Wall clock time and date at job start Fri Apr 10 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46945 * 270.00310 * 3 2 1 5 5 H 1.48503 * 109.46853 * 29.99657 * 3 2 1 6 6 H 1.48498 * 109.47325 * 149.99561 * 3 2 1 7 7 C 1.38947 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00286 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00024 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00022 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00060 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99765 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99802 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99725 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99905 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47317 * 179.97438 * 17 16 14 19 19 O 1.42896 * 109.46947 * 64.99892 * 18 17 16 20 20 C 1.42899 * 114.00352 * 180.02562 * 19 18 17 21 21 C 1.53175 * 109.54545 * 269.56219 * 20 19 18 22 22 C 1.53094 * 109.16661 * 183.14980 * 21 20 19 23 23 O 1.42898 * 109.41211 * 57.60371 * 22 21 20 24 24 C 1.42897 * 114.10001 * 298.84343 * 23 22 21 25 25 C 1.53089 * 109.41656 * 61.16248 * 24 23 22 26 26 H 0.97002 * 119.99962 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00158 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46934 * 60.00550 * 12 10 9 29 29 H 1.08994 * 109.46967 * 300.00394 * 12 10 9 30 30 H 0.97002 * 119.99819 * 359.97438 * 13 12 10 31 31 H 0.97000 * 120.00297 * 0.02562 * 16 14 13 32 32 H 1.08999 * 109.47113 * 59.99703 * 17 16 14 33 33 H 1.09002 * 109.47186 * 300.00049 * 17 16 14 34 34 H 1.09000 * 109.47001 * 305.00230 * 18 17 16 35 35 H 1.09001 * 109.47043 * 185.00041 * 18 17 16 36 36 H 1.09004 * 109.61153 * 29.77680 * 20 19 18 37 37 H 1.09004 * 109.52259 * 303.05246 * 21 20 19 38 38 H 1.09006 * 109.52330 * 63.24079 * 21 20 19 39 39 H 1.09006 * 109.47665 * 297.62062 * 22 21 20 40 40 H 1.08993 * 109.47955 * 177.58818 * 22 21 20 41 41 H 1.09002 * 109.48425 * 301.17758 * 24 23 22 42 42 H 1.09001 * 109.49443 * 181.15303 * 24 23 22 43 43 H 1.08997 * 109.52675 * 182.48845 * 25 24 23 44 44 H 1.08995 * 109.52428 * 62.29514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3741 -3.9980 0.0023 15 8 8.1642 -3.0738 0.0019 16 7 7.8233 -5.2687 0.0023 17 6 9.2637 -5.5364 0.0025 18 6 9.5016 -7.0478 0.0031 19 8 9.0131 -7.6074 -1.2176 20 6 9.1869 -9.0221 -1.3191 21 6 10.5370 -9.3268 -1.9754 22 6 10.6799 -10.8409 -2.1515 23 8 9.5910 -11.3328 -2.9352 24 6 8.3059 -11.1184 -2.3482 25 6 8.0676 -9.6155 -2.1801 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3633 -0.0004 28 1 5.9240 -1.8560 0.8906 29 1 5.9240 -1.8574 -0.8893 30 1 5.4186 -4.4890 0.0024 31 1 7.1930 -6.0060 0.0015 32 1 9.7147 -5.0976 0.8924 33 1 9.7149 -5.0977 -0.8875 34 1 8.9757 -7.4980 0.8451 35 1 10.5694 -7.2476 0.0928 36 1 9.1565 -9.4668 -0.3244 37 1 10.5863 -8.8406 -2.9498 38 1 11.3423 -8.9562 -1.3411 39 1 10.6712 -11.3229 -1.1739 40 1 11.6201 -11.0608 -2.6570 41 1 8.2660 -11.6041 -1.3732 42 1 7.5358 -11.5384 -2.9952 43 1 7.1069 -9.4514 -1.6921 44 1 8.0670 -9.1351 -3.1584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682184779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:16 Heat of formation + Delta-G solvation = -189.463700 kcal Electronic energy + Delta-G solvation = -25611.186375 eV Core-core repulsion = 21562.513108 eV Total energy + Delta-G solvation = -4048.673267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24016 -40.58839 -40.12949 -38.60049 -36.32646 -35.86948 -35.27464 -33.83248 -33.40118 -32.09418 -30.65823 -28.83133 -26.19757 -25.31746 -24.59986 -23.45746 -21.98006 -21.46502 -21.34836 -20.58911 -19.54713 -18.17692 -17.68788 -17.42508 -17.08158 -16.99599 -16.82308 -16.70362 -16.30411 -15.83369 -15.78632 -15.60838 -15.40577 -14.92946 -14.80619 -14.49694 -14.31822 -14.09971 -13.98630 -13.86659 -13.41753 -13.22709 -12.95564 -12.63993 -12.44221 -12.37980 -12.21439 -11.99676 -11.77884 -11.57742 -11.44690 -11.33064 -10.66834 -10.65022 -10.47635 -10.42646 -10.31516 -9.80417 -8.45216 -6.07153 1.31697 1.34750 1.44296 1.61857 1.79327 2.12814 2.20990 2.53957 2.80619 2.96484 3.11074 3.33548 3.72475 3.76622 3.96633 3.99700 4.01220 4.11960 4.21243 4.26959 4.35196 4.41070 4.45198 4.46796 4.51821 4.67235 4.77042 4.77456 4.83835 4.87253 5.05959 5.12684 5.22206 5.29993 5.47587 5.50624 5.88552 5.94774 6.23079 6.25101 6.49291 6.78436 7.02010 7.28958 7.53075 7.78631 8.71154 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.001987 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.620370 B =14090.577123 C =14965.414913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.728 5.728 14 C 0.705 3.295 15 O -0.632 6.632 16 N -0.730 5.730 17 C 0.141 3.859 18 C 0.054 3.946 19 O -0.397 6.397 20 C 0.086 3.914 21 C -0.176 4.176 22 C 0.060 3.940 23 O -0.407 6.407 24 C 0.063 3.937 25 C -0.155 4.155 26 H 0.281 0.719 27 H 0.392 0.608 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.409 0.591 31 H 0.409 0.591 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.972 -18.687 0.002 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.386 5.386 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.386 5.386 17 C 0.017 3.983 18 C -0.022 4.022 19 O -0.317 6.317 20 C 0.029 3.971 21 C -0.214 4.214 22 C -0.016 4.016 23 O -0.326 6.326 24 C -0.013 4.013 25 C -0.193 4.193 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.247 0.753 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.029 -18.424 -0.316 31.081 hybrid contribution -0.812 0.540 0.237 1.003 sum 24.218 -17.884 -0.080 30.105 Atomic orbital electron populations 1.69781 1.08011 1.29444 1.49307 1.26074 0.96454 1.02615 0.95739 0.85439 0.79589 0.77007 0.80057 1.18144 1.19803 1.15554 1.19028 0.80954 0.95269 1.50743 0.91841 1.41917 1.06129 1.07420 1.66309 1.20512 0.90052 0.83861 0.82245 1.90522 1.70809 1.32330 1.56392 1.20689 0.89177 0.84226 1.04927 1.44718 1.05655 1.08765 1.79415 1.15933 0.81870 0.84042 0.77734 1.90876 1.55748 1.44494 1.60252 1.44929 1.09015 1.05223 1.79444 1.21334 0.79446 0.94856 1.02686 1.22884 1.00711 0.91613 0.87030 1.87995 1.82731 1.21766 1.39247 1.22210 0.94601 0.81077 0.99233 1.22708 0.98454 0.97863 1.02329 1.22706 0.90317 0.92007 0.96616 1.87925 1.15431 1.80690 1.48551 1.22679 0.85221 0.93678 0.99761 1.22304 0.99344 0.96794 1.00876 0.90929 0.77208 0.87967 0.88174 0.75339 0.75533 0.89407 0.92315 0.90773 0.89282 0.90092 0.91986 0.89114 0.91423 0.87649 0.91328 0.87675 0.89599 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.50 13.96 21.66 0.30 -54.20 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 0.96 38.27 27.74 68.60 1.90 40.17 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.33 -18.86 10.16 84.04 0.85 -18.00 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -26.73 5.09 -306.98 -1.56 -28.29 16 10 C 0.45 19.61 7.85 87.66 0.69 20.29 16 11 O -0.61 -31.82 15.24 -3.08 -0.05 -31.87 16 12 C 0.14 4.64 6.15 85.63 0.53 5.17 16 13 N -0.73 -22.94 5.53 -482.28 -2.67 -25.61 16 14 C 0.70 21.39 8.57 179.05 1.53 22.92 16 15 O -0.63 -23.09 16.34 -4.00 -0.07 -23.15 16 16 N -0.73 -16.14 5.51 -478.53 -2.64 -18.78 16 17 C 0.14 2.48 6.06 86.38 0.52 3.00 16 18 C 0.05 0.61 5.89 71.98 0.42 1.04 16 19 O -0.40 -6.35 9.94 -148.98 -1.48 -7.83 16 20 C 0.09 1.04 2.70 30.71 0.08 1.12 16 21 C -0.18 -1.92 5.76 30.68 0.18 -1.74 16 22 C 0.06 0.59 6.84 72.01 0.49 1.09 16 23 O -0.41 -6.22 10.76 -148.98 -1.60 -7.82 16 24 C 0.06 0.72 6.84 72.01 0.49 1.21 16 25 C -0.16 -2.08 5.79 30.68 0.18 -1.90 16 26 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.41 12.85 7.45 -92.71 -0.69 12.16 16 31 H 0.41 7.59 8.49 -92.71 -0.79 6.81 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 35 H 0.09 0.63 7.99 -2.39 -0.02 0.61 16 36 H 0.08 0.67 7.79 -2.38 -0.02 0.65 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 0.69 7.99 -2.38 -0.02 0.67 16 39 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.79 367.79 -2.45 -80.24 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -1.03 Total: 42.97 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 6.44 Total: 34.18 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.56 Total: -126.88 kcal Atomic # 8 Polarization: -67.48 SS G_CDS: -3.20 Total: -70.68 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -77.79 -2.45 -80.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682184779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.228 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds