Wall clock time and date at job start Fri Apr 10 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46945 * 270.00310 * 3 2 1 5 5 H 1.48503 * 109.46853 * 29.99657 * 3 2 1 6 6 H 1.48498 * 109.47325 * 149.99561 * 3 2 1 7 7 C 1.38947 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00286 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00024 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00022 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00060 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99765 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99802 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99725 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99905 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47317 * 179.97438 * 17 16 14 19 19 O 1.42896 * 109.46947 * 64.99892 * 18 17 16 20 20 C 1.42899 * 114.00352 * 180.02562 * 19 18 17 21 21 C 1.53175 * 109.54545 * 269.56219 * 20 19 18 22 22 C 1.53094 * 109.16661 * 183.14980 * 21 20 19 23 23 O 1.42898 * 109.41211 * 57.60371 * 22 21 20 24 24 C 1.42897 * 114.10001 * 298.84343 * 23 22 21 25 25 C 1.53089 * 109.41656 * 61.16248 * 24 23 22 26 26 H 0.97002 * 119.99962 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00158 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46934 * 60.00550 * 12 10 9 29 29 H 1.08994 * 109.46967 * 300.00394 * 12 10 9 30 30 H 0.97002 * 119.99819 * 359.97438 * 13 12 10 31 31 H 0.97000 * 120.00297 * 0.02562 * 16 14 13 32 32 H 1.08999 * 109.47113 * 59.99703 * 17 16 14 33 33 H 1.09002 * 109.47186 * 300.00049 * 17 16 14 34 34 H 1.09000 * 109.47001 * 305.00230 * 18 17 16 35 35 H 1.09001 * 109.47043 * 185.00041 * 18 17 16 36 36 H 1.09004 * 109.61153 * 29.77680 * 20 19 18 37 37 H 1.09004 * 109.52259 * 303.05246 * 21 20 19 38 38 H 1.09006 * 109.52330 * 63.24079 * 21 20 19 39 39 H 1.09006 * 109.47665 * 297.62062 * 22 21 20 40 40 H 1.08993 * 109.47955 * 177.58818 * 22 21 20 41 41 H 1.09002 * 109.48425 * 301.17758 * 24 23 22 42 42 H 1.09001 * 109.49443 * 181.15303 * 24 23 22 43 43 H 1.08997 * 109.52675 * 182.48845 * 25 24 23 44 44 H 1.08995 * 109.52428 * 62.29514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3741 -3.9980 0.0023 15 8 8.1642 -3.0738 0.0019 16 7 7.8233 -5.2687 0.0023 17 6 9.2637 -5.5364 0.0025 18 6 9.5016 -7.0478 0.0031 19 8 9.0131 -7.6074 -1.2176 20 6 9.1869 -9.0221 -1.3191 21 6 10.5370 -9.3268 -1.9754 22 6 10.6799 -10.8409 -2.1515 23 8 9.5910 -11.3328 -2.9352 24 6 8.3059 -11.1184 -2.3482 25 6 8.0676 -9.6155 -2.1801 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3633 -0.0004 28 1 5.9240 -1.8560 0.8906 29 1 5.9240 -1.8574 -0.8893 30 1 5.4186 -4.4890 0.0024 31 1 7.1930 -6.0060 0.0015 32 1 9.7147 -5.0976 0.8924 33 1 9.7149 -5.0977 -0.8875 34 1 8.9757 -7.4980 0.8451 35 1 10.5694 -7.2476 0.0928 36 1 9.1565 -9.4668 -0.3244 37 1 10.5863 -8.8406 -2.9498 38 1 11.3423 -8.9562 -1.3411 39 1 10.6712 -11.3229 -1.1739 40 1 11.6201 -11.0608 -2.6570 41 1 8.2660 -11.6041 -1.3732 42 1 7.5358 -11.5384 -2.9952 43 1 7.1069 -9.4514 -1.6921 44 1 8.0670 -9.1351 -3.1584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682184779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:18 Heat of formation + Delta-G solvation = -160.207138 kcal Electronic energy + Delta-G solvation = -25609.917715 eV Core-core repulsion = 21562.513108 eV Total energy + Delta-G solvation = -4047.404608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.16335 -39.81469 -38.44669 -37.93203 -35.00900 -34.41913 -33.69673 -32.78606 -31.78612 -31.62863 -29.70111 -27.39610 -24.87585 -24.33653 -24.06760 -22.68933 -20.84762 -20.77025 -19.63221 -18.83860 -18.07994 -17.60715 -16.76674 -16.55087 -16.23171 -15.71175 -15.60325 -15.47019 -15.29411 -14.92539 -14.58863 -14.34819 -14.31305 -13.95836 -13.72196 -13.43026 -13.12205 -12.94754 -12.74332 -12.47125 -12.14717 -12.08531 -11.95712 -11.85386 -11.72677 -11.26188 -11.21934 -10.85268 -10.62998 -10.17343 -10.13087 -10.04905 -9.92625 -9.68430 -9.20387 -8.75028 -8.65052 -8.29036 -6.39632 -3.92124 2.77346 3.01006 3.05723 3.08133 3.13722 3.36650 3.41385 3.59707 4.04767 4.21408 4.25645 4.32861 4.45957 4.52660 4.63844 4.65661 4.70032 4.80042 4.84630 4.94037 4.99030 5.12990 5.15533 5.18903 5.33555 5.44731 5.51657 5.59072 5.65522 5.70588 5.75136 5.82573 5.88293 6.45192 6.67073 6.68893 6.77415 7.06097 7.46454 8.01709 8.20268 8.45893 8.75812 8.83031 9.31269 9.65223 10.72548 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.001987 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.620370 B =14090.577123 C =14965.414913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.601 6.601 16 N -0.744 5.744 17 C 0.144 3.856 18 C 0.049 3.951 19 O -0.373 6.373 20 C 0.089 3.911 21 C -0.179 4.179 22 C 0.063 3.937 23 O -0.382 6.382 24 C 0.064 3.936 25 C -0.155 4.155 26 H 0.275 0.725 27 H 0.375 0.625 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.408 0.592 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.215 -19.028 -0.841 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.405 3.595 15 O -0.480 6.480 16 N -0.401 5.401 17 C 0.020 3.980 18 C -0.028 4.028 19 O -0.293 6.293 20 C 0.031 3.969 21 C -0.217 4.217 22 C -0.014 4.014 23 O -0.301 6.301 24 C -0.013 4.013 25 C -0.193 4.193 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.245 0.755 31 H 0.234 0.766 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.242 -18.713 -1.160 29.090 hybrid contribution 0.061 0.809 0.515 0.961 sum 22.303 -17.903 -0.645 28.607 Atomic orbital electron populations 1.69620 1.05707 1.27788 1.48281 1.25068 0.95543 0.98182 0.97168 0.86665 0.79913 0.83737 0.79149 1.19388 1.20012 1.19199 1.19437 0.78974 0.96780 1.48614 0.86104 1.42115 1.07680 1.06143 1.65519 1.19674 0.88126 0.84853 0.84858 1.90534 1.69282 1.30934 1.55628 1.20797 0.93269 0.82953 1.03212 1.44739 1.05235 1.09267 1.79011 1.15825 0.82554 0.83170 0.77916 1.90899 1.55213 1.43223 1.58678 1.44926 1.07715 1.06365 1.81053 1.21155 0.81114 0.92673 1.03086 1.22860 0.99094 0.93759 0.87117 1.88025 1.82299 1.20633 1.38298 1.22096 0.94549 0.81896 0.98335 1.22747 0.98212 0.97595 1.03193 1.22555 0.90579 0.92360 0.95858 1.87958 1.14436 1.80397 1.47294 1.22598 0.85631 0.94233 0.98853 1.22311 0.98859 0.96228 1.01908 0.91409 0.79225 0.89912 0.89894 0.75473 0.76649 0.90124 0.90775 0.92422 0.91632 0.92015 0.89899 0.90674 0.93124 0.88499 0.92993 0.88090 0.89848 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.96 55.50 0.77 -24.29 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 9 N -0.58 -13.52 5.09 -10.96 -0.06 -13.57 16 10 C 0.44 9.75 7.85 -10.98 -0.09 9.66 16 11 O -0.58 -14.72 15.24 5.54 0.08 -14.63 16 12 C 0.13 2.25 6.15 -5.19 -0.03 2.22 16 13 N -0.72 -11.93 5.53 -66.41 -0.37 -12.30 16 14 C 0.71 11.27 8.57 -86.92 -0.74 10.53 16 15 O -0.60 -11.49 16.34 5.29 0.09 -11.40 16 16 N -0.74 -8.83 5.51 -65.22 -0.36 -9.19 16 17 C 0.14 1.40 6.06 -4.04 -0.02 1.38 16 18 C 0.05 0.34 5.89 37.16 0.22 0.56 16 19 O -0.37 -3.29 9.94 -35.23 -0.35 -3.64 16 20 C 0.09 0.62 2.70 -26.55 -0.07 0.54 16 21 C -0.18 -1.12 5.76 -26.59 -0.15 -1.27 16 22 C 0.06 0.37 6.84 37.21 0.25 0.62 16 23 O -0.38 -3.10 10.76 -35.23 -0.38 -3.48 16 24 C 0.06 0.40 6.84 37.20 0.25 0.65 16 25 C -0.16 -1.09 5.79 -26.59 -0.15 -1.24 16 26 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.41 6.56 7.45 -40.82 -0.30 6.26 16 31 H 0.40 4.05 8.49 -40.82 -0.35 3.70 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.07 0.34 7.99 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.38 7.99 -51.93 -0.42 -0.04 16 39 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -34.48 367.79 -7.27 -41.75 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -6.75 Total: 14.78 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: -0.79 Total: 16.03 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.01 Total: -59.35 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.56 Total: -33.15 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.48 -7.27 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682184779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.454 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds