -0.54 -10.31 16 4 C 0.66 18.64 8.62 129.79 1.12 19.75 16 5 O -0.60 -19.37 16.39 19.78 0.32 -19.04 16 6 N -0.60 -14.50 3.32 -941.67 -3.13 -17.63 16 7 C 0.10 2.40 6.64 86.73 0.58 2.97 16 8 C 0.17 3.72 2.70 46.18 0.12 3.85 16 9 H 0.10 2.48 7.59 -2.39 -0.02 2.46 16 10 N -0.72 -17.72 5.13 -452.13 -2.32 -20.04 16 11 C 0.70 26.12 8.56 179.05 1.53 27.65 16 12 O -0.64 -30.27 16.07 -3.97 -0.06 -30.34 16 13 N -0.72 -28.84 5.55 -482.29 -2.68 -31.52 16 14 C 0.29 15.21 5.43 85.63 0.46 15.68 16 15 C -0.55 -29.29 9.28 25.60 0.24 -29.05 16 16 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -55.16 13.29 21.44 0.28 -54.88 16 19 Si 0.98 41.41 29.54 68.60 2.03 43.43 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 C -0.09 -1.47 2.92 -9.33 -0.03 -1.50 16 24 H 0.11 1.67 8.00 -2.39 -0.02 1.65 16 25 C 0.09 1.21 6.50 71.98 0.47 1.68 16 26 O -0.59 -7.72 13.63 -148.98 -2.03 -9.75 16 27 C 0.14 2.61 6.35 86.93 0.55 3.16 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.41 7.46 8.53 -92.72 -0.79 6.67 16 36 H 0.41 13.14 8.33 -92.72 -0.77 12.37 16 37 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.75 7.96 -2.39 -0.02 0.73 16 42 H 0.40 1.92 9.12 -74.06 -0.68 1.24 16 43 H 0.09 1.50 7.91 -2.39 -0.02 1.49 16 44 H 0.09 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -78.07 375.69 -2.64 -80.71 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -1.20 Total: 23.85 kcal Atomic # 6 Polarization: 38.82 SS G_CDS: 6.70 Total: 45.51 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -7.85 Total: -124.06 kcal Atomic # 8 Polarization: -67.12 SS G_CDS: -2.31 Total: -69.44 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -78.07 -2.64 -80.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682122099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.603 kcal (2) G-P(sol) polarization free energy of solvation -78.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds